HEADER LIGASE 18-DEC-08 2W6Q TITLE CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM E. COLI IN COMPLEX WITH TITLE 2 THE TRIAZINE-2,4-DIAMINE FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIOTIN CARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ACETYL-COA CARBOXYLASE SUBUNIT A, ACC; COMPND 5 EC: 6.3.4.14, 6.4.1.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIGASE, ATP-BINDING, FATTY ACID BIOSYNTHESIS, NUCLEOTIDE-BINDING, KEYWDS 2 LIPID SYNTHESIS, ATP-GRASP DOMAIN, FRAGMENT SCREENING EXPDTA X-RAY DIFFRACTION AUTHOR I.MOCHALKIN,J.R.MILLER REVDAT 3 13-DEC-23 2W6Q 1 REMARK REVDAT 2 27-APR-11 2W6Q 1 KEYWDS JRNL REMARK HETNAM REVDAT 2 2 1 FORMUL REVDAT 1 19-MAY-09 2W6Q 0 JRNL AUTH I.MOCHALKIN,J.R.MILLER,L.S.NARASIMHAN,V.THANABAL,P.ERDMAN, JRNL AUTH 2 P.COX,J.V.PRASAD,S.LIGHTLE,M.HUBAND,K.STOVER JRNL TITL DISCOVERY OF ANTIBACTERIAL BIOTIN CARBOXYLASE INHIBITORS BY JRNL TITL 2 VIRTUAL SCREENING AND FRAGMENT-BASED APPROACHES. JRNL REF ACS CHEM.BIOL. V. 4 473 2009 JRNL REFN ISSN 1554-8929 JRNL PMID 19413326 JRNL DOI 10.1021/CB9000102 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 62953 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3364 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4408 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 253 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6860 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 699 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.48000 REMARK 3 B33 (A**2) : -0.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.188 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.165 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.789 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7060 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9520 ; 1.057 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 889 ; 5.148 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 319 ;35.379 ;23.668 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1247 ;13.666 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 59 ;18.413 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1038 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5363 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3353 ; 0.178 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4873 ; 0.294 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 609 ; 0.120 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 56 ; 0.198 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.132 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4575 ; 0.475 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7093 ; 0.819 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2802 ; 1.308 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2427 ; 2.202 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2W6Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1290038400. