HEADER HYDROLASE 01-DEC-08 2W4R TITLE CRYSTAL STRUCTURE OF THE REGULATORY DOMAIN OF HUMAN LGP2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE ATP-DEPENDENT RNA HELICASE DHX58; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: REGULATORY DOMAIN, RESIDUES 537-678; COMPND 5 SYNONYM: PROBABLE ATP-DEPENDENT HELICASE LGP2, PROTEIN D11LGP2 COMPND 6 HOMOLOG, LGP2; COMPND 7 EC: 3.6.1.-; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: 4 HG PER ASU 5 SO4 PER ASU SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS INNATE IMMUNITY, IMMUNE RESPONSE, NUCLEOTIDE-BINDING, COILED COIL, KEYWDS 2 ATP-BINDING, POLYMORPHISM, DOUBLE-STRAND RNA BINDING PROTEIN, KEYWDS 3 HELICASE, HYDROLASE, CYTOPLASM, RNA-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR D.A.PIPPIG,J.C.HELLMUTH,S.CUI,A.KIRCHHOFER,K.LAMMENS,A.LAMMENS, AUTHOR 2 A.SCHMIDT,S.ROTHENFUSSER,K.P.HOPFNER REVDAT 5 20-NOV-24 2W4R 1 REMARK REVDAT 4 13-DEC-23 2W4R 1 REMARK LINK REVDAT 3 14-APR-09 2W4R 1 JRNL REMARK REVDAT 2 03-MAR-09 2W4R 1 TITLE JRNL REVDAT 1 24-FEB-09 2W4R 0 JRNL AUTH D.A.PIPPIG,J.C.HELLMUTH,S.CUI,A.KIRCHHOFER,K.LAMMENS, JRNL AUTH 2 A.LAMMENS,A.SCHMIDT,S.ROTHENFUSSER,K.P.HOPFNER JRNL TITL THE REGULATORY DOMAIN OF THE RIG-I FAMILY ATPASE LGP2 SENSES JRNL TITL 2 DOUBLE-STRANDED RNA. JRNL REF NUCLEIC ACIDS RES. V. 37 2014 2009 JRNL REFN ISSN 0305-1048 JRNL PMID 19208642 JRNL DOI 10.1093/NAR/GKP059 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 22410 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1088 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7136 - 5.1898 0.97 2776 153 0.2259 0.2421 REMARK 3 2 5.1898 - 4.1200 0.98 2697 137 0.1666 0.2366 REMARK 3 3 4.1200 - 3.5994 0.97 2611 143 0.1798 0.2210 REMARK 3 4 3.5994 - 3.2703 0.99 2669 140 0.2123 0.2783 REMARK 3 5 3.2703 - 3.0360 1.00 2651 141 0.2289 0.3023 REMARK 3 6 3.0360 - 2.8570 1.00 2666 139 0.2505 0.3170 REMARK 3 7 2.8570 - 2.7139 1.00 2678 110 0.2524 0.3441 REMARK 3 8 2.7139 - 2.5958 0.97 2574 125 0.2672 0.3473 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 59.89 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.23450 REMARK 3 B22 (A**2) : 6.32610 REMARK 3 B33 (A**2) : -8.56070 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4158 REMARK 3 ANGLE : 1.005 5629 REMARK 3 CHIRALITY : 0.069 601 REMARK 3 PLANARITY : 0.005 724 REMARK 3 DIHEDRAL : 19.740 1524 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2W4R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1290038183. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.009 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39540 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 13.