data_2W50 # _entry.id 2W50 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.308 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2W50 PDBE EBI-38243 WWPDB D_1290038243 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2W50 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2008-12-03 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Parkash, V.' 1 'Lindholm, P.' 2 'Peranen, J.' 3 'Kalkkinen, N.' 4 'Oksanen, E.' 5 'Saarma, M.' 6 'Leppanen, V.M.' 7 'Goldman, A.' 8 # _citation.id primary _citation.title 'The Structure of the Conserved Neurotrophic Factors Manf and Cdnf Explains Why They are Bifunctional.' _citation.journal_abbrev 'Protein Eng.Des.Sel.' _citation.journal_volume 22 _citation.page_first 233 _citation.page_last ? _citation.year 2009 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1741-0126 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19258449 _citation.pdbx_database_id_DOI 10.1093/PROTEIN/GZN080 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Parkash, V.' 1 ? primary 'Lindholm, P.' 2 ? primary 'Peranen, J.' 3 ? primary 'Kalkkinen, N.' 4 ? primary 'Oksanen, E.' 5 ? primary 'Saarma, M.' 6 ? primary 'Leppanen, V.M.' 7 ? primary 'Goldman, A.' 8 ? # _cell.entry_id 2W50 _cell.length_a 48.300 _cell.length_b 42.040 _cell.length_c 51.990 _cell.angle_alpha 90.00 _cell.angle_beta 97.67 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2W50 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ARMET-LIKE PROTEIN 1' 11750.771 2 ? ? 'N-TERMINAL DOMAIN, RESIDUES 32-133' ? 2 non-polymer syn 'PHOSPHATE ION' 94.971 4 ? ? ? ? 3 water nat water 18.015 145 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CONSERVED DOPAMINE NEUROTROPHIC FACTOR, CDNF' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;RPGADCEVCKEFLNRFYKSLIDRGVNFSLDTIEKELISFCLDTKGKENRLCYYLGATKDAATKILSEVTRPMSVHMPAMK ICEKLKKLDSQICELKYEKTLD ; _entity_poly.pdbx_seq_one_letter_code_can ;RPGADCEVCKEFLNRFYKSLIDRGVNFSLDTIEKELISFCLDTKGKENRLCYYLGATKDAATKILSEVTRPMSVHMPAMK ICEKLKKLDSQICELKYEKTLD ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ARG n 1 2 PRO n 1 3 GLY n 1 4 ALA n 1 5 ASP n 1 6 CYS n 1 7 GLU n 1 8 VAL n 1 9 CYS n 1 10 LYS n 1 11 GLU n 1 12 PHE n 1 13 LEU n 1 14 ASN n 1 15 ARG n 1 16 PHE n 1 17 TYR n 1 18 LYS n 1 19 SER n 1 20 LEU n 1 21 ILE n 1 22 ASP n 1 23 ARG n 1 24 GLY n 1 25 VAL n 1 26 ASN n 1 27 PHE n 1 28 SER n 1 29 LEU n 1 30 ASP n 1 31 THR n 1 32 ILE n 1 33 GLU n 1 34 LYS n 1 35 GLU n 1 36 LEU n 1 37 ILE n 1 38 SER n 1 39 PHE n 1 40 CYS n 1 41 LEU n 1 42 ASP n 1 43 THR n 1 44 LYS n 1 45 GLY n 1 46 LYS n 1 47 GLU n 1 48 ASN n 1 49 ARG n 1 50 LEU n 1 51 CYS n 1 52 TYR n 1 53 TYR n 1 54 LEU n 1 55 GLY n 1 56 ALA n 1 57 THR n 1 58 LYS n 1 59 ASP n 1 60 ALA n 1 61 ALA n 1 62 THR n 1 63 LYS n 1 64 ILE n 1 65 LEU n 1 66 SER n 1 67 GLU n 1 68 VAL n 1 69 THR n 1 70 ARG n 1 71 PRO n 1 72 MET n 1 73 SER n 1 74 VAL n 1 75 HIS n 1 76 MET n 1 77 PRO n 1 78 ALA n 1 79 MET n 1 80 LYS n 1 81 ILE n 1 82 CYS n 1 83 GLU n 1 84 LYS n 1 85 LEU n 1 86 LYS n 1 87 LYS n 1 88 LEU n 1 89 ASP n 1 90 SER n 1 91 