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66405 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 3.990 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.2200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2J9G REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M KCL AND 2-8% PEG-800 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.99800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.02250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.78650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.02250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.99800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.78650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 448 REMARK 465 LYS A 449 REMARK 465 GLN B 447 REMARK 465 GLU B 448 REMARK 465 LYS B 449 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 447 CA C O CB CG CD OE1 REMARK 470 GLN A 447 NE2 REMARK 470 LEU B 446 CA C O CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 59 -87.10 -126.97 REMARK 500 PHE A 84 -111.78 38.92 REMARK 500 LEU A 225 61.57 -118.74 REMARK 500 ALA A 226 -155.74 56.02 REMARK 500 ASN B 9 -169.49 -170.65 REMARK 500 SER B 59 -85.56 -135.50 REMARK 500 PHE B 84 -115.01 43.78 REMARK 500 SER B 194 14.68 57.55 REMARK 500 LEU B 225 64.22 -119.59 REMARK 500 ALA B 226 -155.11 55.25 REMARK 500 THR B 291 57.97 -92.08 REMARK 500 TYR B 381 -167.86 -123.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 6-(2-PHENOXY-ETHOXY)-[1,3,5]TRIAZINE-2,4-DIAMINE (OA5): REMARK 600 INITIAL FRAGMENT SCREENING HIT REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OA5 A 1447 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OA5 B 1446 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1448 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1447 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2J9G RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM E. COLI IN COMPLEX REMARK 900 WITH AMPPNP AND ADP REMARK 900 RELATED ID: 2VR1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM E. COLI IN COMPLEX REMARK 900 WITH ATP ANALOG, ADPCF2P. REMARK 900 RELATED ID: 2V5A RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM E.COLI IN COMPLEX WITH REMARK 900 POTENT INHIBITOR 3 REMARK 900 RELATED ID: 1K69 RELATED DB: PDB REMARK 900 MODEL INTERACTION BETWEEN BCCP AND ATP-BOUND CARBOXYLASESUBUNIT OF REMARK 900 ACETYL COA CARBOXYLASE REMARK 900 RELATED ID: 2GPW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE BIOTIN CARBOXYLASE SUBUNIT, F363AMUTANT, REMARK 900 OF ACETYL-COA CARBOXYLASE FROM ESCHERICHIA COLI. REMARK 900 RELATED ID: 2W6N RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM