HEADER LYASE 13-NOV-08 2W3P TITLE BOXC CRYSTAL STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BENZOYL-COA-DIHYDRODIOL LYASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BOXC, DIHYDRODIOL LYASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA XENOVORANS; SOURCE 3 ORGANISM_TAXID: 266265; SOURCE 4 STRAIN: LB400; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS COA, BOXC, LYASE, CROTONASE, RING CLEAVING, BURKHOLDERIA XENOVORANS KEYWDS 2 LB400 CROTONASE EXPDTA X-RAY DIFFRACTION AUTHOR J.BAINS,M.J.BOULANGER REVDAT 4 05-JUL-17 2W3P 1 REMARK REVDAT 3 23-JUN-09 2W3P 1 JRNL REMARK REVDAT 2 28-APR-09 2W3P 1 JRNL REVDAT 1 14-APR-09 2W3P 0 JRNL AUTH J.BAINS,R.LEON,M.J.BOULANGER JRNL TITL STRUCTURAL AND BIOPHYSICAL CHARACTERIZATION OF BOXC FROM JRNL TITL 2 BURKHOLDERIA XENOVORANS LB400: A NOVEL RING-CLEAVING ENZYME JRNL TITL 3 IN THE CROTONASE SUPERFAMILY. JRNL REF J.BIOL.CHEM. V. 284 16377 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19369256 JRNL DOI 10.1074/JBC.M900226200 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0077 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 174578 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 9238 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 11138 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.4260 REMARK 3 BIN FREE R VALUE SET COUNT : 581 REMARK 3 BIN FREE R VALUE : 0.4520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8567 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 1313 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.078 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.043 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.141 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8777 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11890 ; 1.303 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1093 ; 5.802 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 418 ;35.779 ;22.919 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1448 ;11.477 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 92 ;17.149 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1319 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6720 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5445 ; 0.640 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8738 ; 1.141 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3332 ; 1.887 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3152 ; 3.007 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2W3P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1290038112. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-002 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU IMAGE PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 183917 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 34.