HEADER HYDROLASE 21-NOV-08 2W45 TITLE EPSTEIN-BARR VIRUS ALKALINE NUCLEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALKALINE EXONUCLEASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NUCLEASE; COMPND 5 EC: 3.1.11.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 4; SOURCE 3 ORGANISM_COMMON: EPSTEIN-BARR VIRUS; SOURCE 4 ORGANISM_TAXID: 10376; SOURCE 5 STRAIN: B95-8; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBAC HTB KEYWDS EXONUCLEASE, ENDONUCLEASE, GAMMA-HERPESVIRUS, EBV, BGLF5, DNASE, KEYWDS 2 NUCLEASE, HYDROLASE, HERPESVIRUS, EPSTEIN-BARR VIRUS EXPDTA X-RAY DIFFRACTION AUTHOR M.BUISSON,T.GEOUI,D.FLOT,N.TARBOURIECH,W.P.BURMEISTER REVDAT 3 03-APR-19 2W45 1 SOURCE REVDAT 2 25-AUG-09 2W45 1 JRNL REVDAT 1 30-JUN-09 2W45 0 JRNL AUTH M.BUISSON,T.GEOUI,D.FLOT,N.TARBOURIECH,M.E.RESSING, JRNL AUTH 2 E.J.WIERTZ,W.P.BURMEISTER JRNL TITL A BRIDGE CROSSES THE ACTIVE SITE CANYON OF THE EPSTEIN-BARR JRNL TITL 2 VIRUS NUCLEASE WITH DNASE AND RNASE ACTIVITY. JRNL REF J.MOL.BIOL. V. 391 717 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19538972 JRNL DOI 10.1016/J.JMB.2009.06.034 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0068 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 22899 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1235 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.07 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1558 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.4240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6985 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 24 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.44000 REMARK 3 B22 (A**2) : 1.03000 REMARK 3 B33 (A**2) : -1.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.92000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.484 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.308 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.159 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.919 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.828 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7148 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9692 ; 2.085 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 879 ; 9.438 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 319 ;38.099 ;23.197 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1193 ;23.283 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 57 ;22.890 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1070 ; 0.136 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5446 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4421 ; 0.863 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7179 ; 1.676 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2727 ; 2.381 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2513 ; 4.156 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 2W45 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1290038154. