HEADER IMMUNE SYSTEM 16-DEC-08 2W60 TITLE ANTI CITRULLINATED COLLAGEN TYPE 2 ANTIBODY ACC4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI-CITRULLINATED COLLAGEN TYPE II FAB ACC4; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: ANTI-CITRULLINATED COLLAGEN TYPE II FAB ACC4; COMPND 6 CHAIN: B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: DBA/1; SOURCE 6 CELL_LINE: MONOCLONAL B CELL HYBRIDOMA; SOURCE 7 ORGAN: SPLEEN; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 STRAIN: DBA/1; SOURCE 13 CELL_LINE: MONOCLONAL B CELL HYBRIDOMA; SOURCE 14 ORGAN: SPLEEN KEYWDS ANTIBODY ANTI-CITRULLIN, ARTHRITIS, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR H.UYSAL,R.BOCKERMANN,K.S.NANDAKUMAR,B.SEHNERT,E.BAJTNER,A.ENGSTROM, AUTHOR 2 G.SERRE,H.BURKHARDT,M.M.G.M.THUNNISSEN,R.HOLMDAHL REVDAT 3 13-DEC-23 2W60 1 REMARK REVDAT 2 09-AUG-17 2W60 1 JRNL REMARK REVDAT 1 24-FEB-09 2W60 0 JRNL AUTH H.UYSAL,R.BOCKERMANN,K.S.NANDAKUMAR,B.SEHNERT,E.BAJTNER, JRNL AUTH 2 A.ENGSTROM,G.SERRE,H.BURKHARDT,M.M.THUNNISSEN,R.HOLMDAHL JRNL TITL STRUCTURE AND PATHOGENICITY OF ANTIBODIES SPECIFIC FOR JRNL TITL 2 CITRULLINATED COLLAGEN TYPE II IN EXPERIMENTAL ARTHRITIS. JRNL REF J. EXP. MED. V. 206 449 2009 JRNL REFN ESSN 1540-9538 JRNL PMID 19204106 JRNL DOI 10.1084/JEM.20081862 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0044 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 64528 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3399 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4729 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1890 REMARK 3 BIN FREE R VALUE SET COUNT : 235 REMARK 3 BIN FREE R VALUE : 0.2430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3321 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 522 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.92000 REMARK 3 B22 (A**2) : 1.75000 REMARK 3 B33 (A**2) : 0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.094 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.460 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3493 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2308 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4786 ; 1.462 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5683 ; 1.497 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 456 ; 6.594 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 128 ;33.538 ;24.688 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 564 ;12.265 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;15.941 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 552 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3900 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 672 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2229 ; 3.245 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3640 ; 4.748 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1264 ; 4.614 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1141 ; 6.461 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 