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.430 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.13 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350 0.1 M TRIS 8.5, PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.57950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.36700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.92350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.36700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.57950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.92350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 9130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 ALA A 4 REMARK 465 GLU A 5 REMARK 465 THR A 6 REMARK 465 ALA A 7 REMARK 465 VAL A 8 REMARK 465 ALA A 9 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 THR B 3 REMARK 465 ALA B 4 REMARK 465 GLU B 5 REMARK 465 THR B 6 REMARK 465 ALA B 7 REMARK 465 VAL B 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 453 OE1 GLN A 456 0.75 REMARK 500 NH2 ARG A 333 OE2 GLU A 383 1.89 REMARK 500 NH1 ARG A 453 CD GLN A 456 1.92 REMARK 500 CZ ARG A 453 OE1 GLN A 456 2.05 REMARK 500 O HOH A 732 O HOH A 1142 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 555 CD - NE - CZ ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG A 555 NE - CZ - NH1 ANGL. DEV. = 7.7 DEGREES REMARK 500 ARG A 555 NE - CZ - NH2 ANGL. DEV. = -7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 50 74.05 -102.86 REMARK 500 ARG A 88 -28.94 85.16 REMARK 500 SER A 161 -58.66 -133.86 REMARK 500 PRO A 176 89.23 -68.92 REMARK 500 THR A 178 50.00 -91.20 REMARK 500 ARG A 214 14.69 81.77 REMARK 500 GLU A 442 19.83 58.72 REMARK 500 PHE A 506 76.26 -100.11 REMARK 500 LEU B 50 76.78 -104.46 REMARK 500 ARG B 88 -5.30 70.70 REMARK 500 PRO B 176 89.23 -67.56 REMARK 500 THR B 178 47.90 -92.49 REMARK 500 ASN B 410 58.48 -152.42 REMARK 500 PHE B 506 74.08 -100.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1310 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A1311 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH B1401 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH B1402 DISTANCE = 6.61 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BME A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BME A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide BME B 601 and CYS B REMARK 800 111 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide BME B 602 and CYS B REMARK 800 91 DBREF 2W3P A 1 556 UNP Q13WK7 Q13WK7_BURXL 1 556 DBREF 2W3P B 1 556 UNP Q13WK7 Q13WK7_BURXL 1 556 SEQRES 1 A 556 MET SER THR ALA GLU THR ALA VAL ALA PRO VAL ASP TYR SEQRES 2 A 556 ARG THR ASP PRO SER GLN TYR LYS HIS TRP LYS LEU SER SEQRES 3 A 556 PHE ASN GLY PRO VAL ALA THR LEU GLY ILE ASP ILE ALA SEQRES 4 A 556 GLU ASP GLY GLY ILE ARG