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.29000 REMARK 200 FOR SHELL : 3.580 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2QFD REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.83500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.93500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.81000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.93500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.83500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.81000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 537 REMARK 465 ALA A 538 REMARK 465 GLN A 539 REMARK 465 ARG A 540 REMARK 465 GLU A 541 REMARK 465 ASN A 542 REMARK 465 GLN A 543 REMARK 465 ILE A 597 REMARK 465 ASN A 598 REMARK 465 LYS A 599 REMARK 465 VAL A 600 REMARK 465 LEU A 675 REMARK 465 SER A 676 REMARK 465 LEU A 677 REMARK 465 ASP A 678 REMARK 465 ALA B 537 REMARK 465 ALA B 538 REMARK 465 GLN B 539 REMARK 465 ARG B 540 REMARK 465 GLU B 541 REMARK 465 ASN B 542 REMARK 465 GLN B 543 REMARK 465 PRO B 594 REMARK 465 VAL B 595 REMARK 465 VAL B 596 REMARK 465 ILE B 597 REMARK 465 ASN B 598 REMARK 465 LYS B 599 REMARK 465 VAL B 600 REMARK 465 PHE B 601 REMARK 465 LYS B 602 REMARK 465 ASP B 603 REMARK 465 ALA C 537 REMARK 465 ALA C 538 REMARK 465 GLN C 539 REMARK 465 ARG C 540 REMARK 465 GLU C 541 REMARK 465 ASN C 542 REMARK 465 PRO C 594 REMARK 465 VAL C 595 REMARK 465 VAL C 596 REMARK 465 ILE C 597 REMARK 465 ASN C 598 REMARK 465 LYS C 599 REMARK 465 SER C 673 REMARK 465 ASP C 674 REMARK 465 LEU C 675 REMARK 465 SER C 676 REMARK 465 LEU C 677 REMARK 465 ASP C 678 REMARK 465 ALA D 537 REMARK 465 ALA D 538 REMARK 465 GLN D 539 REMARK 465 ARG D 540 REMARK 465 GLU D 541 REMARK 465 ASN D 542 REMARK 465 GLN D 543 REMARK 465 PRO D 594 REMARK 465 VAL D 595 REMARK 465 VAL D 596 REMARK 465 ILE D 597 REMARK 465 ASN D 598 REMARK 465 LYS D 599 REMARK 465 VAL D 600 REMARK 465 SER D 676 REMARK 465 LEU D 677 REMARK 465 ASP D 678 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ARG A 544 REMARK 475 TYR A 625 REMARK 475 LYS A 626 REMARK 475 SER A 627 REMARK 475 ASP B 678 REMARK 475 GLN C 543 REMARK 475 VAL C 600 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ILE A 557 CD1 REMARK 480 LYS A 571 CE REMARK 480 ASN A 583 CG OD1 ND2 REMARK 480 ASP A 593 CG REMARK 480 VAL A 596 CB REMARK 480 PHE A 601 C CB CG CD1 CD2 CE1 CE2 REMARK 480 LYS A 602 CB CG CD CE NZ REMARK 480 ASP A 603 C REMARK 480 LYS A 605 CB CG CD CE NZ REMARK 480 ARG A 613 CZ NH1 NH2 REMARK 480 ARG A 636 CD NE CZ NH1 NH2 REMARK 480 GLN A 648 CG OE1 NE2 REMARK 480 LYS A 651 CE NZ REMARK 480 LEU A 672 CG CD1 CD2 REMARK 480 ASP A 674 CB CG OD1 OD2 REMARK 480 LYS B 571 NZ REMARK 480 ASP B 593 C CG REMARK 480 TRP B 604 CD1 CD2 NE1 CE2 CE3 CZ2 CZ3 REMARK 480 TRP B 604 