E. COLI IN COMPLEX REMARK 900 WITH AMINO-OXAZOLE FRAGMENT SERIES REMARK 900 RELATED ID: 1BNC RELATED DB: PDB REMARK 900 MOL_ID: 1; MOLECULE: BIOTIN CARBOXYLASE; CHAIN : A, B; EC: 6.3.4.14 REMARK 900 RELATED ID: 2W71 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM E. COLI IN COMPLEX REMARK 900 WITH THE IMIDAZOLE- PYRIMIDINE INHIBITOR REMARK 900 RELATED ID: 2V59 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM E.COLI IN COMPLEX WITH REMARK 900 POTENT INHIBITOR 2 REMARK 900 RELATED ID: 2W6P RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM E. COLI IN COMPLEX REMARK 900 WITH 5-METHYL-6- PHENYL-QUINAZOLINE-2,4-DIAMINE REMARK 900 RELATED ID: 2W7C RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM E. COLI IN COMPLEX REMARK 900 WITH THE 2-AMINO- PYRIMIDINE FRAGMENT REMARK 900 RELATED ID: 2V58 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM E.COLI IN COMPLEX WITH REMARK 900 POTENT INHIBITOR 1 REMARK 900 RELATED ID: 2W6O RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM E. COLI IN COMPLEX REMARK 900 WITH 4-AMINO-7,7- DIMETHYL-7,8-DIHYDRO-QUINAZOLINONE FRAGMENT REMARK 900 RELATED ID: 2W6Z RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM E. COLI IN COMPLEX REMARK 900 WITH THE 3-(3-METHYL -BUT-2-ENYL)-3H-PURIN-6-YLAMINE FRAGMENT REMARK 900 RELATED ID: 1DV1 RELATED DB: PDB REMARK 900 STRUCTURE OF BIOTIN CARBOXYLASE (APO) REMARK 900 RELATED ID: 2W6M RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM E. COLI IN COMPLEX REMARK 900 WITH AMINO-OXAZOLE FRAGMENT SERIES REMARK 900 RELATED ID: 2GPS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE BIOTIN CARBOXYLASE SUBUNIT, E23RMUTANT, OF REMARK 900 ACETYL-COA CARBOXYLASE FROM ESCHERICHIA COLI. REMARK 900 RELATED ID: 2W70 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM E. COLI IN COMPLEX REMARK 900 WITH THE AMINO-THIAZOLE -PYRIMIDINE FRAGMENT REMARK 900 RELATED ID: 1DV2 RELATED DB: PDB REMARK 900 THE STRUCTURE OF BIOTIN CARBOXYLASE, MUTANT E288K, COMPLEXED WITH REMARK 900 ATP DBREF 2W6Q A 1 449 UNP P24182 ACCC_ECOLI 1 449 DBREF 2W6Q B 1 449 UNP P24182 ACCC_ECOLI 1 449 SEQRES 1 A 449 MET LEU ASP LYS ILE VAL ILE ALA ASN ARG GLY GLU ILE SEQRES 2 A 449 ALA LEU ARG ILE LEU ARG ALA CYS LYS GLU LEU GLY ILE SEQRES 3 A 449 LYS THR VAL ALA VAL HIS SER SER ALA ASP ARG ASP LEU SEQRES 4 A 449 LYS HIS VAL LEU LEU ALA ASP GLU THR VAL CYS ILE GLY SEQRES 5 A 449 PRO ALA PRO SER VAL LYS SER TYR LEU ASN ILE PRO ALA SEQRES 6 A 449 ILE ILE SER ALA ALA GLU ILE THR GLY ALA VAL ALA ILE SEQRES 7 A 449 HIS PRO GLY TYR GLY PHE LEU SER GLU ASN ALA ASN PHE SEQRES 8 A 449 ALA GLU GLN VAL GLU ARG SER GLY PHE ILE PHE ILE GLY SEQRES 9 A 449 PRO LYS ALA GLU THR ILE ARG LEU MET GLY ASP LYS VAL SEQRES 10 A 449 SER ALA ILE ALA ALA MET LYS LYS ALA GLY VAL PRO CYS SEQRES 11 A 