HEADER TRANSFERASE 12-NOV-08 2W3D TITLE STRUCTURE OF THE FIRST GAF DOMAIN OF MYCOBACTERIUM TITLE 2 TUBERCULOSIS DOSS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TWO COMPONENT SENSOR HISTIDINE KINASE DEVS (GAF FAMILY COMPND 3 PROTEIN); COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: GAF DOMAIN, RESIDUES 63-210; COMPND 6 SYNONYM: DOSS; COMPND 7 EC: 2.7.3.-; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: D63 TO K120 OF DOSS WITH ADDITIONAL GAMDP SEQUENCE COMPND 10 AT THE N-TERMINUS DUE TO CLONING PROCEDURE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: B834 KEYWDS REDOX SENSOR, KINASE, HYPOXIA DOMAIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.S.KANG,H.Y.CHO,H.J.CHO REVDAT 4 13-JUL-11 2W3D 1 VERSN REVDAT 3 12-MAY-09 2W3D 1 JRNL REVDAT 2 24-MAR-09 2W3D 1 JRNL REVDAT 1 10-MAR-09 2W3D 0 JRNL AUTH H.Y.CHO,H.J.CHO,Y.M.KIM,J.I.OH,B.S.KANG JRNL TITL STRUCTURAL INSIGHT INTO THE HEME-BASED REDOX SENSING BY JRNL TITL 2 DOSS FROM MYCOBACTERIUM TUBERCULOSIS. JRNL REF J.BIOL.CHEM. V. 284 13057 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19276084 JRNL DOI 10.1074/JBC.M808905200 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 100.00 REMARK 3 NUMBER OF REFLECTIONS : 18112 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.21584 REMARK 3 R VALUE (WORKING SET) : 0.21256 REMARK 3 FREE R VALUE : 0.27850 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.2 REMARK 3 FREE R VALUE TEST SET COUNT : 991 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.003 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.054 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1033 REMARK 3 BIN R VALUE (WORKING SET) : 0.288 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.323 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2196 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 127 REMARK 3 SOLVENT ATOMS : 118 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : UNVERIFIED REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.210 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.44 REMARK 3 B22 (A**2) : 0.24 REMARK 3 B33 (A**2) : 0.21 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.234 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.208 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.181 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.303 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.871 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2379 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3253 ; 1.175 ; 2.015 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 290 ; 5.768 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 104 ;33.697 ;22.885 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 351 ;15.388 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;16.738 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 356 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1859 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1109 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1651 ; 0.295 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 140 ; 0.163 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 42 ; 0.195 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.112 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1492 ; 1.333 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2346 ; 2.119 ; 5.