HEADER HYDROLASE 08-DEC-08 2W58 TITLE CRYSTAL STRUCTURE OF THE DNAI CAVEAT 2W58 GLN B 1211 HAS WRONG CHIRALITY FOR AN L-AMINO ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRIMOSOME COMPONENT (HELICASE LOADER); COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 108-309; COMPND 5 SYNONYM: DNAI; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS KAUSTOPHILUS HTA426; SOURCE 3 ORGANISM_TAXID: 235909; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNAI, HELICASE, ATP-BINDING, NUCLEOTIDE-BINDING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.L.TSAI,Y.H.LO,Y.J.SUN,C.D.HSIAO REVDAT 3 16-OCT-19 2W58 1 REMARK REVDAT 2 22-AUG-12 2W58 1 AUTHOR JRNL REMARK VERSN REVDAT 2 2 1 FORMUL REVDAT 1 22-DEC-09 2W58 0 JRNL AUTH K.L.TSAI,Y.H.LO,Y.J.SUN,C.D.HSIAO JRNL TITL MOLECULAR INTERPLAY BETWEEN THE REPLICATIVE HELICASE DNAC JRNL TITL 2 AND ITS LOADER PROTEIN DNAI FROM GEOBACILLUS KAUSTOPHILUS. JRNL REF J.MOL.BIOL. V. 393 1056 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19744498 JRNL DOI 10.1016/J.JMB.2009.09.002 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 24788.160 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 83.9 REMARK 3 NUMBER OF REFLECTIONS : 11410 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.100 REMARK 3 FREE R VALUE TEST SET COUNT : 925 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 60.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.028 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3077 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 166 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 20.22000 REMARK 3 B22 (A**2) : -11.93000 REMARK 3 B33 (A**2) : -8.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.31 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.33 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 2.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.690 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.570 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 5.570 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.220 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 7.090 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 41.27 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ADP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ADP.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED THE RESIDUES IN REMARK 3 CHAIN A INCLUDING 108-110, 208-210, 235- 237 AND 279-283 WERE REMARK 3 MISSING. THE RESIDUES IN CHAIN B INCLUDING 108-111, 277- 280 AND REMARK 3 305-309 WERE MISSING. REMARK 4 REMARK 4 2W58 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1290038286. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13546 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR SOLUTION 100 MM HEPES (PH REMARK 280 7.2), 50 MM MGCL2, 20% PEG POLYETHYLENE GLYCOL) 3550 AND 50 MM REMARK 280 NA2HPO4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.31600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.81800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.76500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.81800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.31600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.76500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 1710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 108 REMARK 465 GLU A 109 REMARK 465 ARG A 110 REMARK 465 LEU A 208 REMARK 465 GLN A 209 REMARK 465 ASP A 210 REMARK 465 ALA A 235 REMARK 465 MET A 236 REMARK 465 SER A 237 REMARK 465 ARG A 279 REMARK 465 GLY A 280 REMARK 465 GLU A 281 REMARK 465 GLU A 282 REMARK 465 GLU A 283 REMARK 465 ASP B 1108 REMARK 465 GLU B 1109 REMARK 465 ARG B 1110 REMARK 465 LYS B 1111 REMARK 465 MET B 1236 REMARK 465 SER B 1277 REMARK 465 GLN B 1278 REMARK 465 ARG B 1279 REMARK 465 GLY B 1280 REMARK 465 GLY B 1305 REMARK 465 PRO B 1306 REMARK 465 ASN B 1307 REMARK 465 ARG B 1308 REMARK 465 ARG B 1309 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 