ASP GLY TYR LYS LEU LYS LEU SEQRES 5 A 556 ASN SER TYR ASP LEU GLY VAL ASP ILE GLU LEU HIS ASP SEQRES 6 A 556 ALA ILE GLN ARG ILE ARG PHE GLU HIS PRO GLU VAL ARG SEQRES 7 A 556 THR VAL VAL LEU THR SER LEU LYS ASP ARG VAL PHE CYS SEQRES 8 A 556 SER GLY ALA ASN ILE PHE MET LEU GLY LEU SER THR HIS SEQRES 9 A 556 ALA TRP LYS VAL ASN PHE CYS LYS PHE THR ASN GLU THR SEQRES 10 A 556 ARG ASN GLY LEU GLU ASP SER SER ARG HIS SER GLY LEU SEQRES 11 A 556 LYS PHE LEU ALA ALA VAL ASN GLY ALA CYS ALA GLY GLY SEQRES 12 A 556 GLY TYR GLU LEU ALA LEU ALA CYS ASP GLU ILE TYR LEU SEQRES 13 A 556 VAL ASP ASP ARG SER SER SER VAL SER LEU PRO GLU VAL SEQRES 14 A 556 PRO LEU LEU GLY VAL LEU PRO GLY THR GLY GLY LEU THR SEQRES 15 A 556 ARG VAL THR ASP LYS ARG LYS VAL ARG HIS ASP ARG ALA SEQRES 16 A 556 ASP ILE PHE CYS THR VAL VAL GLU GLY VAL ARG GLY GLU SEQRES 17 A 556 ARG ALA LYS ALA TRP ARG LEU VAL ASP GLU VAL VAL LYS SEQRES 18 A 556 PRO ASN GLN PHE ASP GLN ALA ILE GLN ALA ARG ALA LEU SEQRES 19 A 556 GLU LEU ALA ALA GLN SER ASP ARG PRO ALA HIS ALA GLN SEQRES 20 A 556 GLY VAL PRO LEU THR ARG ILE GLU ARG THR ASP ARG GLU SEQRES 21 A 556 ASP GLY LEU THR TYR LYS THR LEU ASP VAL THR ILE ASP SEQRES 22 A 556 ARG ALA LYS ARG ILE ALA THR PHE THR ALA LYS ALA PRO SEQRES 23 A 556 GLN THR GLU PRO PRO ALA SER ILE ASP ALA ILE VAL ALA SEQRES 24 A 556 ALA GLY ALA ASN TRP TRP PRO LEU LYS PHE ALA ARG GLU SEQRES 25 A 556 PHE ASP ASP ALA ILE LEU SER MET ARG THR ASN GLU LEU SEQRES 26 A 556 ALA VAL GLY THR TRP VAL PHE ARG THR GLU GLY ASP ALA SEQRES 27 A 556 ARG HIS LEU LEU ALA ALA ASP ALA SER LEU MET GLN HIS SEQRES 28 A 556 LYS ASP HIS TRP PHE VAL ARG GLU THR ILE GLY LEU LEU SEQRES 29 A 556 ARG ARG THR LEU ALA ARG ILE ASP VAL SER SER ARG SER SEQRES 30 A 556 LEU PHE ALA LEU ILE GLU PRO GLY SER CYS PHE ALA GLY SEQRES 31 A 556 THR PHE ALA GLU LEU ALA PHE ALA ALA ASP ARG THR TYR SEQRES 32 A 556 MET ALA ALA LEU PRO ALA ASN GLU ASP GLU GLU PRO ALA SEQRES 33 A 556 ILE THR LEU SER GLU VAL ASN PHE GLY LEU TYR PRO MET SEQRES 34 A 556 VAL THR HIS GLN SER ARG LEU ALA ARG ARG PHE TYR GLU SEQRES 35 A 556 GLU THR GLU PRO LEU ASP ALA VAL ARG SER ARG ILE GLY SEQRES 36 A 556 GLN ALA ILE LYS PRO VAL GLU ALA GLU ARG LEU GLY LEU SEQRES 37 A 556 VAL THR ALA SER PRO ASP ASP ILE ASP TRP ALA ASP GLU SEQRES 38 A 556 ILE ARG ILE ALA LEU GLU GLU ARG ALA ALA MET SER PRO SEQRES 39 A 556 ASP ALA LEU THR GLY LEU GLU ALA ASN LEU ARG PHE ASN SEQRES 40 A 556 GLY PRO GLU THR MET GLU THR ARG ILE PHE GLY ARG LEU SEQRES 41 A 556 THR ALA TRP GLN ASN TRP ILE PHE ASN ARG PRO ASN ALA SEQRES 42 A 556 VAL GLY GLU LYS GLY ALA LEU LYS VAL TYR GLY LYS GLY SEQRES 43 A 556 SER LYS ALA GLN PHE ASP VAL SER ARG VAL SEQRES 1 B 556 MET SER THR ALA GLU THR ALA VAL ALA PRO VAL ASP TYR SEQRES 2 B 556 ARG THR ASP PRO SER GLN TYR LYS HIS TRP LYS LEU