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 984 ; 3.686 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 907 ; 5.311 ;11.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 58 A 205 REMARK 3 ORIGIN FOR THE GROUP (A): 8.8770 26.6230 67.9220 REMARK 3 T TENSOR REMARK 3 T11: -0.0046 T22: -0.0898 REMARK 3 T33: -0.0682 T12: 0.0012 REMARK 3 T13: -0.0126 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.1225 L22: 2.8997 REMARK 3 L33: 3.0184 L12: -0.1388 REMARK 3 L13: 0.2094 L23: -1.5164 REMARK 3 S TENSOR REMARK 3 S11: -0.0199 S12: -0.0905 S13: 0.0241 REMARK 3 S21: -0.3199 S22: -0.0588 S23: -0.0640 REMARK 3 S31: 0.0882 S32: 0.0550 S33: 0.0787 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 63 B 206 REMARK 3 ORIGIN FOR THE GROUP (A): 4.2950 48.8000 49.2090 REMARK 3 T TENSOR REMARK 3 T11: -0.0846 T22: -0.0581 REMARK 3 T33: -0.0276 T12: -0.0227 REMARK 3 T13: 0.0027 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.0324 L22: 1.7141 REMARK 3 L33: 5.4278 L12: -0.2041 REMARK 3 L13: 0.2448 L23: -0.3026 REMARK 3 S TENSOR REMARK 3 S11: -0.0013 S12: -0.0118 S13: -0.0548 REMARK 3 S21: 0.0826 S22: 0.0108 S23: 0.0354 REMARK 3 S31: -0.3349 S32: -0.0117 S33: -0.0096 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2W3D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-NOV-08. REMARK 100 THE PDBE ID CODE IS EBI-38078. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL2000 REMARK 200 DATA SCALING SOFTWARE : HKL2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40262 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.00 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 5.4 REMARK 200 R MERGE (I) : 0.12 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.20 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% PEG6000, 0.2M CALCIUM REMARK 280 CHLORIDE IN TRIS-HCL, PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.83550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.58500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.48150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.58500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.83550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.48150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 206 REMARK 465 GLN A 207 REMARK 465 GLN A 208 REMARK 465 ALA A 209 REMARK 465 LYS A 210 REMARK 465 GLY B 58 REMARK 465 ALA B 59 REMARK 465 MSE B 60 REMARK 465 ASP B 61 REMARK 465 PRO B 62 REMARK 465 GLN B 207 REMARK 465 GLN B 208 REMARK 465 ALA B 209 REMARK 465 LYS B 210 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 91 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 205 CG CD1 CD2 REMARK 470 TYR B 206 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 128 53.51 -61.54 REMARK 500 TYR A 148 -11.03 81.69 REMARK 500 ARG A 153 -73.06 -119.06 REMARK 500 ARG A 163 -114.65 55.64 REMARK 500 TYR B 148 -5.81 77.88 REMARK 500 ARG B 153 -69.49 -122.49 REMARK 500 ASP B 174 70.61 61.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 500 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 149 NE2 REMARK 620 2 HEM A 500 NB 95.8 REMARK 620 3 HEM A 500 NC 92.0 93.2 REMARK 620 4 HEM A 500 ND 89.7 173.9 89.2 REMARK 620 5 HEM A 500 NA 97.6 87.6 170.2 89.2 REMARK 620 6 HOH A2050 O 160.9 90.1 105.8 83.9 64.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 502 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 149 NE2 REMARK 620 2 HEM B 502 NA 96.9 REMARK 620 3 HEM B 502 NB 94.5 89.5 REMARK 620 4 HEM B 502 ND 93.8 89.4 171.7 REMARK 620 5 HEM B 502 NC 92.1 171.1 89.8 90.