238 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 211 O HOH A 2031 1.57 REMARK 500 N THR B 1175 O HOH B 2048 1.95 REMARK 500 OE2 GLU B 1281 O HOH B 2079 1.99 REMARK 500 O GLN B 1211 OD1 ASN B 1214 2.07 REMARK 500 OD2 ASP B 1139 O HOH B 2035 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 212 N - CA - C ANGL. DEV. = 28.8 DEGREES REMARK 500 LEU A 274 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 ASP B1138 CB - CG - OD2 ANGL. DEV. = -9.3 DEGREES REMARK 500 ASP B1139 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 GLY B1140 N - CA - C ANGL. DEV. = -23.2 DEGREES REMARK 500 GLN B1211 N - CA - C ANGL. DEV. = 20.6 DEGREES REMARK 500 GLN B1211 O - C - N ANGL. DEV. = -12.3 DEGREES REMARK 500 GLU B1234 N - CA - C ANGL. DEV. = 23.1 DEGREES REMARK 500 ALA B1235 N - CA - C ANGL. DEV. = 19.7 DEGREES REMARK 500 SER B1237 N - CA - C ANGL. DEV. = 17.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 131 8.80 -69.31 REMARK 500 ASN A 137 -39.56 -16.23 REMARK 500 MET A 213 -34.83 -139.15 REMARK 500 ALA A 233 109.45 -166.20 REMARK 500 TRP A 239 147.97 166.49 REMARK 500 THR A 275 88.85 44.12 REMARK 500 SER A 277 -153.23 -104.59 REMARK 500 VAL A 285 -30.94 -151.49 REMARK 500 GLN B1113 56.20 -97.62 REMARK 500 ARG B1124 -8.86 -53.77 REMARK 500 LEU B1136 63.50 -62.54 REMARK 500 ASN B1137 -78.86 -49.48 REMARK 500 LYS B1160 86.41 82.88 REMARK 500 SER B1169 170.24 -57.80 REMARK 500 VAL B1172 -62.59 -125.57 REMARK 500 VAL B1190 124.70 -36.12 REMARK 500 LYS B1205 -55.78 -24.23 REMARK 500 SER B1207 -12.25 -171.23 REMARK 500 GLN B1211 -154.77 150.31 REMARK 500 ASP B1230 81.41 34.91 REMARK 500 ALA B1233 83.72 49.00 REMARK 500 GLU B1234 -171.07 70.83 REMARK 500 ALA B1235 170.26 79.29 REMARK 500 GLU B1282 -27.46 173.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN B 1211 THR B 1212 -148.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASP B1138 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG B1188 15.93 REMARK 500 GLN B1211 16.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2017 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A2018 DISTANCE = 9.30 ANGSTROMS REMARK 525 HOH A2019 DISTANCE = 8.18 ANGSTROMS REMARK 525 HOH A2024 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH A2040 DISTANCE = 7.76 ANGSTROMS REMARK 525 HOH B2008 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH B2011 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH B2013 DISTANCE = 8.15 ANGSTROMS REMARK 525 HOH B2016 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH B2017 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH B2018 DISTANCE = 8.54 ANGSTROMS REMARK 525 HOH B2019 DISTANCE = 8.02 ANGSTROMS REMARK 525 HOH B2020 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH B2021 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH B2022 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH B2023 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH B2024 DISTANCE = 9.35 ANGSTROMS REMARK 525 HOH B2025 DISTANCE = 9.70 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1311 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 175 OG1 REMARK 620 2 HOH A2045 O 81.0 REMARK 620 3 HOH A2073 O 156.9 83.8 REMARK 620 4 HOH A2074 O 67.8 81.4 92.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 1310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 2305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1311 DBREF 2W58 A 108 309 UNP Q5KWD0 Q5KWD0_GEOKA 108 309 DBREF 2W58 B 1108 1309 UNP Q5KWD0 Q5KWD0_GEOKA 108 309 SEQRES 1 A 202 ASP GLU ARG LYS ARG GLN GLU SER LEU ILE GLN SER MET SEQRES 2 A 202 PHE MET PRO ARG GLU ILE LEU ARG ALA SER LEU SER ASP SEQRES 3 A 202 VAL ASP LEU ASN ASP ASP GLY ARG ILE LYS ALA ILE ARG SEQRES 4 A 202 PHE ALA GLU ARG PHE VAL ALA GLU TYR GLU PRO GLY LYS SEQRES 5 A 202 LYS MET LYS GLY LEU TYR LEU HIS GLY SER PHE GLY VAL SEQRES 6 A 202 GLY LYS THR TYR LEU LEU ALA ALA ILE ALA ASN GLU LEU SEQRES 7 A 202 ALA LYS ARG ASN VAL