GLN n 1 92 ILE n 1 93 CYS n 1 94 GLU n 1 95 LEU n 1 96 LYS n 1 97 TYR n 1 98 GLU n 1 99 LYS n 1 100 THR n 1 101 LEU n 1 102 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'SPODOPTERA FRUGIPERDA' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7108 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line SF9 _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type BACULOVIRUS _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ARMEL_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q49AH0 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2W50 A 1 ? 102 ? Q49AH0 32 ? 133 ? 6 107 2 1 2W50 B 1 ? 102 ? Q49AH0 32 ? 133 ? 6 107 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2W50 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.4 _exptl_crystal.density_percent_sol 53 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;CRYSTALS OF CDNF AT 10-20 MG/ML WERE GROWN IN SITTING DROPS OVER A RESERVOIR SOLUTION OF 100 MM NA-ACETATE, PH 4.6, 0.2 M NH4-ACETATE AND 25-30 % MME-PEG 2000. ; # _diffrn.id 1 _diffrn.ambient_temp 93 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.933 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-3' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-3 _diffrn_source.pdbx_wavelength 0.933 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2W50 _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.00 _reflns.d_resolution_high 1.60 _reflns.number_obs 110661 _reflns.number_all ? _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.60 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.0 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.70 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.49 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.20 _reflns_shell.pdbx_redundancy ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2W50 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 26056 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 1.60 _refine.ls_percent_reflns_obs 99.8 _refine.ls_R_factor_obs 0.210 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.209 _refine.ls_R_factor_R_free 0.240 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1381 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.949 _refine.correlation_coeff_Fo_to_Fc_free 0.933 _refine.B_iso_mean 22.27 _refine.aniso_B[1][1] 0.06000 _refine.aniso_B[2][2] 0.30000 _refine.aniso_B[3][3] -0.56000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] -0.73000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.102 _refine.pdbx_overall_ESU_R_Free 0.100 _refine.overall_SU_ML 0.070 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.991 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1557 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 20 _refine_hist.number_atoms_solvent 145 _refine_hist.number_atoms_total 1722 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.022 ? 1599 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.283 2.012 ? 2144 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.795 5.000 ? 