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : CHANNEL CUT REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24158 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 71.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 5.770 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.580 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: PHASING USED 6 INCOMPLETE DATASETS COLLECTED AT DIFFERENT REMARK 200 WAVELENGTH WITH SLIGHTLY DIFFERENT HA PARAMETERS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN AT 4.5 MG/ML IN 250 MM NACL, REMARK 280 20MM TRIS PH 7.5, RESERVOIR:10 MM DTT, 10 MM MGCL2, 0.1M HEPES REMARK 280 PH 7.0, 1.5% PEG 400 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.89350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 VAL A 4 REMARK 465 ASP A 5 REMARK 465 GLU A 6 REMARK 465 ASN A 76 REMARK 465 ASP A 77 REMARK 465 SER A 78 REMARK 465 LYS A 79 REMARK 465 PRO A 148 REMARK 465 ILE A 149 REMARK 465 SER A 150 REMARK 465 THR A 151 REMARK 465 ASN A 152 REMARK 465 HIS A 153 REMARK 465 TYR A 154 REMARK 465 GLU A 467 REMARK 465 SER A 468 REMARK 465 THR A 469 REMARK 465 PRO A 470 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 VAL B 4 REMARK 465 ASP B 5 REMARK 465 GLU B 6 REMARK 465 LEU B 7 REMARK 465 GLN B 74 REMARK 465 GLU B 75 REMARK 465 ASN B 76 REMARK 465 ASP B 77 REMARK 465 SER B 78 REMARK 465 LYS B 79 REMARK 465 ASP B 80 REMARK 465 ALA B 147 REMARK 465 PRO B 148 REMARK 465 ILE B 149 REMARK 465 SER B 150 REMARK 465 THR B 151 REMARK 465 ASN B 152 REMARK 465 HIS B 153 REMARK 465 TYR B 154 REMARK 465 PRO B 377 REMARK 465 GLY B 378 REMARK 465 ARG B 379 REMARK 465 PHE B 463 REMARK 465 ALA B 464 REMARK 465 ASP B 465 REMARK 465 ASP B 466 REMARK 465 GLU B 467 REMARK 465 SER B 468 REMARK 465 THR B 469 REMARK 465 PRO B 470 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 271 NH1 ARG B 298 1.70 REMARK 500 O LEU A 294 CD LYS A 295 1.71 REMARK 500 O THR B 63 OD2 ASP B 67 1.85 REMARK 500 NH1 ARG A 300 CD1 LEU A 302 2.14 REMARK 500 NH1 ARG A 45 O GLY A 196 2.16 REMARK 500 OD2 ASP A 412 OG SER A 414 2.16 REMARK 500 O SER A 460 N LEU A 462 2.16 REMARK 500 NH2 ARG B 164 OE2 GLU B 416 2.18 REMARK 500 O LYS B 131 CG2 THR B 135 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 165 CB CYS A 165 SG -0.104 REMARK 500 CYS B 222 CB CYS B 222 SG -0.106 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 7 CA - CB - CG ANGL. DEV. = 14.5 DEGREES REMARK 500 ARG A 24 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 PRO A 42 C - N - CD ANGL. DEV. = -14.9 DEGREES REMARK 500 PRO B 42 C - N - CD ANGL. DEV. = -18.3 DEGREES REMARK 500 LEU B 84 CB - CG - CD1 ANGL. DEV. = -11.8 DEGREES REMARK 500 SER B 128 N - CA - CB ANGL. DEV. = -9.7 DEGREES REMARK 500 CYS B 381 N - CA - C ANGL. DEV. = 16.