449 VAL PRO GLY SER ASP GLY PRO LEU GLY ASP ASP MET ASP SEQRES 12 A 449 LYS ASN ARG ALA ILE ALA LYS ARG ILE GLY TYR PRO VAL SEQRES 13 A 449 ILE ILE LYS ALA SER GLY GLY GLY GLY GLY ARG GLY MET SEQRES 14 A 449 ARG VAL VAL ARG GLY ASP ALA GLU LEU ALA GLN SER ILE SEQRES 15 A 449 SER MET THR ARG ALA GLU ALA LYS ALA ALA PHE SER ASN SEQRES 16 A 449 ASP MET VAL TYR MET GLU LYS TYR LEU GLU ASN PRO ARG SEQRES 17 A 449 HIS VAL GLU ILE GLN VAL LEU ALA ASP GLY GLN GLY ASN SEQRES 18 A 449 ALA ILE TYR LEU ALA GLU ARG ASP CYS SER MET GLN ARG SEQRES 19 A 449 ARG HIS GLN LYS VAL VAL GLU GLU ALA PRO ALA PRO GLY SEQRES 20 A 449 ILE THR PRO GLU LEU ARG ARG TYR ILE GLY GLU ARG CYS SEQRES 21 A 449 ALA LYS ALA CYS VAL ASP ILE GLY TYR ARG GLY ALA GLY SEQRES 22 A 449 THR PHE GLU PHE LEU PHE GLU ASN GLY GLU PHE TYR PHE SEQRES 23 A 449 ILE GLU MET ASN THR ARG ILE GLN VAL GLU HIS PRO VAL SEQRES 24 A 449 THR GLU MET ILE THR GLY VAL ASP LEU ILE LYS GLU GLN SEQRES 25 A 449 LEU ARG ILE ALA ALA GLY GLN PRO LEU SER ILE LYS GLN SEQRES 26 A 449 GLU GLU VAL HIS VAL ARG GLY HIS ALA VAL GLU CYS ARG SEQRES 27 A 449 ILE ASN ALA GLU ASP PRO ASN THR PHE LEU PRO SER PRO SEQRES 28 A 449 GLY LYS ILE THR ARG PHE HIS ALA PRO GLY GLY PHE GLY SEQRES 29 A 449 VAL ARG TRP GLU SER HIS ILE TYR ALA GLY TYR THR VAL SEQRES 30 A 449 PRO PRO TYR TYR ASP SER MET ILE GLY LYS LEU ILE CYS SEQRES 31 A 449 TYR GLY GLU ASN ARG ASP VAL ALA ILE ALA ARG MET LYS SEQRES 32 A 449 ASN ALA LEU GLN GLU LEU ILE ILE ASP GLY ILE LYS THR SEQRES 33 A 449 ASN VAL ASP LEU GLN ILE ARG ILE MET ASN ASP GLU ASN SEQRES 34 A 449 PHE GLN HIS GLY GLY THR ASN ILE HIS TYR LEU GLU LYS SEQRES 35 A 449 LYS LEU GLY LEU GLN GLU LYS SEQRES 1 B 449 MET LEU ASP LYS ILE VAL ILE ALA ASN ARG GLY GLU ILE SEQRES 2 B 449 ALA LEU ARG ILE LEU ARG ALA CYS LYS GLU LEU GLY ILE SEQRES 3 B 449 LYS THR VAL ALA VAL HIS SER SER ALA ASP ARG ASP LEU SEQRES 4 B 449 LYS HIS VAL LEU LEU ALA ASP GLU THR VAL CYS ILE GLY SEQRES 5 B 449 PRO ALA PRO SER VAL LYS SER TYR LEU ASN ILE PRO ALA SEQRES 6 B 449 ILE ILE SER ALA ALA GLU ILE THR GLY ALA VAL ALA ILE SEQRES 7 B 449 HIS PRO GLY TYR GLY PHE LEU SER GLU ASN ALA ASN PHE SEQRES 8 B 449 ALA GLU GLN VAL GLU ARG SER GLY PHE ILE PHE ILE GLY SEQRES 9 B 449 PRO LYS ALA GLU THR ILE ARG LEU MET GLY ASP LYS VAL SEQRES 10 B 449 SER ALA ILE ALA ALA MET LYS LYS ALA GLY VAL PRO CYS SEQRES 11 B 449 VAL PRO GLY SER ASP GLY PRO LEU GLY ASP ASP MET ASP SEQRES 12 B 449 LYS ASN ARG ALA ILE ALA LYS ARG ILE GLY TYR PRO VAL SEQRES 13 B 449 ILE ILE LYS ALA SER GLY GLY GLY GLY GLY ARG GLY MET SEQRES 14 B 449 ARG VAL VAL ARG GLY ASP ALA GLU LEU ALA GLN SER ILE SEQRES 15 B 449 SER MET THR ARG ALA GLU ALA LYS ALA ALA PHE SER ASN SEQRES 16 B 449 ASP MET VAL TYR MET GLU LYS TYR LEU GLU ASN PRO ARG SEQRES 17 B 449 HIS VAL GLU ILE