192 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 27.933 24.688 ? 64 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.429 15.000 ? 334 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.471 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.086 0.200 ? 242 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.020 ? 1112 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.233 2.000 ? 967 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 3.538 3.000 ? 1564 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 3.086 2.000 ? 632 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 4.975 3.000 ? 580 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 1 A 388 0.12 0.50 'medium positional' 1 1 'X-RAY DIFFRACTION' ? ? ? 2 B 388 0.12 0.50 'medium positional' 1 2 'X-RAY DIFFRACTION' ? ? ? 1 A 390 0.54 5.00 'loose positional' 1 3 'X-RAY DIFFRACTION' ? ? ? 2 B 390 0.54 5.00 'loose positional' 1 4 'X-RAY DIFFRACTION' ? ? ? 1 A 388 0.87 2.00 'medium thermal' 1 5 'X-RAY DIFFRACTION' ? ? ? 2 B 388 0.87 2.00 'medium thermal' 1 6 'X-RAY DIFFRACTION' ? ? ? 1 A 390 0.82 10.00 'loose thermal' 1 7 'X-RAY DIFFRACTION' ? ? ? 2 B 390 0.82 10.00 'loose thermal' 1 8 'X-RAY DIFFRACTION' ? ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.60 _refine_ls_shell.d_res_low 1.64 _refine_ls_shell.number_reflns_R_work 1892 _refine_ls_shell.R_factor_R_work 0.2840 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.3380 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 100 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _struct_ncs_dom.id _struct_ncs_dom.details _struct_ncs_dom.pdbx_ens_id 1 A 1 2 B 1 # loop_ _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.selection_details 1 A 9 A 105 1 5 ? ? ? ? ? ? ? ? 1 ? 2 B 9 B 105 1 5 ? ? ? ? ? ? ? ? 1 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 2W50 _struct.title 'N-terminal domain of human conserved dopamine neurotrophic factor (CDNF)' _struct.pdbx_descriptor 'ARMET-LIKE PROTEIN 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2W50 _struct_keywords.pdbx_keywords HORMONE _struct_keywords.text 'MANF, CDNF, SAPOSIN, SECRETED, ER STRESS, ALTERNATIVE SPLICING, HORMONE, GROWTH FACTOR, NEUROTROPHIC FACTOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS A 6 ? ARG A 23 ? CYS A 11 ARG A 28 1 ? 18 HELX_P HELX_P2 2 SER A 28 ? LEU A 41 ? SER A 33 LEU A 46 1 ? 14 HELX_P HELX_P3 3 LYS A 44 ? LEU A 54 ? LYS A 49 LEU A 59 1 ? 11 HELX_P HELX_P4 4 ALA A 61 ? SER A 73 ? ALA A 66 SER A 78 1 ? 13 HELX_P HELX_P5 5 PRO A 77 ? LYS A 87 ? PRO A 82 LYS A 92 1 ? 11 HELX_P HELX_P6 6 ASP A 89 ? GLU A 94 ? ASP A 94 GLU A 99 5 ? 6 HELX_P HELX_P7 7 CYS B 6 ? ARG B 23 ? CYS B 11 ARG B 28 1 ? 18 HELX_P HELX_P8 8 SER B 28 ? ASP B 42 ? SER B 33 ASP B 47 1 ? 15 HELX_P HELX_P9 9 LYS B 44 ? LEU B 54 ? LYS B 49 LEU B 59 1 ? 11 HELX_P HELX_P10 10 ALA B 61 ? VAL B 74 ? ALA B 66 VAL B 79 1 ? 14 HELX_P HELX_P11 11 PRO B 77 ? LYS B 87 ? PRO B 82 LYS B 92 1 ? 11 HELX_P HELX_P12 12 ASP B 89 ? GLU B 94 ? ASP B 94 GLU B 99 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 6 SG ? ? ? 