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 9 76.37 63.38 REMARK 500 PRO A 26 -60.70 -18.34 REMARK 500 ALA A 30 -71.26 -46.15 REMARK 500 ASN A 34 58.22 -96.59 REMARK 500 ARG A 37 -159.99 -85.22 REMARK 500 THR A 63 3.22 -69.51 REMARK 500 LEU A 84 -44.10 -22.86 REMARK 500 GLN A 113 83.12 5.15 REMARK 500 LYS A 142 -39.30 -39.95 REMARK 500 ALA A 181 154.74 -47.72 REMARK 500 ILE A 197 -35.55 -134.71 REMARK 500 ASN A 207 85.17 70.47 REMARK 500 PHE A 239 -27.16 83.09 REMARK 500 PRO A 244 -78.80 -62.96 REMARK 500 SER A 245 -38.46 -31.56 REMARK 500 LYS A 255 -73.50 -40.76 REMARK 500 ASP A 275 150.16 -40.57 REMARK 500 SER A 280 -146.01 -71.28 REMARK 500 LYS A 295 115.16 146.08 REMARK 500 ASP A 296 -168.24 128.98 REMARK 500 PRO A 304 80.14 -65.10 REMARK 500 PRO A 329 11.09 -62.91 REMARK 500 GLU A 331 14.61 -145.00 REMARK 500 ASN A 332 38.72 -141.27 REMARK 500 ALA A 333 58.62 32.12 REMARK 500 PRO A 350 3.97 -68.25 REMARK 500 HIS A 371 42.65 -99.44 REMARK 500 SER A 372 34.91 -151.16 REMARK 500 SER A 382 126.03 -30.55 REMARK 500 PRO A 400 115.62 -28.45 REMARK 500 ALA A 401 -52.03 -26.88 REMARK 500 ASP A 408 19.93 -158.24 REMARK 500 VAL A 421 116.90 -168.88 REMARK 500 ASN A 450 51.72 -113.09 REMARK 500 THR A 451 -38.71 -137.52 REMARK 500 ALA A 455 102.74 -8.42 REMARK 500 ASP A 465 -32.66 160.36 REMARK 500 ASP B 9 97.98 -0.15 REMARK 500 GLU B 58 9.00 -58.65 REMARK 500 PHE B 59 9.80 -153.31 REMARK 500 GLU B 62 95.31 -36.95 REMARK 500 GLN B 113 -68.74 -90.96 REMARK 500 SER B 114 93.93 17.32 REMARK 500 GLU B 115 3.22 125.63 REMARK 500 LEU B 122 -8.25 -55.52 REMARK 500 LYS B 131 5.34 -68.79 REMARK 500 PRO B 140 32.28 -83.75 REMARK 500 CYS B 178 -142.68 -102.23 REMARK 500 ALA B 181 41.19 -72.58 REMARK 500 SER B 182 -0.81 -150.27 REMARK 500 REMARK 500 THIS ENTRY HAS 78 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 41 PRO A 42 107.36 REMARK 500 GLY A 303 PRO A 304 147.79 REMARK 500 GLU B 8 ASP B 9 -91.28 REMARK 500 MET B 41 PRO B 42 117.01 REMARK 500 ASN B 293 LEU B 294 139.84 REMARK 500 LEU B 294 LYS B 295 -146.72 REMARK 500 ASP B 380 CYS B 381 -132.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2W4B RELATED DB: PDB REMARK 900 EPSTEIN-BARR VIRUS ALCALINE NUCLEASE D203S MUTANT DBREF 2W45 A 1 470 UNP P03217 EXON_EBV 1 470 DBREF 2W45 B 1 470 UNP P03217 EXON_EBV 1 470 SEQRES 1 A 470 MET ALA ASP VAL ASP GLU LEU GLU ASP PRO MET GLU GLU SEQRES 2 A 470 MET THR SER TYR THR PHE ALA ARG PHE LEU ARG SER PRO SEQRES 3 A 470 GLU THR GLU ALA PHE VAL ARG ASN LEU ASP ARG PRO PRO SEQRES 4 A 470 GLN