115 REMARK 3 ORIGIN FOR THE GROUP (A): -17.1769 -9.2394 -17.5258 REMARK 3 T TENSOR REMARK 3 T11: 0.1837 T22: 0.0444 REMARK 3 T33: 0.0937 T12: 0.0033 REMARK 3 T13: -0.0026 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.4566 L22: 0.6331 REMARK 3 L33: 0.4778 L12: 0.2273 REMARK 3 L13: -0.2895 L23: -0.0817 REMARK 3 S TENSOR REMARK 3 S11: -0.0029 S12: 0.0435 S13: 0.0364 REMARK 3 S21: -0.0808 S22: 0.0304 S23: 0.0321 REMARK 3 S31: 0.0116 S32: -0.0401 S33: -0.0275 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 116 A 136 REMARK 3 ORIGIN FOR THE GROUP (A): -26.8849 -3.9351 17.3791 REMARK 3 T TENSOR REMARK 3 T11: 0.2406 T22: 0.0360 REMARK 3 T33: 0.0930 T12: -0.0090 REMARK 3 T13: 0.0032 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.2380 L22: 0.0287 REMARK 3 L33: 0.6981 L12: -0.0326 REMARK 3 L13: -0.1053 L23: 0.0545 REMARK 3 S TENSOR REMARK 3 S11: -0.0106 S12: -0.0059 S13: 0.0118 REMARK 3 S21: 0.0743 S22: -0.0013 S23: 0.0126 REMARK 3 S31: 0.0892 S32: -0.0251 S33: 0.0119 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 137 A 190 REMARK 3 ORIGIN FOR THE GROUP (A): -22.4874 2.7957 14.9541 REMARK 3 T TENSOR REMARK 3 T11: 0.1984 T22: 0.0446 REMARK 3 T33: 0.0951 T12: -0.0035 REMARK 3 T13: 0.0148 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.3588 L22: 0.8942 REMARK 3 L33: 0.4128 L12: 0.0502 REMARK 3 L13: 0.1226 L23: 0.1542 REMARK 3 S TENSOR REMARK 3 S11: 0.0155 S12: -0.0006 S13: 0.0318 REMARK 3 S21: -0.0584 S22: 0.0088 S23: -0.0393 REMARK 3 S31: -0.0965 S32: -0.0145 S33: -0.0242 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 191 A 218 REMARK 3 ORIGIN FOR THE GROUP (A): -30.2894 7.0371 19.4172 REMARK 3 T TENSOR REMARK 3 T11: 0.2854 T22: 0.1188 REMARK 3 T33: 0.1003 T12: 0.0749 REMARK 3 T13: -0.0015 T23: -0.0294 REMARK 3 L TENSOR REMARK 3 L11: 1.3324 L22: 1.7504 REMARK 3 L33: 2.2845 L12: 0.6571 REMARK 3 L13: 1.4278 L23: 1.6701 REMARK 3 S TENSOR REMARK 3 S11: 0.0445 S12: -0.2367 S13: 0.1362 REMARK 3 S21: -0.1965 S22: -0.1550 S23: -0.0207 REMARK 3 S31: -0.2295 S32: -0.3623 S33: 0.1104 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 109 REMARK 3 ORIGIN FOR THE GROUP (A): 1.5562 1.3384 -11.5146 REMARK 3 T TENSOR REMARK 3 T11: 0.1848 T22: 0.0418 REMARK 3 T33: 0.0942 T12: 0.0010 REMARK 3 T13: 0.0006 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.2565 L22: 1.0009 REMARK 3 L33: 0.4329 L12: 0.4001 REMARK 3 L13: -0.1968 L23: -0.2629 REMARK 3 S TENSOR REMARK 3 S11: 0.0216 S12: -0.0112 S13: 0.0026 REMARK 3 S21: 0.0172 S22: -0.0275 S23: 0.0025 REMARK 3 S31: -0.0553 S32: 0.0221 S33: 0.0060 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 110 B 156 REMARK 3 ORIGIN FOR THE GROUP (A): -12.5410 -1.5324 20.9406 REMARK 3 T TENSOR REMARK 3 T11: 0.2401 T22: 0.0555 REMARK 3 T33: 0.0846 T12: -0.0103 REMARK 3 T13: 0.0015 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 1.3286 L22: 0.6745 REMARK 3 L33: 0.8757 L12: 0.8249 REMARK 3 L13: -0.7853 L23: -0.4314 REMARK 3 S TENSOR REMARK 3 