GLN VAL LEU ALA ASP GLY GLN GLY ASN SEQRES 18 B 449 ALA ILE TYR LEU ALA GLU ARG ASP CYS SER MET GLN ARG SEQRES 19 B 449 ARG HIS GLN LYS VAL VAL GLU GLU ALA PRO ALA PRO GLY SEQRES 20 B 449 ILE THR PRO GLU LEU ARG ARG TYR ILE GLY GLU ARG CYS SEQRES 21 B 449 ALA LYS ALA CYS VAL ASP ILE GLY TYR ARG GLY ALA GLY SEQRES 22 B 449 THR PHE GLU PHE LEU PHE GLU ASN GLY GLU PHE TYR PHE SEQRES 23 B 449 ILE GLU MET ASN THR ARG ILE GLN VAL GLU HIS PRO VAL SEQRES 24 B 449 THR GLU MET ILE THR GLY VAL ASP LEU ILE LYS GLU GLN SEQRES 25 B 449 LEU ARG ILE ALA ALA GLY GLN PRO LEU SER ILE LYS GLN SEQRES 26 B 449 GLU GLU VAL HIS VAL ARG GLY HIS ALA VAL GLU CYS ARG SEQRES 27 B 449 ILE ASN ALA GLU ASP PRO ASN THR PHE LEU PRO SER PRO SEQRES 28 B 449 GLY LYS ILE THR ARG PHE HIS ALA PRO GLY GLY PHE GLY SEQRES 29 B 449 VAL ARG TRP GLU SER HIS ILE TYR ALA GLY TYR THR VAL SEQRES 30 B 449 PRO PRO TYR TYR ASP SER MET ILE GLY LYS LEU ILE CYS SEQRES 31 B 449 TYR GLY GLU ASN ARG ASP VAL ALA ILE ALA ARG MET LYS SEQRES 32 B 449 ASN ALA LEU GLN GLU LEU ILE ILE ASP GLY ILE LYS THR SEQRES 33 B 449 ASN VAL ASP LEU GLN ILE ARG ILE MET ASN ASP GLU ASN SEQRES 34 B 449 PHE GLN HIS GLY GLY THR ASN ILE HIS TYR LEU GLU LYS SEQRES 35 B 449 LYS LEU GLY LEU GLN GLU LYS HET OA5 A1447 18 HET CL A1448 1 HET OA5 B1446 18 HET CL B1447 1 HETNAM OA5 6-(2-PHENOXYETHOXY)-1,3,5-TRIAZINE-2,4-DIAMINE HETNAM CL CHLORIDE ION FORMUL 3 OA5 2(C11 H13 N5 O2) FORMUL 4 CL 2(CL 1-) FORMUL 7 HOH *699(H2 O) HELIX 1 1 ARG A 10 LEU A 24 1 15 HELIX 2 2 LEU A 39 ALA A 45 1 7 HELIX 3 3 PRO A 55 SER A 59 5 5 HELIX 4 4 ASN A 62 GLY A 74 1 13 HELIX 5 5 ASN A 88 SER A 98 1 11 HELIX 6 6 LYS A 106 ASP A 115 1 10 HELIX 7 7 ASP A 115 GLY A 127 1 13 HELIX 8 8 ASP A 141 GLY A 153 1 13 HELIX 9 9 GLY A 174 SER A 194 1 21 HELIX 10 10 THR A 249 GLY A 268 1 20 HELIX 11 11 GLU A 296 GLY A 305 1 10 HELIX 12 12 ASP A 307 GLY A 318 1 12 HELIX 13 13 LYS A 324 VAL A 328 5 5 HELIX 14 14 ASN A 394 LEU A 409 1 16 HELIX 15 15 ASN A 417 ASN A 426 1 10 HELIX 16 16 ASP A 427 GLY A 433 1 7 HELIX 17 17 HIS A 438 LEU A 446 1 9 HELIX 18 18 ARG B 10 GLY B 25 1 16 HELIX 19 19 ALA B 35 ARG B 37 5 3 HELIX 20 20 LEU B 39 ALA B 45 1 7 HELIX 21 21 PRO B 55 SER B 59 5 5 HELIX 22 22 ASN B 62 THR B 73 1 12 HELIX 23 23 ASN B 88 SER B 98 1 11 HELIX 24 24 LYS B 106 ASP B 115 1 10 HELIX 25 25 ASP B 115 GLY B 127 1 13 HELIX 26 26 ASP B 141 GLY B 153 1 13 HELIX 27 27 GLY B 174 PHE B 193 1 20 HELIX 28 28 THR B 249 GLY B 268 1 20 HELIX 29 29 GLU B 296 GLY B 305 1 10 HELIX 30 30 ASP B 307 ALA B 317 1 11 HELIX 31 31 LYS B 324 VAL B 328 5 5 HELIX 32 32 ASN B 394 LEU B 409 1 16 HELIX 33 33 ASN B 417 ASP B 427 1 11 HELIX 34 34 ASP B 427 GLY B 433 1 7 HELIX 35 35 HIS B 438 GLY B 445 1 8 SHEET 1 AA 5 GLU A 47 GLY A 52 0 SHEET 2 AA 5 LYS A 27 SER A 33 1 O THR