MET PRO ALA MET ARG PHE VAL TYR LEU TYR CYS LEU SEQRES 5 A 470 CYS LYS GLN ILE GLN GLU PHE SER GLY GLU THR GLY PHE SEQRES 6 A 470 CYS ASP PHE VAL SER SER LEU VAL GLN GLU ASN ASP SER SEQRES 7 A 470 LYS ASP GLY PRO SER LEU LYS SER ILE TYR TRP GLY LEU SEQRES 8 A 470 GLN GLU ALA THR ASP GLU GLN ARG THR VAL LEU CYS SER SEQRES 9 A 470 TYR VAL GLU SER MET THR ARG GLY GLN SER GLU ASN LEU SEQRES 10 A 470 MET TRP ASP ILE LEU ARG ASN GLY ILE ILE SER SER SER SEQRES 11 A 470 LYS LEU LEU SER THR ILE LYS ASN GLY PRO THR LYS VAL SEQRES 12 A 470 PHE GLU PRO ALA PRO ILE SER THR ASN HIS TYR PHE GLY SEQRES 13 A 470 GLY PRO VAL ALA PHE GLY LEU ARG CYS GLU ASP THR VAL SEQRES 14 A 470 LYS ASP ILE VAL CYS LYS LEU ILE CYS GLY ASP ALA SER SEQRES 15 A 470 ALA ASN ARG GLN PHE GLY PHE MET ILE SER PRO THR ASP SEQRES 16 A 470 GLY ILE PHE GLY VAL SER LEU ASP LEU CYS VAL ASN VAL SEQRES 17 A 470 GLU SER GLN GLY ASP PHE ILE LEU PHE THR ASP ARG SER SEQRES 18 A 470 CYS ILE TYR GLU ILE LYS CYS ARG PHE LYS TYR LEU PHE SEQRES 19 A 470 SER LYS SER GLU PHE ASP PRO ILE TYR PRO SER TYR THR SEQRES 20 A 470 ALA LEU TYR LYS ARG PRO CYS LYS ARG SER PHE ILE ARG SEQRES 21 A 470 PHE ILE ASN SER ILE ALA ARG PRO THR VAL GLU TYR VAL SEQRES 22 A 470 PRO ASP GLY ARG LEU PRO SER GLU GLY ASP TYR LEU LEU SEQRES 23 A 470 THR GLN ASP GLU ALA TRP ASN LEU LYS ASP VAL ARG LYS SEQRES 24 A 470 ARG LYS LEU GLY PRO GLY HIS ASP LEU VAL ALA ASP SER SEQRES 25 A 470 LEU ALA ALA ASN ARG GLY VAL GLU SER MET LEU TYR VAL SEQRES 26 A 470 MET THR ASP PRO SER GLU ASN ALA GLY ARG ILE GLY ILE SEQRES 27 A 470 LYS ASP ARG VAL PRO VAL ASN ILE PHE ILE ASN PRO ARG SEQRES 28 A 470 HIS ASN TYR PHE TYR GLN VAL LEU LEU GLN TYR LYS ILE SEQRES 29 A 470 VAL GLY ASP TYR VAL ARG HIS SER GLY GLY GLY LYS PRO SEQRES 30 A 470 GLY ARG ASP CYS SER PRO ARG VAL ASN ILE VAL THR ALA SEQRES 31 A 470 PHE PHE ARG LYS ARG SER PRO LEU ASP PRO ALA THR CYS SEQRES 32 A 470 THR LEU GLY SER ASP LEU LEU LEU ASP ALA SER VAL GLU SEQRES 33 A 470 ILE PRO VAL ALA VAL LEU VAL THR PRO VAL VAL LEU PRO SEQRES 34 A 470 ASP SER VAL ILE ARG LYS THR LEU SER THR ALA ALA GLY SEQRES 35 A 470 SER TRP LYS ALA TYR ALA ASP ASN THR PHE ASP THR ALA SEQRES 36 A 470 PRO TRP VAL PRO SER GLY LEU PHE ALA ASP ASP GLU SER SEQRES 37 A 470 THR PRO SEQRES 1 B 470 MET ALA ASP VAL ASP GLU LEU GLU ASP PRO MET GLU GLU SEQRES 2 B 470 MET THR SER TYR THR PHE ALA ARG PHE LEU ARG SER PRO SEQRES 3 B 470 GLU THR GLU ALA PHE VAL ARG ASN LEU ASP ARG PRO PRO SEQRES 4 B 470 GLN MET PRO ALA MET ARG PHE VAL TYR LEU TYR CYS LEU SEQRES 5 B 470 CYS LYS GLN ILE GLN GLU PHE SER GLY GLU THR GLY PHE SEQRES 6 B 470 CYS ASP PHE VAL SER SER LEU VAL GLN GLU ASN ASP SER SEQRES 7 B 470 LYS ASP GLY PRO SER LEU LYS SER ILE TYR TRP GLY LEU SEQRES 8 B 470 GLN GLU ALA THR ASP