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1206 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 183 OD1 REMARK 620 2 HOH A2014 O 100.7 REMARK 620 3 ASP A 80 OD1 121.1 102.4 REMARK 620 4 ASP A 80 OD2 110.6 57.1 48.3 REMARK 620 5 ASP A 183 OD2 44.1 102.5 78.1 74.9 REMARK 620 6 HOH A2042 O 77.4 172.5 72.9 116.5 71.1 REMARK 620 7 HOH A2012 O 140.9 64.9 97.8 92.1 165.8 121.1 REMARK 620 8 HOH A2013 O 135.4 121.0 67.4 105.3 128.6 63.1 60.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1206 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2W3H RELATED DB: PDB REMARK 900 CYANIDE BOUND STRUCTURE OF THE FIRST GAF REMARK 900 DOMAIN OF MYCOBACTERIUM TUBERCULOSIS DOSS REMARK 900 RELATED ID: 2W3F RELATED DB: PDB REMARK 900 REDUCED STRUCTURE OF THE FIRST GAF DOMAIN REMARK 900 OF MYCOBACTERIUM TUBERCULOSIS DOSS REMARK 900 RELATED ID: 2W3E RELATED DB: PDB REMARK 900 OXIDEIZED STRUCTURE OF THE FIRST GAF DOMAIN REMARK 900 OF MYCOBACTERIUM TUBERCULOSIS DOSS REMARK 900 RELATED ID: 2W3G RELATED DB: PDB REMARK 900 AIR-OXIDIZED STRUCTURE OF THE FIRST GAF REMARK 900 DOMAIN OF MYCOBACTERIUM TUBERCULOSIS DOSS DBREF 2W3D A 63 210 UNP P95194 DEVS_MYCTU 63 210 DBREF 2W3D B 63 210 UNP P95194 DEVS_MYCTU 63 210 SEQADV 2W3D GLY A 58 UNP P95194 EXPRESSION TAG SEQADV 2W3D ALA A 59 UNP P95194 EXPRESSION TAG SEQADV 2W3D MSE A 60 UNP P95194 EXPRESSION TAG SEQADV 2W3D ASP A 61 UNP P95194 EXPRESSION TAG SEQADV 2W3D PRO A 62 UNP P95194 EXPRESSION TAG SEQADV 2W3D GLY B 58 UNP P95194 EXPRESSION TAG SEQADV 2W3D ALA B 59 UNP P95194 EXPRESSION TAG SEQADV 2W3D MSE B 60 UNP P95194 EXPRESSION TAG SEQADV 2W3D ASP B 61 UNP P95194 EXPRESSION TAG SEQADV 2W3D PRO B 62 UNP P95194 EXPRESSION TAG SEQRES 1 A 153 GLY ALA MSE ASP PRO ASP LEU GLU ALA THR LEU ARG ALA SEQRES 2 A 153 ILE VAL HIS SER ALA THR SER LEU VAL ASP ALA ARG TYR SEQRES 3 A 153 GLY ALA MSE GLU VAL HIS ASP ARG GLN HIS ARG VAL LEU SEQRES 4 A 153 HIS PHE VAL TYR GLU GLY ILE ASP GLU GLU THR VAL ARG SEQRES 5 A 153 ARG ILE GLY HIS LEU PRO LYS GLY LEU GLY VAL ILE GLY SEQRES 6 A 153 LEU LEU ILE GLU ASP PRO LYS PRO LEU ARG LEU ASP ASP SEQRES 7 A 153 VAL SER ALA HIS PRO ALA SER ILE GLY PHE PRO PRO TYR SEQRES 8 A 153 HIS PRO PRO MSE ARG THR PHE LEU GLY VAL PRO VAL ARG SEQRES 9 A 153 VAL ARG ASP GLU SER PHE GLY THR LEU TYR LEU THR ASP SEQRES 10 A 153 LYS THR ASN GLY GLN PRO PHE SER ASP ASP ASP GLU VAL SEQRES 11 A 153 LEU VAL GLN ALA LEU ALA ALA ALA ALA GLY ILE ALA VAL SEQRES 12 A 153 ALA ASN ALA ARG LEU TYR GLN GLN ALA LYS SEQRES 1 B 153 GLY ALA MSE ASP PRO ASP LEU GLU ALA THR LEU ARG ALA SEQRES 2 B 153 ILE VAL HIS SER ALA THR SER LEU VAL ASP ALA ARG TYR SEQRES 3 B 153 GLY ALA MSE GLU VAL HIS ASP ARG GLN HIS ARG VAL LEU SEQRES 4 B 153 HIS PHE VAL TYR GLU GLY ILE ASP GLU GLU THR VAL ARG SEQRES 5 B 153 ARG ILE GLY HIS LEU PRO LYS GLY LEU GLY VAL ILE GLY SEQRES 6 B 153 LEU LEU ILE GLU ASP PRO LYS PRO LEU ARG LEU ASP ASP SEQRES 7 B 153 VAL SER ALA HIS PRO ALA SER ILE GLY PHE PRO PRO TYR SEQRES 8 B 153 HIS PRO PRO MSE ARG THR PHE LEU GLY VAL PRO VAL ARG SEQRES 9 B 153 VAL ARG ASP GLU SER PHE GLY THR LEU TYR LEU THR ASP SEQRES 10 B 153 LYS THR ASN GLY GLN PRO PHE SER ASP ASP ASP GLU VAL SEQRES 11 B 153 LEU VAL GLN ALA LEU ALA ALA ALA ALA GLY ILE ALA VAL SEQRES 12 B 153 ALA ASN ALA ARG LEU