1_555 A CYS 93 SG ? ? A CYS 11 A CYS 98 1_555 ? ? ? ? ? ? ? 2.020 ? disulf2 disulf ? ? A CYS 9 SG ? ? ? 1_555 A CYS 82 SG ? ? A CYS 14 A CYS 87 1_555 ? ? ? ? ? ? ? 2.034 ? disulf3 disulf ? ? A CYS 40 SG ? ? ? 1_555 A CYS 51 SG ? ? A CYS 45 A CYS 56 1_555 ? ? ? ? ? ? ? 2.034 ? disulf4 disulf ? ? B CYS 6 SG ? ? ? 1_555 B CYS 93 SG ? ? B CYS 11 B CYS 98 1_555 ? ? ? ? ? ? ? 2.038 ? disulf5 disulf ? ? B CYS 9 SG ? ? ? 1_555 B CYS 82 SG ? ? B CYS 14 B CYS 87 1_555 ? ? ? ? ? ? ? 2.028 ? disulf6 disulf ? ? B CYS 40 SG ? ? ? 1_555 B CYS 51 SG ? ? B CYS 45 B CYS 56 1_555 ? ? ? ? ? ? ? 2.025 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE PO4 B 1106' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE PO4 A 1106' AC3 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE PO4 A 1107' AC4 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE PO4 B 1107' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 LYS B 46 ? LYS B 51 . ? 1_555 ? 2 AC1 5 TYR B 97 ? TYR B 102 . ? 1_555 ? 3 AC1 5 GLU B 98 ? GLU B 103 . ? 1_555 ? 4 AC1 5 HOH H . ? HOH B 2065 . ? 1_555 ? 5 AC1 5 HOH H . ? HOH B 2066 . ? 1_555 ? 6 AC2 5 LYS A 46 ? LYS A 51 . ? 1_555 ? 7 AC2 5 TYR A 97 ? TYR A 102 . ? 1_555 ? 8 AC2 5 GLU A 98 ? GLU A 103 . ? 1_555 ? 9 AC2 5 HOH G . ? HOH A 2078 . ? 1_555 ? 10 AC2 5 HOH G . ? HOH A 2079 . ? 1_555 ? 11 AC3 2 LYS A 96 ? LYS A 101 . ? 1_555 ? 12 AC3 2 LYS A 99 ? LYS A 104 . ? 1_555 ? 13 AC4 2 LYS B 96 ? LYS B 101 . ? 1_555 ? 14 AC4 2 LYS B 99 ? LYS B 104 . ? 1_555 ? # _database_PDB_matrix.entry_id 2W50 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2W50 _atom_sites.fract_transf_matrix[1][1] 0.020704 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002788 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023787 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019408 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ARG 1 6 ? ? ? A . n A 1 2 PRO 2 7 ? ? ? A . n A 1 3 GLY 3 8 ? ? ? A . n A 1 4 ALA 4 9 9 ALA ALA A . n A 1 5 ASP 5 10 10 ASP ASP A . n A 1 6 CYS 6 11 11 CYS CYS A . n A 1 7 GLU 7 12 12 GLU GLU A . n A 1 8 VAL 8 13 13 VAL VAL A . n A 1 9 CYS 9 14 14 CYS CYS A . n A 1 10 LYS 10 15 15 LYS LYS A . n A 1 11 GLU 11 16 16 GLU GLU A . n A 1 12 PHE 12 17 17 PHE PHE A . n A 1 13 LEU 13 18 18 LEU LEU A . n A 1 14 ASN 14 19 19 ASN ASN A . n A 1 15 ARG 15 20 20 ARG ARG A . n A 1 16 PHE 16 21 21 PHE PHE A . n A 1 17 TYR 17 22 22 TYR TYR A . n A 1 18 LYS 18 23 23 LYS LYS A . n A 1 19 SER 19 24 24 SER SER A . n A 1 20 LEU 20 25 25 LEU LEU A . n A 1 21 ILE 21 26 26 ILE ILE A . n A 1 22 ASP 22 27 27 ASP ASP A . n A 1 23 ARG 23 28 28 ARG ARG A . n A 1 24 GLY 24 29 29 GLY GLY A . n A 1 25 VAL 25 30 30 VAL VAL A . n A 1 26 ASN 26 31 31 ASN ASN A . n A 1 27 PHE 27 32 32 PHE PHE A . n A 1 28 SER 28 33 33 SER SER A . n A 1 29 LEU 29 34 34 LEU LEU A . n A 1 30 ASP 30 35 35 ASP ASP A . n A 1 31 THR 31 36 36 THR THR A . n A 1 32 ILE 32 37 37 ILE ILE A . n A 1 33 GLU 33 38 38 GLU GLU A . n A 1 34 LYS 34 39 39 LYS LYS A . n A 1 35 GLU 35 40 40 GLU GLU A . n A 1 36 LEU 36 41 41 LEU LEU A . n A 1 37 ILE 37 42 42 