CH2 REMARK 480 ILE B 624 CD1 REMARK 480 LYS B 650 CE NZ REMARK 480 LYS B 651 CE NZ REMARK 480 SER B 673 CA REMARK 480 ASP B 674 CG REMARK 480 ARG C 592 CD NE CZ NH1 NH2 REMARK 480 LYS C 634 CD CE NZ REMARK 480 ARG C 636 NE CZ NH1 NH2 REMARK 480 ARG C 646 CZ NH1 NH2 REMARK 480 ILE C 647 CD1 REMARK 480 LYS C 650 CB CG CD CE NZ REMARK 480 LYS C 651 CE NZ REMARK 480 LEU C 672 CG CD1 CD2 REMARK 480 ALA D 562 CB REMARK 480 GLU D 573 CD OE1 OE2 REMARK 480 ARG D 592 CG CD NE CZ NH1 NH2 REMARK 480 LYS D 602 CG CD CE NZ REMARK 480 LYS D 605 CE NZ REMARK 480 ILE D 610 CD1 REMARK 480 SER D 611 OG REMARK 480 ARG D 613 O REMARK 480 GLU D 617 CG CD OE1 OE2 REMARK 480 ILE D 624 CG1 CG2 CD1 REMARK 480 ARG D 636 CD NE NH2 REMARK 480 SER D 637 OG REMARK 480 LYS D 650 CB CG CD CE NZ REMARK 480 LYS D 651 CG CD CE NZ REMARK 480 ARG D 654 CD NE CZ NH1 NH2 REMARK 480 ASP D 663 CG REMARK 480 LEU D 672 CD2 REMARK 480 ASP D 674 CG REMARK 480 LEU D 675 O CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 545 -170.56 -68.29 REMARK 500 ASN A 558 -69.56 -91.42 REMARK 500 ASN A 583 -8.02 -56.17 REMARK 500 ASP A 593 65.68 -108.55 REMARK 500 SER A 627 12.61 80.83 REMARK 500 SER A 653 0.31 -63.76 REMARK 500 PRO A 656 37.37 -67.84 REMARK 500 CYS A 668 48.37 -70.13 REMARK 500 GLU B 573 44.26 37.38 REMARK 500 THR B 575 -82.97 -97.61 REMARK 500 PRO B 656 31.77 -75.25 REMARK 500 SER C 591 -151.64 -76.76 REMARK 500 PRO C 606 155.37 -49.96 REMARK 500 LYS C 626 -129.83 56.22 REMARK 500 PRO C 656 46.89 -77.05 REMARK 500 ASN C 671 59.99 -107.08 REMARK 500 ASN D 558 -81.81 -90.95 REMARK 500 ASN D 586 -17.07 -46.91 REMARK 500 ARG D 592 80.02 -63.87 REMARK 500 LYS D 602 -69.98 -139.16 REMARK 500 LYS D 626 -117.29 53.28 REMARK 500 PRO D 656 39.98 -71.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 SO4 C 1675 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A1675 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 556 SG REMARK 620 2 CYS A 559 SG 111.6 REMARK 620 3 CYS A 612 SG 111.3 96.7 REMARK 620 4 CYS A 615 SG 97.3 120.0 120.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG B1679 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 556 SG REMARK 620 2 CYS B 559 SG 115.1 REMARK 620 3 CYS B 612 SG 107.6 107.4 REMARK 620 4 CYS B 615 SG 108.5 108.1 110.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG C1674 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 556 SG REMARK 620 2 CYS C 559 SG 105.4 REMARK 620 3 CYS C 612 SG 109.6 104.1 REMARK 620 4 CYS C 615 SG 108.5 111.6 116.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG D1676 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 556 SG REMARK 620 2 CYS D 559 SG 120.4 REMARK 620 3 CYS D 615 SG 98.1 119.