S11: 0.0298 S12: -0.1457 S13: 0.0512 REMARK 3 S21: -0.0094 S22: -0.0204 S23: 0.0123 REMARK 3 S31: 0.0541 S32: 0.0977 S33: -0.0094 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 157 B 162 REMARK 3 ORIGIN FOR THE GROUP (A): -10.6676 -16.5862 25.2192 REMARK 3 T TENSOR REMARK 3 T11: 0.3654 T22: 0.0992 REMARK 3 T33: 0.3158 T12: 0.0988 REMARK 3 T13: 0.1548 T23: 0.0650 REMARK 3 L TENSOR REMARK 3 L11: 12.8523 L22: 2.4856 REMARK 3 L33: 0.9937 L12: 4.9355 REMARK 3 L13: 3.0160 L23: 0.7546 REMARK 3 S TENSOR REMARK 3 S11: -0.0506 S12: 0.4196 S13: -0.7752 REMARK 3 S21: -0.3258 S22: 0.1013 S23: -0.4039 REMARK 3 S31: 0.2110 S32: 0.1642 S33: -0.0507 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 163 B 217 REMARK 3 ORIGIN FOR THE GROUP (A): -12.3283 -4.6438 22.7718 REMARK 3 T TENSOR REMARK 3 T11: 0.2222 T22: 0.0638 REMARK 3 T33: 0.0886 T12: -0.0040 REMARK 3 T13: -0.0065 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 1.0846 L22: 0.6766 REMARK 3 L33: 0.9504 L12: 0.8262 REMARK 3 L13: -0.8479 L23: -0.5776 REMARK 3 S TENSOR REMARK 3 S11: 0.0577 S12: -0.1310 S13: -0.0348 REMARK 3 S21: 0.0173 S22: -0.0681 S23: -0.0057 REMARK 3 S31: 0.0499 S32: 0.1300 S33: 0.0104 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2W60 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1290038337. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.043 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64156 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 68.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2VL5 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 M AMMONIUM NITRATE, 25% PEG 3350, REMARK 280 PH 8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.40000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.30000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.30000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.40000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 218 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 217 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2199 O HOH B 2200 2.14 REMARK 500 O HOH B 2089 O HOH B 2092 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR A 158 CB THR A 158 CG2 -0.199 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 105 70.48 -113.43 REMARK 500 ASN A 138 -160.65 -122.98 REMARK 500 SER A 177 -123.60 -146.83 REMARK 500 SER A 177 -123.23 -147.12 REMARK 500 VAL B 56 -47.41 73.59 REMARK 500 ARG B 160 158.37 175.52 REMARK 500 ARG B 160 158.16 175.52 REMARK 500 GLN B 161 -136.19 -153.78 REMARK 500 GLN B 161 -135.96 -153.70 REMARK 500 ASN B 162 -110.51 -170.42 REMARK 500 ASN B 162 -110.51 -170.