ILE ILE A . n A 1 38 SER 38 43 43 SER SER A . n A 1 39 PHE 39 44 44 PHE PHE A . n A 1 40 CYS 40 45 45 CYS CYS A . n A 1 41 LEU 41 46 46 LEU LEU A . n A 1 42 ASP 42 47 47 ASP ASP A . n A 1 43 THR 43 48 48 THR THR A . n A 1 44 LYS 44 49 49 LYS LYS A . n A 1 45 GLY 45 50 50 GLY GLY A . n A 1 46 LYS 46 51 51 LYS LYS A . n A 1 47 GLU 47 52 52 GLU GLU A . n A 1 48 ASN 48 53 53 ASN ASN A . n A 1 49 ARG 49 54 54 ARG ARG A . n A 1 50 LEU 50 55 55 LEU LEU A . n A 1 51 CYS 51 56 56 CYS CYS A . n A 1 52 TYR 52 57 57 TYR TYR A . n A 1 53 TYR 53 58 58 TYR TYR A . n A 1 54 LEU 54 59 59 LEU LEU A . n A 1 55 GLY 55 60 60 GLY GLY A . n A 1 56 ALA 56 61 61 ALA ALA A . n A 1 57 THR 57 62 62 THR THR A . n A 1 58 LYS 58 63 63 LYS LYS A . n A 1 59 ASP 59 64 64 ASP ASP A . n A 1 60 ALA 60 65 65 ALA ALA A . n A 1 61 ALA 61 66 66 ALA ALA A . n A 1 62 THR 62 67 67 THR THR A . n A 1 63 LYS 63 68 68 LYS LYS A . n A 1 64 ILE 64 69 69 ILE ILE A . n A 1 65 LEU 65 70 70 LEU LEU A . n A 1 66 SER 66 71 71 SER SER A . n A 1 67 GLU 67 72 72 GLU GLU A . n A 1 68 VAL 68 73 73 VAL VAL A . n A 1 69 THR 69 74 74 THR THR A . n A 1 70 ARG 70 75 75 ARG ARG A . n A 1 71 PRO 71 76 76 PRO PRO A . n A 1 72 MET 72 77 77 MET MET A . n A 1 73 SER 73 78 78 SER SER A . n A 1 74 VAL 74 79 79 VAL VAL A . n A 1 75 HIS 75 80 80 HIS HIS A . n A 1 76 MET 76 81 81 MET MET A . n A 1 77 PRO 77 82 82 PRO PRO A . n A 1 78 ALA 78 83 83 ALA ALA A . n A 1 79 MET 79 84 84 MET MET A . n A 1 80 LYS 80 85 85 LYS LYS A . n A 1 81 ILE 81 86 86 ILE ILE A . n A 1 82 CYS 82 87 87 CYS CYS A . n A 1 83 GLU 83 88 88 GLU GLU A . n A 1 84 LYS 84 89 89 LYS LYS A . n A 1 85 LEU 85 90 90 LEU LEU A . n A 1 86 LYS 86 91 91 LYS LYS A . n A 1 87 LYS 87 92 92 LYS LYS A . n A 1 88 LEU 88 93 93 LEU LEU A . n A 1 89 ASP 89 94 94 ASP ASP A . n A 1 90 SER 90 95 95 SER SER A . n A 1 91 GLN 91 96 96 GLN GLN A . n A 1 92 ILE 92 97 97 ILE ILE A . n A 1 93 CYS 93 98 98 CYS CYS A . n A 1 94 GLU 94 99 99 GLU GLU A . n A 1 95 LEU 95 100 100 LEU LEU A . n A 1 96 LYS 96 101 101 LYS LYS A . n A 1 97 TYR 97 102 102 TYR TYR A . n A 1 98 GLU 98 103 103 GLU GLU A . n A 1 99 LYS 99 104 104 LYS LYS A . n A 1 100 THR 100 105 105 THR THR A . n A 1 101 LEU 101 106 106 LEU LEU A . n A 1 102 ASP 102 107 ? ? ? A . n B 1 1 ARG 1 6 ? ? ? B . n B 1 2 PRO 2 7 ? ? ? B . n B 1 3 GLY 3 8 ? ? ? B . n B 1 4 ALA 4 9 9 ALA ALA B . n B 1 5 ASP 5 10 10 ASP ASP B . n B 1 6 CYS 6 11 11 CYS CYS B . n B 1 7 GLU 7 12 12 GLU GLU B . n B 1 8 VAL 8 13 13 VAL VAL B . n B 1 9 CYS 9 14 14 CYS CYS B . n B 1 10 LYS 10 15 15 LYS LYS B . n B 1 11 GLU 11 16 16 GLU GLU B . n B 1 12 PHE 12 17 17 PHE PHE B . n B 1 13 LEU 13 18 18 LEU LEU B . n B 1 14 ASN 14 19 19 ASN ASN B . n B 1 15 ARG 15 20 20 ARG ARG B . n B 1 16 PHE 16 21 21 PHE PHE B . n B 1 17 TYR 17 22 22 TYR TYR B . n B 1 18 LYS 18 23 23 LYS LYS B . n B 1 19 SER 19 24 24 SER SER B . n B 1 20 LEU 20 25 25 LEU LEU B . n B 1 21 ILE 21 26 26 ILE ILE B . n B 1 22 ASP 22 27 27 ASP ASP B . n B 1 23 ARG 23 28 28 ARG ARG B . n B 1 24 GLY 24 29 29 GLY GLY B . n B 1 25 VAL 25 30 30 VAL VAL B . n