HEADER ELECTRON TRANSPORT 15-JAN-09 2W8C TITLE PLASTOCYANIN VARIANT WITH N-TERMINAL METHIONINE - CLOSED STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASTOCYANIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHORMIDIUM LAMINOSUM; SOURCE 3 ORGANISM_TAXID: 32059; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS PROTEIN INTERACTIONS, TRANSPORT, CUPREDOXIN, SELF-ASSEMBLY, METAL- KEYWDS 2 BINDING, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR P.B.CROWLEY,P.M.MATIAS,A.R.KHAN REVDAT 5 13-DEC-23 2W8C 1 REMARK LINK REVDAT 4 20-NOV-13 2W8C 1 REMARK REVDAT 3 26-OCT-11 2W8C 1 JRNL REVDAT 2 13-JUL-11 2W8C 1 VERSN REVDAT 1 27-OCT-09 2W8C 0 JRNL AUTH P.B.CROWLEY,P.M.MATIAS,A.R.KHAN,M.ROESSLE,D.I.SVERGUN JRNL TITL METAL-MEDIATED SELF-ASSEMBLY OF A BETA-SANDWICH PROTEIN. JRNL REF CHEMISTRY V. 15 12672 2009 JRNL REFN ISSN 0947-6539 JRNL PMID 19834935 JRNL DOI 10.1002/CHEM.200901410 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0063 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 19859 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1072 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1315 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3480 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.3770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1626 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 160 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 17.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.27000 REMARK 3 B22 (A**2) : 1.27000 REMARK 3 B33 (A**2) : -1.90000 REMARK 3 B12 (A**2) : 0.63000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.122 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.764 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1730 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2332 ; 1.274 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 222 ; 5.923 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 72 ;32.374 ;24.722 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 276 ;12.531 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;10.640 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 251 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1324 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 500 ; 1.755 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 815 ; 2.630 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 312 ; 2.610 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 280 ; 3.166 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 0 A 105 5 REMARK 3 1 B 0 B 105 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 420 ; 0.26 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 420 ; 0.26 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 390 ; 0.56 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 390 ; 0.56 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 420 ; 3.28 ; 5.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 420 ; 3.28 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 390 ; 4.49 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 390 ; 4.49 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 105 REMARK 3 ORIGIN FOR THE GROUP (A): 13.6615 7.0635 40.8287 REMARK 3 T TENSOR REMARK 3 T11: 0.0201 T22: 0.0371 REMARK 3 T33: 0.0266 T12: -0.0155 REMARK 3 T13: 0.0075 T23: -0.0160 REMARK 3 L TENSOR REMARK 3 L11: 1.4388 L22: 1.1536 REMARK 3 L33: 2.7728 L12: -0.6955 REMARK 3 L13: 0.4375 L23: -0.4358 REMARK 3 S TENSOR REMARK 3 S11: -0.0551 S12: -0.1278 S13: 0.0001 REMARK 3 S21: -0.0231 S22: 0.1182 S23: -0.0552 REMARK 3 S31: -0.1987 S32: 0.1758 S33: -0.0631 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 105 REMARK 3 ORIGIN FOR THE GROUP (A): 15.3164 -7.3123 11.3994 REMARK 3 T TENSOR REMARK 3 T11: 0.0218 T22: 0.0206 REMARK 3 T33: 0.0273 T12: 0.0159 REMARK 3 T13: 0.0016 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 2.0021 L22: 0.7401 REMARK 3 L33: 2.5776 L12: -0.1444 REMARK 3 L13: 0.1442 L23: 0.2147 REMARK 3 S TENSOR REMARK 3 S11: -0.0460 S12: 0.0852 S13: -0.0602 REMARK 3 S21: 0.0770 S22: 0.0824 S23: -0.0291 REMARK 3 S31: -0.1613 S32: -0.0886 S33: -0.0364 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES ARE RESIDUALS ONLY. RESIDUES VAL 32 A, MET REMARK 3 65 A, SER 78 A, ARG 93 A, MET 65 B AND ARG 93 B WERE MODELLED REMARK 3 WITH TWO ALTERNATIVE SIDE-CHAIN CONFORMATIONS REMARK 4 REMARK 4 2W8C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1290038547. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU IMAGE PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20932 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 46.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2W88 CHAIN A REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% PEG 8K, 0.1M ZINC ACETATE, 0.2 M REMARK 280 SODIUM ACETATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.87000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 16.09075 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.95000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 27.87000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 16.09075 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.95000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 27.87000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 16.09075 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.95000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 32.18150 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 131.90000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 32.18150 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 131.90000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 32.18150 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 131.90000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -205.