HEADER PROTEIN TRANSPORT 09-JAN-09 2W84 TITLE STRUCTURE OF PEX14 IN COMPLEX WITH PEX5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOMAL MEMBRANE PROTEIN PEX14; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, RESIDUES 16-80; COMPND 5 SYNONYM: PEROXISOMAL MEMBRANE ANCHOR PROTEIN PEX14, PEROXIN-14, PTS1 COMPND 6 RECEPTOR-DOCKING PROTEIN, PEX14; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: FIRST WXXXF/Y MOTIF, RESIDUES 108-127; COMPND 12 SYNONYM: PEROXISOME RECEPTOR 1, PEROXISOMAL C-TERMINAL TARGETING COMPND 13 SIGNAL IMPORT RECEPTOR, PTS1-BP, PEROXIN-5, PTS1 RECEPTOR, PTS1R, COMPND 14 PEX5; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETM11_MOD; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS ZELLWEGER SYNDROME, ALTERNATIVE SPLICING, PHOSPHOPROTEIN, PROTEIN KEYWDS 2 COMPLEX, DISEASE MUTATION, PEROXISOME, TPR REPEAT, POLYMORPHISM, KEYWDS 3 TRANSLOCATION, PEROXISOME BIOGENESIS DISORDER, PROTEIN TRANSPORT, KEYWDS 4 PEROXISOME IMPORT, PTS, RECEPTOR-CARGO COMPLEX, PEROXISOME TARGETING KEYWDS 5 SIGNAL EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR C.NEUFELD,F.V.FILIPP,B.SIMON,A.NEUHAUS,N.SCHUELLER,C.DAVID, AUTHOR 2 H.KOOSHAPUR,T.MADL,R.ERDMANN,W.SCHLIEBS,M.WILMANNS,M.SATTLER REVDAT 4 17-JAN-18 2W84 1 JRNL REVDAT 3 08-MAY-13 2W84 1 TITLE KEYWDS REMARK VERSN REVDAT 2 21-APR-09 2W84 1 JRNL REVDAT 1 17-FEB-09 2W84 0 JRNL AUTH C.NEUFELD,F.V.FILIPP,B.SIMON,A.NEUHAUS,N.SCHULLER,C.DAVID, JRNL AUTH 2 H.KOOSHAPUR,T.MADL,R.ERDMANN,W.SCHLIEBS,M.WILMANNS,M.SATTLER JRNL TITL STRUCTURAL BASIS FOR COMPETITIVE INTERACTIONS OF PEX14 WITH JRNL TITL 2 THE IMPORT RECEPTORS PEX5 AND PEX19. JRNL REF EMBO J. V. 28 745 2009 JRNL REFN ESSN 1460-2075 JRNL PMID 19197237 JRNL DOI 10.1038/EMBOJ.2009.7 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2W84 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1290038514. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303.0; 303.0 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 100; 100 REMARK 210 PRESSURE : 1.0 ATM; 1.0 ATM REMARK 210 SAMPLE CONTENTS : 90%WATER/10%D2O; 100%D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCA; 3D HNCACB; 3D C(CO)NH; REMARK 210 3D CBCA(CO)NH; 3D 1H-15N NOESY; REMARK 210 3D H(CCO)NH; 3D 1H-13C NOESY; 3D REMARK 210 HCCH-TOCSY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 5.0.4, TOPSPIN 1.3, REMARK 210 NMRPIPE, ARIA1.2 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCUTRE WAS DETERMINED USING EDITED-FILTERED REMARK 210 EXPERIMENTS ON 13C,15N LABELLED PEX14 - UNLABELLED PEX5 COMPLEXES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 GLY A 12 REMARK 465 ALA A 13 REMARK 465 MET A 14 REMARK 465 ALA A 15 REMARK 465 THR A 16 REMARK 465 PRO A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 PRO A 77 REMARK 465 SER A 78 REMARK 465 SER A 79 REMARK 465 LEU A 80 REMARK 465 TRP A 81 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 