SER SEQRES 3 B 556 PHE ASN GLY PRO VAL ALA THR LEU GLY ILE ASP ILE ALA SEQRES 4 B 556 GLU ASP GLY GLY ILE ARG ASP GLY TYR LYS LEU LYS LEU SEQRES 5 B 556 ASN SER TYR ASP LEU GLY VAL ASP ILE GLU LEU HIS ASP SEQRES 6 B 556 ALA ILE GLN ARG ILE ARG PHE GLU HIS PRO GLU VAL ARG SEQRES 7 B 556 THR VAL VAL LEU THR SER LEU LYS ASP ARG VAL PHE CYS SEQRES 8 B 556 SER GLY ALA ASN ILE PHE MET LEU GLY LEU SER THR HIS SEQRES 9 B 556 ALA TRP LYS VAL ASN PHE CYS LYS PHE THR ASN GLU THR SEQRES 10 B 556 ARG ASN GLY LEU GLU ASP SER SER ARG HIS SER GLY LEU SEQRES 11 B 556 LYS PHE LEU ALA ALA VAL ASN GLY ALA CYS ALA GLY GLY SEQRES 12 B 556 GLY TYR GLU LEU ALA LEU ALA CYS ASP GLU ILE TYR LEU SEQRES 13 B 556 VAL ASP ASP ARG SER SER SER VAL SER LEU PRO GLU VAL SEQRES 14 B 556 PRO LEU LEU GLY VAL LEU PRO GLY THR GLY GLY LEU THR SEQRES 15 B 556 ARG VAL THR ASP LYS ARG LYS VAL ARG HIS ASP ARG ALA SEQRES 16 B 556 ASP ILE PHE CYS THR VAL VAL GLU GLY VAL ARG GLY GLU SEQRES 17 B 556 ARG ALA LYS ALA TRP ARG LEU VAL ASP GLU VAL VAL LYS SEQRES 18 B 556 PRO ASN GLN PHE ASP GLN ALA ILE GLN ALA ARG ALA LEU SEQRES 19 B 556 GLU LEU ALA ALA GLN SER ASP ARG PRO ALA HIS ALA GLN SEQRES 20 B 556 GLY VAL PRO LEU THR ARG ILE GLU ARG THR ASP ARG GLU SEQRES 21 B 556 ASP GLY LEU THR TYR LYS THR LEU ASP VAL THR ILE ASP SEQRES 22 B 556 ARG ALA LYS ARG ILE ALA THR PHE THR ALA LYS ALA PRO SEQRES 23 B 556 GLN THR GLU PRO PRO ALA SER ILE ASP ALA ILE VAL ALA SEQRES 24 B 556 ALA GLY ALA ASN TRP TRP PRO LEU LYS PHE ALA ARG GLU SEQRES 25 B 556 PHE ASP ASP ALA ILE LEU SER MET ARG THR ASN GLU LEU SEQRES 26 B 556 ALA VAL GLY THR TRP VAL PHE ARG THR GLU GLY ASP ALA SEQRES 27 B 556 ARG HIS LEU LEU ALA ALA ASP ALA SER LEU MET GLN HIS SEQRES 28 B 556 LYS ASP HIS TRP PHE VAL ARG GLU THR ILE GLY LEU LEU SEQRES 29 B 556 ARG ARG THR LEU ALA ARG ILE ASP VAL SER SER ARG SER SEQRES 30 B 556 LEU PHE ALA LEU ILE GLU PRO GLY SER CYS PHE ALA GLY SEQRES 31 B 556 THR PHE ALA GLU LEU ALA PHE ALA ALA ASP ARG THR TYR SEQRES 32 B 556 MET ALA ALA LEU PRO ALA ASN GLU ASP GLU GLU PRO ALA SEQRES 33 B 556 ILE THR LEU SER GLU VAL ASN PHE GLY LEU TYR PRO MET SEQRES 34 B 556 VAL THR HIS GLN SER ARG LEU ALA ARG ARG PHE TYR GLU SEQRES 35 B 556 GLU THR GLU PRO LEU ASP ALA VAL ARG SER ARG ILE GLY SEQRES 36 B 556 GLN ALA ILE LYS PRO VAL GLU ALA GLU ARG LEU GLY LEU SEQRES 37 B 556 VAL THR ALA SER PRO ASP ASP ILE ASP TRP ALA ASP GLU SEQRES 38 B 556 ILE ARG ILE ALA LEU GLU GLU ARG ALA ALA MET SER PRO SEQRES 39 B 556 ASP ALA LEU THR GLY LEU GLU ALA ASN LEU ARG PHE ASN SEQRES 40 B 556 GLY PRO GLU THR MET GLU THR ARG ILE PHE GLY ARG LEU SEQRES 41 B 556 THR ALA TRP GLN ASN TRP ILE PHE ASN ARG PRO ASN ALA SEQRES 42 B 556 VAL GLY GLU LYS GLY ALA LEU LYS VAL TYR GLY LYS GLY SEQRES 43 B 556 SER LYS ALA GLN PHE ASP VAL SER ARG VAL HET BME A 601 4 HET