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 1675 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG B 1679 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG D 1676 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG C 1674 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1676 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1680 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1673 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1675 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 1677 DBREF 2W4R A 537 678 UNP Q96C10 DHX58_HUMAN 537 678 DBREF 2W4R B 537 678 UNP Q96C10 DHX58_HUMAN 537 678 DBREF 2W4R C 537 678 UNP Q96C10 DHX58_HUMAN 537 678 DBREF 2W4R D 537 678 UNP Q96C10 DHX58_HUMAN 537 678 SEQRES 1 A 142 ALA ALA GLN ARG GLU ASN GLN ARG GLN GLN PHE PRO VAL SEQRES 2 A 142 GLU HIS VAL GLN LEU LEU CYS ILE ASN CYS MET VAL ALA SEQRES 3 A 142 VAL GLY HIS GLY SER ASP LEU ARG LYS VAL GLU GLY THR SEQRES 4 A 142 HIS HIS VAL ASN VAL ASN PRO ASN PHE SER ASN TYR TYR SEQRES 5 A 142 ASN VAL SER ARG ASP PRO VAL VAL ILE ASN LYS VAL PHE SEQRES 6 A 142 LYS ASP TRP LYS PRO GLY GLY VAL ILE SER CYS ARG ASN SEQRES 7 A 142 CYS GLY GLU VAL TRP GLY LEU GLN MET ILE TYR LYS SER SEQRES 8 A 142 VAL LYS LEU PRO VAL LEU LYS VAL ARG SER MET LEU LEU SEQRES 9 A 142 GLU THR PRO GLN GLY ARG ILE GLN ALA LYS LYS TRP SER SEQRES 10 A 142 ARG VAL PRO PHE SER VAL PRO ASP PHE ASP PHE LEU GLN SEQRES 11 A 142 HIS CYS ALA GLU ASN LEU SER ASP LEU SER LEU ASP SEQRES 1 B 142 ALA ALA GLN ARG GLU ASN GLN ARG GLN GLN PHE PRO VAL SEQRES 2 B 142 GLU HIS VAL GLN LEU LEU CYS ILE ASN CYS MET VAL ALA SEQRES 3 B 142 VAL GLY HIS GLY SER ASP LEU ARG LYS VAL GLU GLY THR SEQRES 4 B 142 HIS HIS VAL ASN VAL ASN PRO ASN PHE SER ASN TYR TYR SEQRES 5 B 142 ASN VAL SER ARG ASP PRO VAL VAL ILE ASN LYS VAL PHE SEQRES 6 B 142 LYS ASP TRP LYS PRO GLY GLY VAL ILE SER CYS ARG ASN SEQRES 7 B 142 CYS GLY GLU VAL TRP GLY LEU GLN MET ILE TYR LYS SER SEQRES 8 B 142 VAL LYS LEU PRO VAL LEU LYS VAL ARG SER MET LEU LEU SEQRES 9 B 142 GLU THR PRO GLN GLY ARG ILE GLN ALA LYS LYS TRP SER SEQRES 10 B 142 ARG VAL PRO PHE SER VAL PRO ASP PHE ASP PHE LEU GLN SEQRES 11 B 142 HIS CYS ALA GLU ASN LEU SER ASP LEU SER LEU ASP SEQRES 1 C 142 ALA ALA GLN ARG GLU ASN GLN ARG GLN GLN PHE PRO VAL SEQRES 2 C 142 GLU HIS VAL GLN LEU LEU CYS ILE ASN CYS MET VAL ALA SEQRES 3 C 142 VAL GLY HIS GLY SER ASP LEU ARG LYS VAL GLU GLY THR SEQRES 4 C 142 HIS HIS VAL ASN VAL ASN PRO ASN PHE SER ASN TYR TYR SEQRES 5 C 142 ASN VAL SER ARG ASP PRO VAL VAL ILE ASN LYS VAL PHE SEQRES 6 C 142 LYS ASP TRP LYS PRO GLY GLY VAL ILE SER CYS ARG ASN SEQRES 7 C 142 CYS GLY GLU VAL TRP GLY LEU GLN MET ILE TYR LYS SER SEQRES 8 C 142 VAL LYS LEU PRO VAL LEU