24 106.72 -47.55 REMARK 500 1 ALA A 74 68.05 -116.55 REMARK 500 2 SER A 39 -76.12 -52.38 REMARK 500 2 VAL B 94 -42.56 -147.35 REMARK 500 3 ASN A 21 66.97 60.72 REMARK 500 3 VAL A 22 37.26 -96.87 REMARK 500 3 PRO A 24 107.59 -58.88 REMARK 500 3 SER A 39 -78.85 -59.79 REMARK 500 3 ALA A 73 58.77 -145.31 REMARK 500 3 ALA A 74 -85.84 -106.99 REMARK 500 3 VAL B 94 -77.30 66.85 REMARK 500 4 ASN A 38 -69.36 -106.40 REMARK 500 4 SER A 39 -79.50 -172.46 REMARK 500 4 ALA A 73 42.81 -89.33 REMARK 500 4 VAL B 94 -63.01 -103.73 REMARK 500 5 ASN A 21 55.52 -98.65 REMARK 500 5 SER A 39 -81.02 -69.71 REMARK 500 6 SER A 39 -75.11 -41.17 REMARK 500 6 VAL B 94 90.81 57.04 REMARK 500 7 ASN A 38 -72.51 -122.25 REMARK 500 7 SER A 39 -81.86 -170.02 REMARK 500 8 ASN A 21 51.11 72.34 REMARK 500 8 ASN A 38 -67.92 -105.32 REMARK 500 8 SER A 39 -77.57 176.69 REMARK 500 8 THR A 72 64.77 -107.88 REMARK 500 8 VAL B 94 -70.86 -78.95 REMARK 500 9 SER A 39 -77.22 -50.86 REMARK 500 9 ALA A 73 -44.50 -132.69 REMARK 500 9 ASP A 75 55.21 -108.24 REMARK 500 10 ASN A 38 -78.32 -43.08 REMARK 500 10 SER A 39 -80.47 -163.31 REMARK 500 10 ALA A 73 -95.86 59.80 REMARK 500 10 ALA A 74 -179.43 -178.58 REMARK 500 10 VAL B 94 -77.40 -96.83 REMARK 500 10 ALA B 95 -156.06 52.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2C0M RELATED DB: PDB REMARK 900 APO FORM OF THE TPR DOMAIN OF THE PEX5P RECEPTOR REMARK 900 RELATED ID: 1FCH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PTS1 COMPLEXED TO THE TPR REGIONOF HUMAN REMARK 900 PEX5 REMARK 900 RELATED ID: 2J9Q RELATED DB: PDB REMARK 900 A NOVEL CONFORMATION FOR THE TPR DOMAIN OF PEX5P REMARK 900 RELATED ID: 2C0L RELATED DB: PDB REMARK 900 TPR DOMAIN OF HUMAN PEX5P IN COMPLEX WITH HUMAN MSCP2 REMARK 900 RELATED ID: 2W85 RELATED DB: PDB REMARK 900 STRUCTURE OF PEX14 IN COMPLEX WITH PEX19 REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 93-112 IN THIS PDB-ENTRY CORRESPOND TO RESIDUES REMARK 999 108-128 IN THE CORRESPONDING GENBANK ENTRY. DBREF 2W84 A 12 15 PDB 2W84 2W84 12 15 DBREF 2W84 A 16 80 UNP O75381 O75381 16 80 DBREF 2W84 A 81 81 PDB 2W84 2W84 81 81 DBREF 2W84 B 93 112 UNP P50542 PEX5_HUMAN 108 127 SEQRES 1 A 70 GLY ALA MET ALA THR PRO GLY SER GLU ASN VAL LEU PRO SEQRES 2 A 70 ARG GLU PRO LEU ILE ALA THR ALA VAL LYS PHE LEU GLN SEQRES 3 A 70 ASN SER ARG VAL ARG GLN SER PRO LEU ALA THR ARG ARG SEQRES 4 A 70 ALA PHE LEU LYS LYS LYS GLY LEU THR ASP GLU GLU ILE SEQRES 5 A 70 ASP MET ALA PHE GLN GLN SER GLY THR ALA ALA ASP GLU SEQRES 6 A 70 PRO SER SER LEU TRP SEQRES 1 B 20 GLY VAL ALA ASP LEU ALA LEU SER GLU ASN TRP ALA GLN SEQRES 2 B 20 GLU PHE LEU ALA ALA GLY ASP HELIX 1 1 ARG A 25 GLN A 37 1 13 HELIX 2 2 ARG A 40 SER A 44 5 5 HELIX 3 3 PRO A 45 LYS A 56 1 12 HELIX 4 4 THR A 59 GLY A 71 1 13 HELIX 5 5 GLY B 93 ALA B 110 1 18 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1