B 1 26 ASN 26 31 31 ASN ASN B . n B 1 27 PHE 27 32 32 PHE PHE B . n B 1 28 SER 28 33 33 SER SER B . n B 1 29 LEU 29 34 34 LEU LEU B . n B 1 30 ASP 30 35 35 ASP ASP B . n B 1 31 THR 31 36 36 THR THR B . n B 1 32 ILE 32 37 37 ILE ILE B . n B 1 33 GLU 33 38 38 GLU GLU B . n B 1 34 LYS 34 39 39 LYS LYS B . n B 1 35 GLU 35 40 40 GLU GLU B . n B 1 36 LEU 36 41 41 LEU LEU B . n B 1 37 ILE 37 42 42 ILE ILE B . n B 1 38 SER 38 43 43 SER SER B . n B 1 39 PHE 39 44 44 PHE PHE B . n B 1 40 CYS 40 45 45 CYS CYS B . n B 1 41 LEU 41 46 46 LEU LEU B . n B 1 42 ASP 42 47 47 ASP ASP B . n B 1 43 THR 43 48 48 THR THR B . n B 1 44 LYS 44 49 49 LYS LYS B . n B 1 45 GLY 45 50 50 GLY GLY B . n B 1 46 LYS 46 51 51 LYS LYS B . n B 1 47 GLU 47 52 52 GLU GLU B . n B 1 48 ASN 48 53 53 ASN ASN B . n B 1 49 ARG 49 54 54 ARG ARG B . n B 1 50 LEU 50 55 55 LEU LEU B . n B 1 51 CYS 51 56 56 CYS CYS B . n B 1 52 TYR 52 57 57 TYR TYR B . n B 1 53 TYR 53 58 58 TYR TYR B . n B 1 54 LEU 54 59 59 LEU LEU B . n B 1 55 GLY 55 60 60 GLY GLY B . n B 1 56 ALA 56 61 61 ALA ALA B . n B 1 57 THR 57 62 62 THR THR B . n B 1 58 LYS 58 63 63 LYS LYS B . n B 1 59 ASP 59 64 64 ASP ASP B . n B 1 60 ALA 60 65 65 ALA ALA B . n B 1 61 ALA 61 66 66 ALA ALA B . n B 1 62 THR 62 67 67 THR THR B . n B 1 63 LYS 63 68 68 LYS LYS B . n B 1 64 ILE 64 69 69 ILE ILE B . n B 1 65 LEU 65 70 70 LEU LEU B . n B 1 66 SER 66 71 71 SER SER B . n B 1 67 GLU 67 72 72 GLU GLU B . n B 1 68 VAL 68 73 73 VAL VAL B . n B 1 69 THR 69 74 74 THR THR B . n B 1 70 ARG 70 75 75 ARG ARG B . n B 1 71 PRO 71 76 76 PRO PRO B . n B 1 72 MET 72 77 77 MET MET B . n B 1 73 SER 73 78 78 SER SER B . n B 1 74 VAL 74 79 79 VAL VAL B . n B 1 75 HIS 75 80 80 HIS HIS B . n B 1 76 MET 76 81 81 MET MET B . n B 1 77 PRO 77 82 82 PRO PRO B . n B 1 78 ALA 78 83 83 ALA ALA B . n B 1 79 MET 79 84 84 MET MET B . n B 1 80 LYS 80 85 85 LYS LYS B . n B 1 81 ILE 81 86 86 ILE ILE B . n B 1 82 CYS 82 87 87 CYS CYS B . n B 1 83 GLU 83 88 88 GLU GLU B . n B 1 84 LYS 84 89 89 LYS LYS B . n B 1 85 LEU 85 90 90 LEU LEU B . n B 1 86 LYS 86 91 91 LYS LYS B . n B 1 87 LYS 87 92 92 LYS LYS B . n B 1 88 LEU 88 93 93 LEU LEU B . n B 1 89 ASP 89 94 94 ASP ASP B . n B 1 90 SER 90 95 95 SER SER B . n B 1 91 GLN 91 96 96 GLN GLN B . n B 1 92 ILE 92 97 97 ILE ILE B . n B 1 93 CYS 93 98 98 CYS CYS B . n B 1 94 GLU 94 99 99 GLU GLU B . n B 1 95 LEU 95 100 100 LEU LEU B . n B 1 96 LYS 96 101 101 LYS LYS B . n B 1 97 TYR 97 102 102 TYR TYR B . n B 1 98 GLU 98 103 103 GLU GLU B . n B 1 99 LYS 99 104 104 LYS LYS B . n B 1 100 THR 100 105 105 THR THR B . n B 1 101 LEU 101 106 ? ? ? B . n B 1 102 ASP 102 107 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 1 1106 1106 PO4 PO4 A . D 2 PO4 1 1107 1107 PO4 PO4 A . E 2 PO4 1 1106 1106 PO4 PO4 B . F 2 PO4 1 1107 1107 PO4 PO4 B . G 3 HOH 1 2001 2001 HOH HOH A . G 3 HOH 2 2002 2002 HOH HOH A . G 3 HOH 3 2003 2003 HOH HOH A . G 3 HOH 4 2004 2004 HOH HOH A . G 3 HOH 5 2005 2005 HOH HOH A . G 3 HOH 6 2006 2006 HOH HOH A . G 3 HOH 7 2007 2007 HOH HOH A . G 3 HOH 8 2008 2008 HOH HOH A . G 