LYS VAL ARG SER MET LEU LEU SEQRES 9 C 142 GLU THR PRO GLN GLY ARG ILE GLN ALA LYS LYS TRP SER SEQRES 10 C 142 ARG VAL PRO PHE SER VAL PRO ASP PHE ASP PHE LEU GLN SEQRES 11 C 142 HIS CYS ALA GLU ASN LEU SER ASP LEU SER LEU ASP SEQRES 1 D 142 ALA ALA GLN ARG GLU ASN GLN ARG GLN GLN PHE PRO VAL SEQRES 2 D 142 GLU HIS VAL GLN LEU LEU CYS ILE ASN CYS MET VAL ALA SEQRES 3 D 142 VAL GLY HIS GLY SER ASP LEU ARG LYS VAL GLU GLY THR SEQRES 4 D 142 HIS HIS VAL ASN VAL ASN PRO ASN PHE SER ASN TYR TYR SEQRES 5 D 142 ASN VAL SER ARG ASP PRO VAL VAL ILE ASN LYS VAL PHE SEQRES 6 D 142 LYS ASP TRP LYS PRO GLY GLY VAL ILE SER CYS ARG ASN SEQRES 7 D 142 CYS GLY GLU VAL TRP GLY LEU GLN MET ILE TYR LYS SER SEQRES 8 D 142 VAL LYS LEU PRO VAL LEU LYS VAL ARG SER MET LEU LEU SEQRES 9 D 142 GLU THR PRO GLN GLY ARG ILE GLN ALA LYS LYS TRP SER SEQRES 10 D 142 ARG VAL PRO PHE SER VAL PRO ASP PHE ASP PHE LEU GLN SEQRES 11 D 142 HIS CYS ALA GLU ASN LEU SER ASP LEU SER LEU ASP HET HG A1675 1 HET SO4 A1676 5 HET HG B1679 1 HET SO4 B1680 5 HET SO4 C1673 5 HET HG C1674 1 HET SO4 C1675 5 HET HG D1676 1 HET SO4 D1677 5 HETNAM HG MERCURY (II) ION HETNAM SO4 SULFATE ION FORMUL 5 HG 4(HG 2+) FORMUL 6 SO4 5(O4 S 2-) FORMUL 14 HOH *128(H2 O) HELIX 1 1 PRO A 548 HIS A 551 5 4 HELIX 2 2 ASN A 581 ASN A 586 5 6 HELIX 3 3 LYS A 651 VAL A 655 5 5 HELIX 4 4 ASP A 663 CYS A 668 1 6 HELIX 5 5 PRO B 548 HIS B 551 5 4 HELIX 6 6 GLU B 573 THR B 575 5 3 HELIX 7 7 ASN B 581 ASN B 586 5 6 HELIX 8 8 LYS B 651 VAL B 655 5 5 HELIX 9 9 ASP B 663 SER B 676 1 14 HELIX 10 10 PRO C 548 HIS C 551 5 4 HELIX 11 11 ASN C 581 ASN C 586 5 6 HELIX 12 12 LYS C 651 VAL C 655 5 5 HELIX 13 13 ASP C 663 ASN C 671 1 9 HELIX 14 14 PRO D 548 HIS D 551 5 4 HELIX 15 15 ASN D 581 ASN D 586 5 6 HELIX 16 16 LYS D 651 VAL D 655 5 5 HELIX 17 17 ASP D 663 SER D 673 1 11 SHEET 1 AA 4 ALA A 562 HIS A 565 0 SHEET 2 AA 4 GLN A 553 CYS A 556 -1 O LEU A 554 N VAL A 563 SHEET 3 AA 4 MET A 638 THR A 642 -1 O LEU A 639 N LEU A 555 SHEET 4 AA 4 GLY A 645 ILE A 647 -1 O GLY A 645 N THR A 642 SHEET 1 AB 2 LEU A 569 VAL A 572 0 SHEET 2 AB 2 HIS A 576 ASN A 579 -1 O HIS A 576 N VAL A 572 SHEET 1 AC 4 TYR A 588 SER A 591 0 SHEET 2 AC 4 LYS A 605 CYS A 612 -1 O VAL A 609 N SER A 591 SHEET 3 AC 4 VAL A 618 TYR A 625 -1 N TRP A 619 O ILE A 610 SHEET 4 AC 4 VAL A 628 LEU A 633 -1 O VAL A 628 N TYR A 625 SHEET 1 BA 4 ALA B 562 HIS B 565 0 SHEET 2 BA 4 GLN B 553 CYS B 556 -1 O LEU B 554 N VAL B 563 SHEET 3 BA 4 MET B 638 THR B 642 -1 O LEU B 639 N LEU B 555 SHEET 4 BA 4 GLY B 645 ILE B 647 -1 O GLY B 645 N THR B 642 SHEET 1 BB 2 LEU B 569 VAL B 572 0 SHEET 2 BB 2 HIS B 576 ASN B 579 -1 O HIS B 576 N VAL B 572 SHEET 1 BC 4 TYR B 588 SER B 591 0 SHEET 2 BC 4 