BME A 602 4 HET GOL A 603 6 HET GOL A 604 6 HET BME B 601 4 HET BME B 602 4 HET GOL B 603 6 HET GOL B 604 6 HETNAM BME BETA-MERCAPTOETHANOL HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 BME 4(C2 H6 O S) FORMUL 5 GOL 4(C3 H8 O3) FORMUL 11 HOH *1313(H2 O) HELIX 1 AA1 ASP A 16 TYR A 20 5 5 HELIX 2 AA2 ASP A 56 HIS A 74 1 19 HELIX 3 AA3 ASN A 95 SER A 102 1 8 HELIX 4 AA4 THR A 103 SER A 128 1 26 HELIX 5 AA5 GLY A 142 CYS A 151 1 10 HELIX 6 AA6 PRO A 167 GLY A 173 1 7 HELIX 7 AA7 GLY A 179 LYS A 187 1 9 HELIX 8 AA8 ARG A 191 CYS A 199 1 9 HELIX 9 AA9 ARG A 206 TRP A 213 1 8 HELIX 10 AB1 LYS A 221 ALA A 238 1 18 HELIX 11 AB2 SER A 293 GLY A 301 1 9 HELIX 12 AB3 TRP A 304 GLU A 324 1 21 HELIX 13 AB4 ASP A 337 HIS A 351 1 15 HELIX 14 AB5 HIS A 354 VAL A 373 1 20 HELIX 15 AB6 PHE A 392 ALA A 398 1 7 HELIX 16 AB7 SER A 420 PHE A 424 5 5 HELIX 17 AB8 SER A 434 PHE A 440 1 7 HELIX 18 AB9 GLU A 443 SER A 452 1 10 HELIX 19 AC1 LYS A 459 LEU A 466 1 8 HELIX 20 AC2 ASP A 477 MET A 492 1 16 HELIX 21 AC3 SER A 493 ARG A 505 1 13 HELIX 22 AC4 THR A 511 GLY A 518 1 8 HELIX 23 AC5 GLY A 518 ASN A 529 1 12 HELIX 24 AC6 ARG A 530 GLY A 535 1 6 HELIX 25 AC7 GLY A 538 TYR A 543 1 6 HELIX 26 AC8 ASP B 16 TYR B 20 5 5 HELIX 27 AC9 ASP B 56 HIS B 74 1 19 HELIX 28 AD1 ASN B 95 SER B 102 1 8 HELIX 29 AD2 THR B 103 SER B 128 1 26 HELIX 30 AD3 GLY B 142 CYS B 151 1 10 HELIX 31 AD4 PRO B 167 GLY B 173 1 7 HELIX 32 AD5 GLY B 179 LYS B 187 1 9 HELIX 33 AD6 ARG B 191 THR B 200 1 10 HELIX 34 AD7 ARG B 206 TRP B 213 1 8 HELIX 35 AD8 LYS B 221 ALA B 238 1 18 HELIX 36 AD9 SER B 293 GLY B 301 1 9 HELIX 37 AE1 TRP B 304 GLU B 324 1 21 HELIX 38 AE2 ASP B 337 HIS B 351 1 15 HELIX 39 AE3 HIS B 354 VAL B 373 1 20 HELIX 40 AE4 ALA B 393 ALA B 398 1 6 HELIX 41 AE5 ASN B 410 GLU B 414 5 5 HELIX 42 AE6 SER B 420 PHE B 424 5 5 HELIX 43 AE7 SER B 434 PHE B 440 1 7 HELIX 44 AE8 GLU B 443 SER B 452 1 10 HELIX 45 AE9 LYS B 459 LEU B 466 1 8 HELIX 46 AF1 ASP B 477 MET B 492 1 16 HELIX 47 AF2 SER B 493 ARG B 505 1 13 HELIX 48 AF3 THR B 511 GLY B 518 1 8 HELIX 49 AF4 GLY B 518 ASN B 529 1 12 HELIX 50 AF5 ARG B 530 GLY B 535 1 6 SHEET 1 AA1 6 TRP A 23 ASN A 28 0 SHEET 2 AA1 6 VAL A 31 ILE A 36 -1 O GLY A 35 N LYS A 24 SHEET 3 AA1 6 THR A 79 SER A 84 1 O THR A 83 N ILE A 36 SHEET 4 AA1 6 LYS A 131 VAL A 136 1 O LEU A 133 N VAL A 80 SHEET 5 AA1 6 GLU A 153 VAL A 157 1 O GLU A 153 N ALA A 134 SHEET 6 AA1 6 GLU A 218 VAL A 220 1 O GLU A 218 N LEU A 156 SHEET 1 AA2 2 SER A 54 TYR A 55 0 SHEET 2 AA2 2 GLY A 93 ALA A 94 1 O GLY A 93 N TYR A 55 SHEET 1 AA3 3 VAL A 89 CYS A 91 0 SHEET 2 AA3 3 ALA A 139 ALA A 141 1 O ALA A 139 N PHE A 90 SHEET 3 AA3 3 VAL A 164 SER A 165 1 O SER A 165 N CYS A 140 SHEET 1 AA4 7 THR A 257 ARG A 259 0 SHEET 2 AA4 7 GLY A 262 TYR A 265 -1 O GLY A 262 N ARG A 259 SHEET 3 