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2101 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH B2011 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH B2012 DISTANCE = 7.12 ANGSTROMS REMARK 525 HOH B2054 DISTANCE = 6.15 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A1219 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2W65 RELATED DB: PDB REMARK 900 ANTI CITRULLINATED COLLAGEN TYPE 2 ANTIBODY AAC4 IN COMPLEX WITH A REMARK 900 CITRULLINATED PEPTIDE DBREF 2W60 A 1 218 PDB 2W60 2W60 1 218 DBREF 2W60 B 1 217 PDB 2W60 2W60 1 217 SEQRES 1 A 218 GLN ILE GLN LEU VAL GLN SER GLY PRO GLU LEU LYS LYS SEQRES 2 A 218 PRO GLY GLU THR VAL LYS ILE SER CYS LYS ALA SER GLY SEQRES 3 A 218 TYR THR PHE THR ASP TYR SER ILE HIS TRP VAL LYS GLN SEQRES 4 A 218 ALA PRO GLY LYS GLY LEU LYS TRP MET GLY TRP ILE ASN SEQRES 5 A 218 THR GLU THR GLY GLU PRO THR TYR THR ASP ASP PHE LYS SEQRES 6 A 218 GLY ARG PHE ALA PHE SER LEU GLU SER SER ALA SER THR SEQRES 7 A 218 ALA PHE LEU GLN ILE ASN ASN LEU LYS ASN GLU ASP THR SEQRES 8 A 218 ALA THR TYR PHE CYS ALA ARG ALA THR THR ALA THR GLU SEQRES 9 A 218 LEU ALA TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SEQRES 10 A 218 ALA ALA LYS THR THR PRO PRO SER VAL TYR PRO LEU ALA SEQRES 11 A 218 PRO GLY SER ALA ALA GLN THR ASN SER MET VAL THR LEU SEQRES 12 A 218 GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR SEQRES 13 A 218 VAL THR TRP ASN SER GLY SER LEU SER SER GLY VAL HIS SEQRES 14 A 218 THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SEQRES 15 A 218 SER SER SER VAL THR VAL PRO SER SER THR TRP PRO SER SEQRES 16 A 218 GLU THR VAL THR CYS ASN VAL ALA HIS PRO ALA SER SER SEQRES 17 A 218 THR LYS VAL ASP LYS LYS ILE VAL PRO ARG SEQRES 1 B 217 ASP VAL VAL MET THR GLN THR PRO LEU THR LEU SER VAL SEQRES 2 B 217 THR ILE GLY GLN PRO ALA SER ILE SER CYS LYS SER SER SEQRES 3 B 217 GLN SER LEU LEU ASP SER ASP GLY LYS THR TYR LEU ASN SEQRES 4 B 217 TRP LEU LEU GLN ARG PRO GLY GLN SER PRO LYS ARG LEU SEQRES 5 B 217 ILE TYR LEU VAL SER LYS LEU ASP SER GLY VAL PRO ASP SEQRES 6 B 217 ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 B 217 LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY VAL TYR SEQRES 8 B 217 TYR CYS TRP GLN GLY THR HIS PHE PRO LEU THR PHE GLY SEQRES 9 B 217 ALA GLY THR LYS LEU GLU LEU LYS ARG ALA ASP ALA ALA SEQRES 10 B 217 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 B 217 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 B 217 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 B 217 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 B 217 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 B 217 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 B 217 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 B 217 PRO ILE VAL LYS SER PHE ASN ARG ASN HET NO3 A1219 4 HETNAM NO3 NITRATE ION FORMUL 3 NO3 N O3 1- FORMUL 4 HOH *522(H2 O) HELIX 1 1 THR A 28 TYR A 32 5 5 HELIX 2 2 ASP A 62 LYS A 65 5 4 HELIX 3 3 SER A 74 ALA A 76 5 3 HELIX 4 4 LYS A 87 THR A 91 5 5 HELIX 5 5 SER A 161 SER A 163 5 3 HELIX 6 6 PRO A 205 SER A 208 5 4 HELIX 7 7 GLU B 84 LEU B 88 5 5 HELIX 8 8 SER B 126 SER B 132 1 7 HELIX 9 9 LYS B 188 GLU B 192 1 5 SHEET 1 AA 4 GLN A 3 GLN A 6 0 SHEET 2 AA 4 VAL A 18 SER A 25 -1 O LYS A 23 N VAL A 5 SHEET 3 AA 4 THR A 78 ILE A 83 -1 O ALA A 79 N CYS A 22 SHEET 4 AA 4 PHE A 68 GLU