A 28 N GLU A 47 SHEET 3 AA 5 LYS A 4 ILE A 7 1 O ILE A 5 N VAL A 29 SHEET 4 AA 5 ALA A 77 HIS A 79 1 O ALA A 77 N VAL A 6 SHEET 5 AA 5 ILE A 101 PHE A 102 1 O ILE A 101 N ILE A 78 SHEET 1 AB 3 ARG A 167 VAL A 172 0 SHEET 2 AB 3 VAL A 156 GLY A 164 -1 O VAL A 156 N VAL A 172 SHEET 3 AB 3 VAL A 198 LYS A 202 -1 O TYR A 199 N LYS A 159 SHEET 1 AC 8 GLU A 283 ASN A 290 0 SHEET 2 AC 8 GLY A 271 GLU A 280 -1 O THR A 274 N ASN A 290 SHEET 3 AC 8 ARG A 208 ALA A 216 -1 O ARG A 208 N PHE A 279 SHEET 4 AC 8 ALA A 222 ARG A 234 -1 O ILE A 223 N LEU A 215 SHEET 5 AC 8 GLN A 237 ALA A 243 -1 O GLN A 237 N ARG A 234 SHEET 6 AC 8 HIS A 333 ASN A 340 -1 O ALA A 334 N ALA A 243 SHEET 7 AC 8 MET A 384 GLY A 392 -1 N ILE A 385 O ILE A 339 SHEET 8 AC 8 VAL A 365 SER A 369 -1 O ARG A 366 N ILE A 389 SHEET 1 AD 2 GLY A 352 LYS A 353 0 SHEET 2 AD 2 THR A 376 VAL A 377 -1 O VAL A 377 N GLY A 352 SHEET 1 AE 2 ARG A 356 HIS A 358 0 SHEET 2 AE 2 ILE A 410 ASP A 412 -1 O ILE A 410 N HIS A 358 SHEET 1 BA 5 GLU B 47 GLY B 52 0 SHEET 2 BA 5 LYS B 27 SER B 33 1 O THR B 28 N GLU B 47 SHEET 3 BA 5 LYS B 4 ILE B 7 1 O ILE B 5 N VAL B 29 SHEET 4 BA 5 ALA B 77 HIS B 79 1 O ALA B 77 N VAL B 6 SHEET 5 BA 5 ILE B 101 PHE B 102 1 O ILE B 101 N ILE B 78 SHEET 1 BB 3 MET B 169 VAL B 172 0 SHEET 2 BB 3 VAL B 156 ALA B 160 -1 O VAL B 156 N VAL B 172 SHEET 3 BB 3 VAL B 198 LYS B 202 -1 O TYR B 199 N LYS B 159 SHEET 1 BC 8 GLU B 283 ASN B 290 0 SHEET 2 BC 8 ARG B 270 GLU B 280 -1 O THR B 274 N ASN B 290 SHEET 3 BC 8 ARG B 208 ASP B 217 -1 O ARG B 208 N PHE B 279 SHEET 4 BC 8 ALA B 222 ARG B 234 -1 O ILE B 223 N LEU B 215 SHEET 5 BC 8 GLN B 237 ALA B 243 -1 O GLN B 237 N ARG B 234 SHEET 6 BC 8 HIS B 333 ASN B 340 -1 O ALA B 334 N ALA B 243 SHEET 7 BC 8 MET B 384 GLY B 392 -1 N ILE B 385 O ILE B 339 SHEET 8 BC 8 VAL B 365 SER B 369 -1 O ARG B 366 N ILE B 389 SHEET 1 BD 2 GLY B 352 LYS B 353 0 SHEET 2 BD 2 THR B 376 VAL B 377 -1 O VAL B 377 N GLY B 352 SHEET 1 BE 2 ARG B 356 HIS B 358 0 SHEET 2 BE 2 ILE B 410 ASP B 412 -1 O ILE B 410 N HIS B 358 CISPEP 1 TYR A 154 PRO A 155 0 -1.88 CISPEP 2 ALA A 243 PRO A 244 0 -9.37 CISPEP 3 TYR B 154 PRO B 155 0 -2.88 CISPEP 4 ALA B 243 PRO B 244 0 -8.80 SITE 1 AC1 11 ILE A 157 LYS A 159 MET A 169 GLU A 201 SITE 2 AC1 11 LYS A 202 TYR A 203 LEU A 204 HIS A 236 SITE 3 AC1 11 LEU A 278 HIS A 438 HOH A2214 SITE 1 AC2 9 LYS B 159 MET B 169 GLU B 201 LYS B 202 SITE 2 AC2 9 TYR B 203 LEU B 204 HIS B 236 LEU B 278 SITE 3 AC2 9 HOH B2299 SITE 1 AC3 3 ARG A 292 GLN A 294 VAL A 295 SITE 1 AC4 4 ARG B 292 GLN B 294 VAL B 295 HOH B2176 CRYST1 83.996 105.573 122.045 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011905 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009472 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008194 0.00000