GLU GLN ARG THR VAL LEU CYS SER SEQRES 9 B 470 TYR VAL GLU SER MET THR ARG GLY GLN SER GLU ASN LEU SEQRES 10 B 470 MET TRP ASP ILE LEU ARG ASN GLY ILE ILE SER SER SER SEQRES 11 B 470 LYS LEU LEU SER THR ILE LYS ASN GLY PRO THR LYS VAL SEQRES 12 B 470 PHE GLU PRO ALA PRO ILE SER THR ASN HIS TYR PHE GLY SEQRES 13 B 470 GLY PRO VAL ALA PHE GLY LEU ARG CYS GLU ASP THR VAL SEQRES 14 B 470 LYS ASP ILE VAL CYS LYS LEU ILE CYS GLY ASP ALA SER SEQRES 15 B 470 ALA ASN ARG GLN PHE GLY PHE MET ILE SER PRO THR ASP SEQRES 16 B 470 GLY ILE PHE GLY VAL SER LEU ASP LEU CYS VAL ASN VAL SEQRES 17 B 470 GLU SER GLN GLY ASP PHE ILE LEU PHE THR ASP ARG SER SEQRES 18 B 470 CYS ILE TYR GLU ILE LYS CYS ARG PHE LYS TYR LEU PHE SEQRES 19 B 470 SER LYS SER GLU PHE ASP PRO ILE TYR PRO SER TYR THR SEQRES 20 B 470 ALA LEU TYR LYS ARG PRO CYS LYS ARG SER PHE ILE ARG SEQRES 21 B 470 PHE ILE ASN SER ILE ALA ARG PRO THR VAL GLU TYR VAL SEQRES 22 B 470 PRO ASP GLY ARG LEU PRO SER GLU GLY ASP TYR LEU LEU SEQRES 23 B 470 THR GLN ASP GLU ALA TRP ASN LEU LYS ASP VAL ARG LYS SEQRES 24 B 470 ARG LYS LEU GLY PRO GLY HIS ASP LEU VAL ALA ASP SER SEQRES 25 B 470 LEU ALA ALA ASN ARG GLY VAL GLU SER MET LEU TYR VAL SEQRES 26 B 470 MET THR ASP PRO SER GLU ASN ALA GLY ARG ILE GLY ILE SEQRES 27 B 470 LYS ASP ARG VAL PRO VAL ASN ILE PHE ILE ASN PRO ARG SEQRES 28 B 470 HIS ASN TYR PHE TYR GLN VAL LEU LEU GLN TYR LYS ILE SEQRES 29 B 470 VAL GLY ASP TYR VAL ARG HIS SER GLY GLY GLY LYS PRO SEQRES 30 B 470 GLY ARG ASP CYS SER PRO ARG VAL ASN ILE VAL THR ALA SEQRES 31 B 470 PHE PHE ARG LYS ARG SER PRO LEU ASP PRO ALA THR CYS SEQRES 32 B 470 THR LEU GLY SER ASP LEU LEU LEU ASP ALA SER VAL GLU SEQRES 33 B 470 ILE PRO VAL ALA VAL LEU VAL THR PRO VAL VAL LEU PRO SEQRES 34 B 470 ASP SER VAL ILE ARG LYS THR LEU SER THR ALA ALA GLY SEQRES 35 B 470 SER TRP LYS ALA TYR ALA ASP ASN THR PHE ASP THR ALA SEQRES 36 B 470 PRO TRP VAL PRO SER GLY LEU PHE ALA ASP ASP GLU SER SEQRES 37 B 470 THR PRO FORMUL 3 HOH *24(H2 O) HELIX 1 1 MET A 11 THR A 15 5 5 HELIX 2 2 THR A 18 ARG A 24 1 7 HELIX 3 3 SER A 25 ASN A 34 1 10 HELIX 4 4 PRO A 42 GLN A 57 1 16 HELIX 5 5 THR A 63 LEU A 72 1 10 HELIX 6 6 SER A 83 GLU A 93 1 11 HELIX 7 7 THR A 95 ARG A 111 1 17 HELIX 8 8 ASN A 116 ASN A 124 1 9 HELIX 9 9 LYS A 131 GLY A 139 1 9 HELIX 10 10 PRO A 140 GLU A 145 5 6 HELIX 11 11 GLY A 157 LEU A 176 1 20 HELIX 12 12 PHE A 230 LEU A 233 5 4 HELIX 13 13 ILE A 242 ARG A 252 1 11 HELIX 14 14 CYS A 254 ASN A 263 1 10 HELIX 15 15 ASP A 289 ASN A 293 5 5 HELIX 16 16 HIS A 306 ARG A 317 1 12 HELIX 17 17 HIS A 352 HIS A 371 1 20 HELIX 18 18 PRO A 429 ASN A 450 1 22 HELIX 19 19 PRO A 459 PHE A 463 5 5 HELIX 20 20 ASP B 9 MET B 14 5 6 HELIX 21 21 THR B 18 ARG B 24 1 7 HELIX 22 22 SER B 25 ARG B 33 1 9 