TYR GLN GLN ALA LYS MODRES 2W3D MSE A 60 MET SELENOMETHIONINE MODRES 2W3D MSE A 86 MET SELENOMETHIONINE MODRES 2W3D MSE A 152 MET SELENOMETHIONINE MODRES 2W3D MSE B 86 MET SELENOMETHIONINE MODRES 2W3D MSE B 152 MET SELENOMETHIONINE HET MSE A 60 8 HET MSE A 86 8 HET MSE A 152 8 HET HEM A 500 43 HET MSE B 86 8 HET MSE B 152 8 HET HEM B 502 43 HET CA A1206 1 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CA CALCIUM ION HETNAM MSE SELENOMETHIONINE FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 CA CA 2+ FORMUL 5 MSE 5(C5 H11 N O2 SE) FORMUL 6 HOH *118(H2 O) HELIX 1 1 ASP A 61 ASP A 80 1 20 HELIX 2 2 ARG A 91 HIS A 93 5 3 HELIX 3 3 ASP A 104 GLY A 112 1 9 HELIX 4 4 LEU A 118 ILE A 121 5 4 HELIX 5 5 GLY A 122 ASP A 127 1 6 HELIX 6 6 ASP A 135 HIS A 139 5 5 HELIX 7 7 SER A 182 LEU A 205 1 24 HELIX 8 8 ASP B 63 ASP B 80 1 18 HELIX 9 9 ASP B 104 GLY B 112 1 9 HELIX 10 10 LEU B 118 ASP B 127 1 10 HELIX 11 11 ASP B 135 HIS B 139 5 5 HELIX 12 12 ASN B 177 GLN B 179 5 3 HELIX 13 13 SER B 182 ARG B 204 1 23 SHEET 1 AA 5 VAL A 95 GLU A 101 0 SHEET 2 AA 5 ALA A 81 HIS A 89 -1 O GLY A 84 N GLU A 101 SHEET 3 AA 5 GLU A 165 LYS A 175 -1 O PHE A 167 N HIS A 89 SHEET 4 AA 5 PHE A 155 VAL A 162 -1 O LEU A 156 N LEU A 172 SHEET 5 AA 5 LEU A 131 LEU A 133 -1 O LEU A 131 N GLY A 157 SHEET 1 BA 5 VAL B 95 GLU B 101 0 SHEET 2 BA 5 ALA B 81 HIS B 89 -1 O GLY B 84 N GLU B 101 SHEET 3 BA 5 SER B 166 LYS B 175 -1 O PHE B 167 N HIS B 89 SHEET 4 BA 5 PHE B 155 ARG B 161 -1 O LEU B 156 N LEU B 172 SHEET 5 BA 5 LEU B 131 LEU B 133 -1 O LEU B 131 N GLY B 157 LINK C ALA A 59 N MSE A 60 1555 1555 1.33 LINK C MSE A 60 N ASP A 61 1555 1555 1.33 LINK C ALA A 85 N MSE A 86 1555 1555 1.33 LINK C MSE A 86 N GLU A 87 1555 1555 1.33 LINK C PRO A 151 N MSE A 152 1555 1555 1.33 LINK C MSE A 152 N ARG A 153 1555 1555 1.33 LINK FE HEM A 500 NE2 HIS A 149 1555 1555 2.32 LINK FE HEM A 500 O HOH A2050 1555 1555 2.75 LINK CA CA A1206 O HOH A2042 1555 4456 2.38 LINK CA CA A1206 O HOH A2012 1555 1555 2.64 LINK CA CA A1206 O HOH A2013 1555 1555 2.32 LINK CA CA A1206 OD1 ASP A 183 1555 4456 3.14 LINK CA CA A1206 O HOH A2014 1555 1555 2.41 LINK CA CA A1206 OD2 ASP A 183 1555 4456 2.27 LINK CA CA A1206 OD2 ASP A 80 1555 1555 2.62 LINK CA CA A1206 OD1 ASP A 80 1555 1555 2.75 LINK C ALA B 85 N MSE B 86 1555 1555 1.33 LINK C MSE B 86 N GLU B 87 1555 1555 1.33 LINK C PRO B 151 N MSE B 152 1555 1555 1.33 LINK C MSE B 152 N ARG B 153 1555 1555 1.33 LINK FE HEM B 502 NE2 HIS B 149 1555 1555 2.19 SITE 1 AC1 22 GLY A 84 GLU A 101 ILE A 103 ILE A 111 SITE 2 AC1 22 HIS A 113 LEU A 114 PRO A 115 LYS A 116 SITE 3 AC1 22 GLY A 117 LEU A 118 GLY A 119 VAL A 120 SITE 4 AC1 22 SER A 142 ILE A 143 GLY A 144 PHE A 145 SITE 5 AC1 22 PRO A 146 HIS A 149 TYR A 171 HOH A2050 SITE 6 AC1 22 HOH A2051 HOH A2052 SITE 1 AC2 21 GLY B 84 PHE B 98 GLU B 101 ILE B 103 SITE 2 AC2 21 HIS B 113 LEU B 114 PRO B 115 LYS B 116 SITE 3 AC2 21 GLY B 117 LEU B 118 VAL B 120 SER B 142 SITE 4 AC2 21 ILE B 143 GLY B 144 PRO B 146 HIS B 149 SITE 5 AC2 21 MSE B 152 TYR B 171 THR B 173 HOH B2044 SITE 6 AC2 21 HOH B2065 SITE 1 AC3 6 ASP A 80 ASP A 183 HOH A2012 HOH A2013 SITE 2 AC3 6 HOH A2014 HOH A2042 CRYST1 35.671 86.963 101.170 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028034 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011499 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009884 0.00000