3 HOH 9 2009 2009 HOH HOH A . G 3 HOH 10 2010 2010 HOH HOH A . G 3 HOH 11 2011 2011 HOH HOH A . G 3 HOH 12 2012 2012 HOH HOH A . G 3 HOH 13 2013 2013 HOH HOH A . G 3 HOH 14 2014 2014 HOH HOH A . G 3 HOH 15 2015 2015 HOH HOH A . G 3 HOH 16 2016 2016 HOH HOH A . G 3 HOH 17 2017 2017 HOH HOH A . G 3 HOH 18 2018 2018 HOH HOH A . G 3 HOH 19 2019 2019 HOH HOH A . G 3 HOH 20 2020 2020 HOH HOH A . G 3 HOH 21 2021 2021 HOH HOH A . G 3 HOH 22 2022 2022 HOH HOH A . G 3 HOH 23 2023 2023 HOH HOH A . G 3 HOH 24 2024 2024 HOH HOH A . G 3 HOH 25 2025 2025 HOH HOH A . G 3 HOH 26 2026 2026 HOH HOH A . G 3 HOH 27 2027 2027 HOH HOH A . G 3 HOH 28 2028 2028 HOH HOH A . G 3 HOH 29 2029 2029 HOH HOH A . G 3 HOH 30 2030 2030 HOH HOH A . G 3 HOH 31 2031 2031 HOH HOH A . G 3 HOH 32 2032 2032 HOH HOH A . G 3 HOH 33 2033 2033 HOH HOH A . G 3 HOH 34 2034 2034 HOH HOH A . G 3 HOH 35 2035 2035 HOH HOH A . G 3 HOH 36 2036 2036 HOH HOH A . G 3 HOH 37 2037 2037 HOH HOH A . G 3 HOH 38 2038 2038 HOH HOH A . G 3 HOH 39 2039 2039 HOH HOH A . G 3 HOH 40 2040 2040 HOH HOH A . G 3 HOH 41 2041 2041 HOH HOH A . G 3 HOH 42 2042 2042 HOH HOH A . G 3 HOH 43 2043 2043 HOH HOH A . G 3 HOH 44 2044 2044 HOH HOH A . G 3 HOH 45 2045 2045 HOH HOH A . G 3 HOH 46 2046 2046 HOH HOH A . G 3 HOH 47 2047 2047 HOH HOH A . G 3 HOH 48 2048 2048 HOH HOH A . G 3 HOH 49 2049 2049 HOH HOH A . G 3 HOH 50 2050 2050 HOH HOH A . G 3 HOH 51 2051 2051 HOH HOH A . G 3 HOH 52 2052 2052 HOH HOH A . G 3 HOH 53 2053 2053 HOH HOH A . G 3 HOH 54 2054 2054 HOH HOH A . G 3 HOH 55 2055 2055 HOH HOH A . G 3 HOH 56 2056 2056 HOH HOH A . G 3 HOH 57 2057 2057 HOH HOH A . G 3 HOH 58 2058 2058 HOH HOH A . G 3 HOH 59 2059 2059 HOH HOH A . G 3 HOH 60 2060 2060 HOH HOH A . G 3 HOH 61 2061 2061 HOH HOH A . G 3 HOH 62 2062 2062 HOH HOH A . G 3 HOH 63 2063 2063 HOH HOH A . G 3 HOH 64 2064 2064 HOH HOH A . G 3 HOH 65 2065 2065 HOH HOH A . G 3 HOH 66 2066 2066 HOH HOH A . G 3 HOH 67 2067 2067 HOH HOH A . G 3 HOH 68 2068 2068 HOH HOH A . G 3 HOH 69 2069 2069 HOH HOH A . G 3 HOH 70 2070 2070 HOH HOH A . G 3 HOH 71 2071 2071 HOH HOH A . G 3 HOH 72 2072 2072 HOH HOH A . G 3 HOH 73 2073 2073 HOH HOH A . G 3 HOH 74 2074 2074 HOH HOH A . G 3 HOH 75 2075 2075 HOH HOH A . G 3 HOH 76 2076 2076 HOH HOH A . G 3 HOH 77 2077 2077 HOH HOH A . G 3 HOH 78 2078 2078 HOH HOH A . G 3 HOH 79 2079 2079 HOH HOH A . H 3 HOH 1 2001 2001 HOH HOH B . H 3 HOH 2 2002 2002 HOH HOH B . H 3 HOH 3 2003 2003 HOH HOH B . H 3 HOH 4 2004 2004 HOH HOH B . H 3 HOH 5 2005 2005 HOH HOH B . H 3 HOH 6 2006 2006 HOH HOH B . H 3 HOH 7 2007 2007 HOH HOH B . H 3 HOH 8 2008 2008 HOH HOH B . H 3 HOH 9 2009 2009 HOH HOH B . H 3 HOH 10 2010 2010 HOH HOH B . H 3 HOH 11 2011 2011 HOH HOH B . H 3 HOH 12 2012 2012 HOH HOH B . H 3 HOH 13 2013 2013 HOH HOH B . H 3 HOH 14 2014 2014 HOH HOH B . H 3 HOH 15 2015 2015 HOH HOH B . H 3 HOH 16 2016 2016 HOH HOH B . H 3 HOH 17 2017 2017 HOH HOH B . H 3 HOH 18 2018 2018 HOH HOH B . H 3 HOH 19 2019 2019 HOH HOH B . H 3 HOH 20 2020 2020 HOH HOH B . H 3 HOH 21 2021 2021 HOH HOH B . H 3 HOH 22 2022 2022 HOH