SER SER LEU ILE VAL TYR VAL PRO SEQRES 8 A 202 GLU LEU PHE ARG GLU LEU LYS HIS SER LEU GLN ASP GLN SEQRES 9 A 202 THR MET ASN GLU LYS LEU ASP TYR ILE LYS LYS VAL PRO SEQRES 10 A 202 VAL LEU MET LEU ASP ASP LEU GLY ALA GLU ALA MET SER SEQRES 11 A 202 SER TRP VAL ARG ASP ASP VAL PHE GLY PRO ILE LEU GLN SEQRES 12 A 202 TYR ARG MET PHE GLU ASN LEU PRO THR PHE PHE THR SER SEQRES 13 A 202 ASN PHE ASP MET GLN GLN LEU ALA HIS HIS LEU THR TYR SEQRES 14 A 202 SER GLN ARG GLY GLU GLU GLU LYS VAL LYS ALA ALA ARG SEQRES 15 A 202 ILE MET GLU ARG ILE ARG TYR LEU ALA TYR PRO ILE GLU SEQRES 16 A 202 ILE THR GLY PRO ASN ARG ARG SEQRES 1 B 202 ASP GLU ARG LYS ARG GLN GLU SER LEU ILE GLN SER MET SEQRES 2 B 202 PHE MET PRO ARG GLU ILE LEU ARG ALA SER LEU SER ASP SEQRES 3 B 202 VAL ASP LEU ASN ASP ASP GLY ARG ILE LYS ALA ILE ARG SEQRES 4 B 202 PHE ALA GLU ARG PHE VAL ALA GLU TYR GLU PRO GLY LYS SEQRES 5 B 202 LYS MET LYS GLY LEU TYR LEU HIS GLY SER PHE GLY VAL SEQRES 6 B 202 GLY LYS THR TYR LEU LEU ALA ALA ILE ALA ASN GLU LEU SEQRES 7 B 202 ALA LYS ARG ASN VAL SER SER LEU ILE VAL TYR VAL PRO SEQRES 8 B 202 GLU LEU PHE ARG GLU LEU LYS HIS SER LEU GLN ASP GLN SEQRES 9 B 202 THR MET ASN GLU LYS LEU ASP TYR ILE LYS LYS VAL PRO SEQRES 10 B 202 VAL LEU MET LEU ASP ASP LEU GLY ALA GLU ALA MET SER SEQRES 11 B 202 SER TRP VAL ARG ASP ASP VAL PHE GLY PRO ILE LEU GLN SEQRES 12 B 202 TYR ARG MET PHE GLU ASN LEU PRO THR PHE PHE THR SER SEQRES 13 B 202 ASN PHE ASP MET GLN GLN LEU ALA HIS HIS LEU THR TYR SEQRES 14 B 202 SER GLN ARG GLY GLU GLU GLU LYS VAL LYS ALA ALA ARG SEQRES 15 B 202 ILE MET GLU ARG ILE ARG TYR LEU ALA TYR PRO ILE GLU SEQRES 16 B 202 ILE THR GLY PRO ASN ARG ARG HET ADP A1310 27 HET MG A1311 1 HET PO4 B2305 5 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 MG MG 2+ FORMUL 5 PO4 O4 P 3- FORMUL 6 HOH *166(H2 O) HELIX 1 1 ARG A 112 LEU A 116 1 5 HELIX 2 2 PRO A 123 ARG A 128 5 6 HELIX 3 3 ASP A 138 TYR A 155 1 18 HELIX 4 4 GLY A 173 LYS A 187 1 15 HELIX 5 5 VAL A 197 LEU A 204 1 8 HELIX 6 6 MET A 213 VAL A 223 1 11 HELIX 7 7 TRP A 239 ASP A 243 5 5 HELIX 8 8 VAL A 244 GLU A 255 1 12 HELIX 9 9 ASP A 266 LEU A 274 1 9 HELIX 10 10 VAL A 285 LEU A 297 1 13 HELIX 11 11 PRO B 1123 LEU B 1127 5 5 HELIX 12 12 GLY B 1140 GLU B 1154 1 15 HELIX 13 13 GLY B 1173 ARG B 1188 1 16 HELIX 14 14 VAL B 1197 LYS B 1205 1 9 HELIX 15 15 THR B 1212 VAL B 1223 1 12 HELIX 16 16 SER B 1237 VAL B 1244 1 8 HELIX 17 17 VAL B 1244 GLU B 1255 1 12 HELIX 18 18 ASP B 1266 THR B 1275 1 10 HELIX 19 19 GLU B 1282 LEU B 1297 1 16 SHEET 1 AA 6 ILE A 117 MET A 120 0 SHEET 2 AA 6 SER A 192 TYR A 196 1 O SER A 192 N GLN A 118 SHEET 3 AA 6 VAL A 225 LEU A 231 1 O VAL A 225 N LEU A 193 SHEET 4 AA 6 THR A 259 SER A 263 1 O PHE A 260 N LEU A 228 SHEET 5 AA 6 GLY A 163 HIS A 167 1 O LEU A 164 N PHE A 261 SHEET 6 AA 6 ALA A 298 GLU A 302 1 O TYR A 299 N TYR A 165 SHEET 1 BA 6 GLN B1118 MET B1120 0 SHEET 2 BA 6 LEU B1193 TYR B1196 1 O ILE B1194 N MET B1120 SHEET 3 BA 6 LEU B1226 LEU B1231 1 O MET B1227 N VAL B1195 SHEET 4 BA 6 THR B1259 SER B1263 1 O PHE B1260 N LEU B1228 SHEET 5 BA 6 GLY B1163 HIS B1167 1 O LEU B1164 N PHE B1261 SHEET 6 BA 6 ALA B1298 GLU B1302 1 O TYR B1299 N TYR B1165 LINK MG MG A1311 OG1 THR A 175 1555 1555 2.49 LINK MG MG A1311 O HOH A2045 1555 1555 2.49 LINK MG MG A1311 O HOH A2073 1555 1555 2.33 LINK MG MG A1311 O HOH A2074 1555 1555 2.42 SITE 1 AC1 13 ASP A 133 VAL A 134 GLY A 171 VAL A 172 SITE 2 AC1 13 GLY A 173 LYS A 174 THR A 175 TYR A 176 SITE 3 AC1 13 ARG A 308 MG A1311 HOH A2071 HOH A2072 SITE 4 AC1 13 HOH A2074 SITE 1 AC2 8 GLY B1171 VAL B1172 GLY B1173 LYS B1174 SITE 2 AC2 8 THR B1175 HOH B2047 HOH B2048 HOH B2091 SITE 1 AC3 5 THR A 175 ADP A1310 HOH A2045 HOH A2073 SITE 2 AC3 5 HOH A2074 CRYST1 54.632 59.530 115.636 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018304 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016798 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008648 0.00000