HELIX 23 23 PRO B 42 GLU B 58 1 17 HELIX 24 24 THR B 63 LEU B 72 1 10 HELIX 25 25 SER B 83 GLU B 93 1 11 HELIX 26 26 THR B 95 MET B 109 1 15 HELIX 27 27 ASN B 116 LEU B 122 1 7 HELIX 28 28 LYS B 131 GLY B 139 1 9 HELIX 29 29 PRO B 140 GLU B 145 1 6 HELIX 30 30 GLY B 157 LYS B 175 1 19 HELIX 31 31 PHE B 230 LEU B 233 5 4 HELIX 32 32 ILE B 242 ARG B 252 1 11 HELIX 33 33 CYS B 254 ASN B 263 1 10 HELIX 34 34 ASP B 289 ASN B 293 5 5 HELIX 35 35 HIS B 306 ARG B 317 1 12 HELIX 36 36 ASP B 328 ASN B 332 5 5 HELIX 37 37 HIS B 352 HIS B 371 1 20 HELIX 38 38 PRO B 429 ASN B 450 1 22 SHEET 1 AA 3 ILE A 127 SER A 128 0 SHEET 2 AA 3 PHE A 198 VAL A 200 1 N GLY A 199 O ILE A 127 SHEET 3 AA 3 MET A 190 ILE A 191 -1 O MET A 190 N VAL A 200 SHEET 1 AB 7 ALA A 183 ASN A 184 0 SHEET 2 AB 7 LEU A 204 GLN A 211 -1 O CYS A 205 N ASN A 184 SHEET 3 AB 7 PHE A 214 CYS A 228 -1 O PHE A 214 N GLN A 211 SHEET 4 AB 7 ARG A 384 ARG A 393 1 O ARG A 384 N ILE A 223 SHEET 5 AB 7 ILE A 417 PRO A 425 -1 O ILE A 417 N ARG A 393 SHEET 6 AB 7 GLU A 320 MET A 326 -1 O MET A 322 N VAL A 423 SHEET 7 AB 7 ILE A 338 ASN A 345 -1 N LYS A 339 O VAL A 325 SHEET 1 AC 3 VAL A 270 TYR A 272 0 SHEET 2 AC 3 LEU A 285 THR A 287 1 O LEU A 285 N GLU A 271 SHEET 3 AC 3 PHE A 347 ILE A 348 -1 O PHE A 347 N LEU A 286 SHEET 1 AD 3 ARG A 335 ILE A 336 0 SHEET 2 AD 3 THR A 404 LEU A 405 1 O THR A 404 N ILE A 336 SHEET 3 AD 3 LEU A 409 LEU A 410 -1 O LEU A 409 N LEU A 405 SHEET 1 BA 3 ILE B 127 SER B 128 0 SHEET 2 BA 3 PHE B 198 VAL B 200 1 N GLY B 199 O ILE B 127 SHEET 3 BA 3 MET B 190 ILE B 191 -1 O MET B 190 N VAL B 200 SHEET 1 BB 4 LEU B 204 GLU B 209 0 SHEET 2 BB 4 LEU B 216 CYS B 228 -1 O LEU B 216 N GLU B 209 SHEET 3 BB 4 ARG B 384 LYS B 394 1 O ARG B 384 N ILE B 223 SHEET 4 BB 4 PHE B 234 SER B 235 1 O PHE B 234 N LYS B 394 SHEET 1 BC 6 LEU B 204 GLU B 209 0 SHEET 2 BC 6 LEU B 216 CYS B 228 -1 O LEU B 216 N GLU B 209 SHEET 3 BC 6 ARG B 384 LYS B 394 1 O ARG B 384 N ILE B 223 SHEET 4 BC 6 ILE B 417 PRO B 425 -1 O ILE B 417 N ARG B 393 SHEET 5 BC 6 SER B 321 MET B 326 -1 O MET B 322 N VAL B 423 SHEET 6 BC 6 ILE B 338 VAL B 344 -1 N LYS B 339 O VAL B 325 SHEET 1 BD 3 VAL B 270 TYR B 272 0 SHEET 2 BD 3 LEU B 285 THR B 287 1 O LEU B 285 N GLU B 271 SHEET 3 BD 3 PHE B 347 ILE B 348 -1 O PHE B 347 N LEU B 286 SHEET 1 BE 2 ARG B 335 ILE B 336 0 SHEET 2 BE 2 THR B 404 LEU B 405 1 O THR B 404 N ILE B 336 CRYST1 87.510 63.787 114.131 90.00 93.59 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011427 0.000000 0.000717 0.00000 SCALE2 0.000000 0.015677 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008779 0.00000 MTRIX1 1 -0.551000 0.092000 -0.830000 70.37247 1 MTRIX2 1 0.086000 0.995000 0.054000 11.17409 1 MTRIX3 1 0.830000 -0.042000 -0.556000 -2.53560 1