HOH B . H 3 HOH 23 2023 2023 HOH HOH B . H 3 HOH 24 2024 2024 HOH HOH B . H 3 HOH 25 2025 2025 HOH HOH B . H 3 HOH 26 2026 2026 HOH HOH B . H 3 HOH 27 2027 2027 HOH HOH B . H 3 HOH 28 2028 2028 HOH HOH B . H 3 HOH 29 2029 2029 HOH HOH B . H 3 HOH 30 2030 2030 HOH HOH B . H 3 HOH 31 2031 2031 HOH HOH B . H 3 HOH 32 2032 2032 HOH HOH B . H 3 HOH 33 2033 2033 HOH HOH B . H 3 HOH 34 2034 2034 HOH HOH B . H 3 HOH 35 2035 2035 HOH HOH B . H 3 HOH 36 2036 2036 HOH HOH B . H 3 HOH 37 2037 2037 HOH HOH B . H 3 HOH 38 2038 2038 HOH HOH B . H 3 HOH 39 2039 2039 HOH HOH B . H 3 HOH 40 2040 2040 HOH HOH B . H 3 HOH 41 2041 2041 HOH HOH B . H 3 HOH 42 2042 2042 HOH HOH B . H 3 HOH 43 2043 2043 HOH HOH B . H 3 HOH 44 2044 2044 HOH HOH B . H 3 HOH 45 2045 2045 HOH HOH B . H 3 HOH 46 2046 2046 HOH HOH B . H 3 HOH 47 2047 2047 HOH HOH B . H 3 HOH 48 2048 2048 HOH HOH B . H 3 HOH 49 2049 2049 HOH HOH B . H 3 HOH 50 2050 2050 HOH HOH B . H 3 HOH 51 2051 2051 HOH HOH B . H 3 HOH 52 2052 2052 HOH HOH B . H 3 HOH 53 2053 2053 HOH HOH B . H 3 HOH 54 2054 2054 HOH HOH B . H 3 HOH 55 2055 2055 HOH HOH B . H 3 HOH 56 2056 2056 HOH HOH B . H 3 HOH 57 2057 2057 HOH HOH B . H 3 HOH 58 2058 2058 HOH HOH B . H 3 HOH 59 2059 2059 HOH HOH B . H 3 HOH 60 2060 2060 HOH HOH B . H 3 HOH 61 2061 2061 HOH HOH B . H 3 HOH 62 2062 2062 HOH HOH B . H 3 HOH 63 2063 2063 HOH HOH B . H 3 HOH 64 2064 2064 HOH HOH B . H 3 HOH 65 2065 2065 HOH HOH B . H 3 HOH 66 2066 2066 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PQS monomeric 1 2 author_and_software_defined_assembly PQS monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,G 2 1 B,E,F,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-03-17 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2019-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Experimental preparation' 5 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' exptl_crystal_grow 2 4 'Structure model' pdbx_database_proc 3 4 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_exptl_crystal_grow.method' 2 4 'Structure model' '_pdbx_database_status.recvd_author_approval' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.5.0036 ? 1 XDS 'data scaling' . ? 2 HKL2MAP phasing . ? 3 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 32 ? ? -92.64 59.65 2 1 LEU A 93 ? ? -77.49 -75.01 3 1 THR A 105 ? ? 39.09 92.88 4 1 LEU B 93 ? ? -80.22 -73.11 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LEU 106 ? CA ? A LEU 101 CA 2 1 Y 1 A LEU 106 ? C ? A LEU 101 C 3 1 Y 1 A LEU 106 ? O ? A LEU 101 O 4 1 Y 1 A LEU 106 ? CB ? A LEU 101 CB 5 1 Y 1 A LEU 106 ? CG ? A LEU 101 CG 6 1 Y 1 A LEU 106 ? CD1 ? A LEU 101 CD1 7 1 Y 1 A LEU 106 ? CD2 ? A LEU 101 CD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ARG 6 ? A ARG 1 2 1 Y 1 A PRO 7 ? A PRO 2 3 1 Y 1 A GLY 8 ? A GLY 3 4 1 Y 1 A ASP 107 ? A ASP 102 5 1 Y 1 B ARG 6 ? B ARG 1 6 1 Y 1 B PRO 7 ? B PRO 2 7 1 Y 1 B GLY 8 ? B GLY 3 8 1 Y 1 B LEU 106 ? B LEU 101 9 1 Y 1 B ASP 107 ? B ASP 102 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHATE ION' PO4 3 water HOH #