A 73 -1 O ALA A 69 N GLN A 82 SHEET 1 AB 6 GLU A 10 LYS A 12 0 SHEET 2 AB 6 THR A 112 VAL A 116 1 O LEU A 113 N GLU A 10 SHEET 3 AB 6 ALA A 92 ARG A 98 -1 O ALA A 92 N VAL A 114 SHEET 4 AB 6 ILE A 34 GLN A 39 -1 O HIS A 35 N ALA A 97 SHEET 5 AB 6 LYS A 46 ILE A 51 -1 O LYS A 46 N LYS A 38 SHEET 6 AB 6 PRO A 58 TYR A 60 -1 O THR A 59 N TRP A 50 SHEET 1 AC 4 GLU A 10 LYS A 12 0 SHEET 2 AC 4 THR A 112 VAL A 116 1 O LEU A 113 N GLU A 10 SHEET 3 AC 4 ALA A 92 ARG A 98 -1 O ALA A 92 N VAL A 114 SHEET 4 AC 4 TYR A 107 TRP A 108 -1 O TYR A 107 N ARG A 98 SHEET 1 AD 4 SER A 125 LEU A 129 0 SHEET 2 AD 4 MET A 140 TYR A 150 -1 O GLY A 144 N LEU A 129 SHEET 3 AD 4 TYR A 180 PRO A 189 -1 O TYR A 180 N TYR A 150 SHEET 4 AD 4 VAL A 168 THR A 170 -1 O HIS A 169 N SER A 185 SHEET 1 AE 4 SER A 125 LEU A 129 0 SHEET 2 AE 4 MET A 140 TYR A 150 -1 O GLY A 144 N LEU A 129 SHEET 3 AE 4 TYR A 180 PRO A 189 -1 O TYR A 180 N TYR A 150 SHEET 4 AE 4 VAL A 174 LEU A 175 -1 O VAL A 174 N THR A 181 SHEET 1 AF 3 THR A 156 TRP A 159 0 SHEET 2 AF 3 THR A 199 HIS A 204 -1 O ASN A 201 N THR A 158 SHEET 3 AF 3 THR A 209 LYS A 214 -1 O THR A 209 N HIS A 204 SHEET 1 BA 4 MET B 4 THR B 7 0 SHEET 2 BA 4 ALA B 19 SER B 25 -1 O SER B 22 N THR B 7 SHEET 3 BA 4 ASP B 75 ILE B 80 -1 O PHE B 76 N CYS B 23 SHEET 4 BA 4 PHE B 67 SER B 72 -1 O THR B 68 N LYS B 79 SHEET 1 BB 6 THR B 10 VAL B 13 0 SHEET 2 BB 6 THR B 107 LEU B 111 1 O LYS B 108 N LEU B 11 SHEET 3 BB 6 GLY B 89 GLN B 95 -1 O GLY B 89 N LEU B 109 SHEET 4 BB 6 LEU B 38 GLN B 43 -1 O ASN B 39 N TRP B 94 SHEET 5 BB 6 LYS B 50 TYR B 54 -1 O LYS B 50 N LEU B 42 SHEET 6 BB 6 LYS B 58 LEU B 59 -1 O LYS B 58 N TYR B 54 SHEET 1 BC 4 THR B 10 VAL B 13 0 SHEET 2 BC 4 THR B 107 LEU B 111 1 O LYS B 108 N LEU B 11 SHEET 3 BC 4 GLY B 89 GLN B 95 -1 O GLY B 89 N LEU B 109 SHEET 4 BC 4 THR B 102 PHE B 103 -1 O THR B 102 N GLN B 95 SHEET 1 BD 4 THR B 119 PHE B 123 0 SHEET 2 BD 4 GLY B 134 PHE B 144 -1 O VAL B 138 N PHE B 123 SHEET 3 BD 4 TYR B 178 THR B 187 -1 O TYR B 178 N PHE B 144 SHEET 4 BD 4 GLY B 163 TRP B 168 -1 O GLY B 163 N THR B 185 SHEET 1 BE 4 SER B 158 GLU B 159 0 SHEET 2 BE 4 ASN B 150 ILE B 155 -1 O ILE B 155 N SER B 158 SHEET 3 BE 4 SER B 196 THR B 202 -1 O THR B 198 N LYS B 154 SHEET 4 BE 4 ILE B 210 ASN B 215 -1 O ILE B 210 N ALA B 201 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.04 SSBOND 2 CYS A 145 CYS A 200 1555 1555 2.01 SSBOND 3 CYS B 23 CYS B 93 1555 1555 2.04 SSBOND 4 CYS B 139 CYS B 199 1555 1555 2.01 CISPEP 1 PHE A 151 PRO A 152 0 -9.59 CISPEP 2 GLU A 153 PRO A 154 0 6.97 CISPEP 3 TRP A 193 PRO A 194 0 8.60 CISPEP 4 THR B 7 PRO B 8 0 -2.34 CISPEP 5 PHE B 99 PRO B 100 0 0.68 CISPEP 6 TYR B 145 PRO B 146 0 4.90 SITE 1 AC1 5 LYS A 38 LYS A 46 ASP A 63 PHE A 64 SITE 2 AC1 5 LYS A 120 CRYST1 44.800 70.000 136.600 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022321 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014286 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007321 0.00000