AA4 7 LEU A 268 ASP A 273 -1 O VAL A 270 N LEU A 263 SHEET 4 AA4 7 ILE A 278 LYS A 284 -1 O ILE A 278 N ASP A 273 SHEET 5 AA4 7 THR A 329 GLU A 335 1 O VAL A 331 N PHE A 281 SHEET 6 AA4 7 SER A 377 ILE A 382 1 O SER A 377 N TRP A 330 SHEET 7 AA4 7 ARG A 401 MET A 404 1 O TYR A 403 N ILE A 382 SHEET 1 AA5 2 PHE A 388 ALA A 389 0 SHEET 2 AA5 2 ILE A 417 THR A 418 1 O THR A 418 N PHE A 388 SHEET 1 AA6 6 TRP B 23 ASN B 28 0 SHEET 2 AA6 6 VAL B 31 ILE B 36 -1 O GLY B 35 N LYS B 24 SHEET 3 AA6 6 THR B 79 SER B 84 1 O VAL B 81 N ALA B 32 SHEET 4 AA6 6 LYS B 131 VAL B 136 1 O ALA B 135 N LEU B 82 SHEET 5 AA6 6 GLU B 153 VAL B 157 1 O TYR B 155 N VAL B 136 SHEET 6 AA6 6 GLU B 218 VAL B 220 1 O GLU B 218 N LEU B 156 SHEET 1 AA7 2 SER B 54 TYR B 55 0 SHEET 2 AA7 2 GLY B 93 ALA B 94 1 O GLY B 93 N TYR B 55 SHEET 1 AA8 3 VAL B 89 CYS B 91 0 SHEET 2 AA8 3 ALA B 139 ALA B 141 1 O ALA B 139 N PHE B 90 SHEET 3 AA8 3 SER B 163 SER B 165 1 O SER B 165 N CYS B 140 SHEET 1 AA9 7 THR B 257 ARG B 259 0 SHEET 2 AA9 7 GLY B 262 TYR B 265 -1 O GLY B 262 N ARG B 259 SHEET 3 AA9 7 LEU B 268 ASP B 273 -1 O VAL B 270 N LEU B 263 SHEET 4 AA9 7 ILE B 278 LYS B 284 -1 O THR B 280 N THR B 271 SHEET 5 AA9 7 THR B 329 GLU B 335 1 O VAL B 331 N PHE B 281 SHEET 6 AA9 7 SER B 377 ILE B 382 1 O SER B 377 N TRP B 330 SHEET 7 AA9 7 ARG B 401 MET B 404 1 O TYR B 403 N ILE B 382 SHEET 1 AB1 2 PHE B 388 ALA B 389 0 SHEET 2 AB1 2 ILE B 417 THR B 418 1 O THR B 418 N PHE B 388 LINK SG CYS A 91 S2 BME A 602 1555 1555 2.12 LINK SG CYS A 111 S2 BME A 601 1555 1555 2.06 LINK SG CYS B 91 S2 BME B 602 1555 1555 2.12 LINK SG CYS B 111 S2 BME B 601 1555 1555 2.04 SITE 1 AC1 6 CYS A 111 GLY A 177 THR A 178 GLN A 524 SITE 2 AC1 6 PHE A 528 HOH A 848 SITE 1 AC2 8 ILE A 36 ILE A 38 ASN A 53 TYR A 55 SITE 2 AC2 8 VAL A 59 CYS A 91 LEU A 147 HOH A 767 SITE 1 AC3 4 VAL A 461 GLU A 462 ARG A 465 HOH A1053 SITE 1 AC4 8 ASP A 123 ARG A 126 HIS A 127 MET A 429 SITE 2 AC4 8 HIS A 432 HOH A 791 HOH A 847 HOH A 903 SITE 1 AC5 9 ASP B 123 ARG B 126 HIS B 127 MET B 429 SITE 2 AC5 9 HIS B 432 HOH B 871 HOH B 894 HOH B 898 SITE 3 AC5 9 HOH B1156 SITE 1 AC6 7 SER B 92 ASN B 95 ILE B 96 HOH B 746 SITE 2 AC6 7 HOH B 828 HOH B 844 HOH B1098 SITE 1 AC7 13 LYS B 107 VAL B 108 ASN B 109 PHE B 110 SITE 2 AC7 13 LYS B 112 PHE B 113 THR B 114 ASN B 115 SITE 3 AC7 13 GLY B 177 THR B 178 GLN B 524 PHE B 528 SITE 4 AC7 13 HOH B 790 SITE 1 AC8 14 ILE B 36 ILE B 38 ASN B 53 TYR B 55 SITE 2 AC8 14 VAL B 59 PHE B 90 SER B 92 GLY B 93 SITE 3 AC8 14 ALA B 139 CYS B 140 ALA B 141 GLY B 144 SITE 4 AC8 14 LEU B 147 HOH B 775 CRYST1 85.159 99.847 136.734 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011743 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010015 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007313 0.00000