LYS B 605 CYS B 612 -1 O VAL B 609 N SER B 591 SHEET 3 BC 4 VAL B 618 TYR B 625 -1 N TRP B 619 O ILE B 610 SHEET 4 BC 4 VAL B 628 LEU B 633 -1 O VAL B 628 N TYR B 625 SHEET 1 CA 4 ALA C 562 HIS C 565 0 SHEET 2 CA 4 GLN C 553 CYS C 556 -1 O LEU C 554 N VAL C 563 SHEET 3 CA 4 MET C 638 THR C 642 -1 O LEU C 639 N LEU C 555 SHEET 4 CA 4 GLY C 645 ILE C 647 -1 O GLY C 645 N THR C 642 SHEET 1 CB 2 LEU C 569 VAL C 572 0 SHEET 2 CB 2 HIS C 576 ASN C 579 -1 O HIS C 576 N VAL C 572 SHEET 1 CC 4 TYR C 588 VAL C 590 0 SHEET 2 CC 4 LYS C 605 CYS C 612 -1 O SER C 611 N ASN C 589 SHEET 3 CC 4 VAL C 618 TYR C 625 -1 N TRP C 619 O ILE C 610 SHEET 4 CC 4 VAL C 628 LEU C 633 -1 O VAL C 628 N TYR C 625 SHEET 1 DA 4 ALA D 562 HIS D 565 0 SHEET 2 DA 4 GLN D 553 CYS D 556 -1 O LEU D 554 N GLY D 564 SHEET 3 DA 4 MET D 638 GLU D 641 -1 O LEU D 639 N LEU D 555 SHEET 4 DA 4 ARG D 646 ILE D 647 -1 O ILE D 647 N LEU D 640 SHEET 1 DB 2 LEU D 569 VAL D 572 0 SHEET 2 DB 2 HIS D 576 ASN D 579 -1 O HIS D 576 N VAL D 572 SHEET 1 DC 4 TYR D 588 SER D 591 0 SHEET 2 DC 4 LYS D 605 CYS D 612 -1 O VAL D 609 N SER D 591 SHEET 3 DC 4 VAL D 618 TYR D 625 -1 N TRP D 619 O ILE D 610 SHEET 4 DC 4 VAL D 628 LEU D 633 -1 O VAL D 628 N TYR D 625 SSBOND 1 CYS A 668 CYS C 668 1555 4446 2.04 SSBOND 2 CYS B 668 CYS D 668 1555 3645 2.02 LINK SG CYS A 556 HG HG A1675 1555 1555 2.55 LINK SG CYS A 559 HG HG A1675 1555 1555 2.73 LINK SG CYS A 612 HG HG A1675 1555 1555 2.67 LINK SG CYS A 615 HG HG A1675 1555 1555 2.58 LINK SG CYS B 556 HG HG B1679 1555 1555 2.42 LINK SG CYS B 559 HG HG B1679 1555 1555 2.51 LINK SG CYS B 612 HG HG B1679 1555 1555 2.56 LINK SG CYS B 615 HG HG B1679 1555 1555 2.60 LINK SG CYS C 556 HG HG C1674 1555 1555 2.52 LINK SG CYS C 559 HG HG C1674 1555 1555 2.54 LINK SG CYS C 612 HG HG C1674 1555 1555 2.57 LINK SG CYS C 615 HG HG C1674 1555 1555 2.61 LINK SG CYS D 556 HG HG D1676 1555 1555 2.64 LINK SG CYS D 559 HG HG D1676 1555 1555 2.79 LINK SG CYS D 615 HG HG D1676 1555 1555 2.77 SITE 1 AC1 4 CYS A 556 CYS A 559 CYS A 612 CYS A 615 SITE 1 AC2 4 CYS B 556 CYS B 559 CYS B 612 CYS B 615 SITE 1 AC3 4 CYS D 556 CYS D 559 CYS D 612 CYS D 615 SITE 1 AC4 4 CYS C 556 CYS C 559 CYS C 612 CYS C 615 SITE 1 AC5 4 HIS A 565 ASN A 581 ASN A 583 HOH A2017 SITE 1 AC6 4 HIS B 565 ASN B 581 ASN B 583 HOH B2037 SITE 1 AC7 4 HIS C 565 ASN C 581 ASN C 583 HOH C2039 SITE 1 AC8 6 GLU C 550 GLN C 553 HIS C 565 SER C 567 SITE 2 AC8 6 HOH C2040 HOH C2041 SITE 1 AC9 4 HIS D 565 ASN D 581 ASN D 583 HOH D2016 CRYST1 63.670 75.620 147.870 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015706 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013224 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006763 0.00000