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -148.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 27.87000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -48.27226 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 55.74000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -369.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 -27.87000 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 16.09075 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 65.95000 REMARK 350 BIOMT1 5 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 5 0.866025 -0.500000 0.000000 -32.18150 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 65.95000 REMARK 350 BIOMT1 6 -0.500000 0.866025 0.000000 27.87000 REMARK 350 BIOMT2 6 -0.866025 -0.500000 0.000000 16.09075 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 65.95000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OXT GLY A 105 O HOH A 2068 2.03 REMARK 500 OE2 GLU A 104 O HOH A 2066 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 34 -62.60 -121.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 108 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 1 OE2 REMARK 620 2 HIS A 24 ND1 103.2 REMARK 620 3 ASP A 27 OD2 123.0 90.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 106 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 39 ND1 REMARK 620 2 CYS A 89 SG 123.9 REMARK 620 3 HIS A 92 ND1 100.7 111.3 REMARK 620 4 MET A 97 SD 95.7 116.4 106.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 107 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 44 OD1 REMARK 620 2 ASP A 45 OD1 89.0 REMARK 620 3 HIS A 61 NE2 99.6 96.3 REMARK 620 4 HOH A2070 O 86.3 164.7 98.8 REMARK 620 5 HOH A2071 O 148.5 82.1 111.4 94.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 108 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 79 OD2 REMARK 620 2 MET B 0 O 89.9 REMARK 620 3 MET B 0 N 120.3 74.8 REMARK 620 4 HIS B 24 NE2 127.8 86.5 108.7 REMARK 620 5 HOH B2089 O 83.0 160.8 93.4 111.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 106 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 39 ND1 REMARK 620 2 CYS B 89 SG 126.9 REMARK 620 3 HIS B 92 ND1 100.2 110.7 REMARK 620 4 MET B 97 SD 94.9 116.7 104.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 107 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 44 OD1 REMARK 620 2 ASP B 45 OD1 86.5 REMARK 620 3 HIS B 61 NE2 104.7 93.5 REMARK 620 4 HOH B2087 O 146.5 85.1 108.1 REMARK 620 5 HOH B2088 O 97.6 160.8 103.5 81.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 108 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2W88 RELATED DB: PDB REMARK 900 PLASTOCYANIN VARIANT WITH N-TERMINAL METHIONINE - OPEN STRUCTURE REMARK 900 RELATED ID: 1BAW RELATED DB: PDB REMARK 900 PLASTOCYANIN FROM PHORMIDIUM LAMINOSUM REMARK 999 REMARK 999 SEQUENCE REMARK 999 NO SIGNAL PEPTIDE PRESENT AND N-TERMINAL MET INSERTION DBREF 2W8C A 0 0 PDB 2W8C 2W8C 0 0 DBREF 2W8C A 1 105 UNP Q51883 PLAS_PHOLA 35 139 DBREF 2W8C B 0 0 PDB 2W8C 2W8C 0 0 DBREF 2W8C B 1 105 UNP Q51883 PLAS_PHOLA 35 139 SEQRES 1 A 106 MET GLU THR PHE THR VAL LYS MET GLY ALA ASP SER GLY SEQRES 2 A 106 LEU LEU GLN PHE GLU PRO ALA ASN VAL THR VAL HIS PRO SEQRES 3 A 106 GLY ASP THR VAL LYS TRP VAL ASN ASN LYS LEU PRO PRO SEQRES 4 A 106 HIS ASN ILE LEU PHE ASP ASP LYS GLN VAL PRO GLY ALA SEQRES 5 A 106 SER LYS GLU LEU ALA ASP LYS LEU SER HIS SER GLN LEU SEQRES 6 A 106 MET PHE SER PRO GLY GLU SER TYR GLU ILE THR PHE SER SEQRES 7 A 106 SER ASP PHE PRO ALA GLY THR TYR THR TYR TYR CYS ALA SEQRES 8 A 106 PRO HIS ARG GLY ALA GLY MET VAL GLY LYS ILE THR VAL SEQRES 9 A 106 GLU GLY SEQRES 1 B 106 MET GLU THR PHE THR VAL LYS MET GLY ALA ASP SER GLY SEQRES 2 B 106 LEU LEU GLN PHE GLU PRO ALA ASN VAL THR VAL HIS PRO SEQRES 3 B 106 GLY ASP THR VAL LYS TRP VAL ASN ASN LYS LEU PRO PRO SEQRES 4 B 106 HIS ASN ILE LEU PHE ASP ASP LYS GLN VAL PRO GLY ALA SEQRES 5 B 106 SER LYS GLU LEU ALA ASP LYS LEU SER HIS SER GLN LEU SEQRES 6 B 106 MET PHE SER PRO GLY GLU SER TYR GLU ILE THR PHE SER SEQRES 7 B 106 SER ASP PHE PRO ALA GLY THR TYR THR TYR TYR CYS ALA SEQRES 8 B 106 PRO HIS ARG GLY ALA GLY MET VAL GLY LYS ILE THR VAL SEQRES 9 B 106 GLU GLY HET CU A 106 1 HET ZN A 107 1 HET ZN A 108 1 HET CU B 106 1 HET ZN B 107 1 HET ZN B 108 1 HETNAM CU COPPER (II) ION HETNAM ZN ZINC ION FORMUL 3 CU 2(CU 2+) FORMUL 4 ZN 4(ZN 2+) FORMUL 9 HOH *160(H2 O) HELIX 1 1 ASP A 45 ALA A 51 5 7 HELIX 2 2 SER A 52 SER A 60 1 9 HELIX 3 3 HIS A 92 GLY A 96 5 5 HELIX 4 4 ASP B 45 ALA B 51 5 7 HELIX 5 5 SER B 52 SER B 60 1 9 SHEET 1 AA 4 PHE A 16 GLU A 17 0 SHEET 2 AA 4 THR A 2 MET A 7 -1 O LYS A 6 N GLU A 17 SHEET 3 AA 4 ASP A 27 ASN A 33 1 O THR A 28 N PHE A 3 SHEET 4 AA 4 SER A 71 PHE A 76 -1 O TYR A 72 N TRP A 31 SHEET 1 AB 5 ASN A 20 VAL A 23 0 SHEET 2 AB 5 VAL A 98 VAL A 103 1 O LYS A 100 N VAL A 21 SHEET 3 AB 5 GLY A 83 TYR A 88 -1 O GLY A 83 N VAL A 103 SHEET 4 AB 5 HIS A 39 PHE A 43 -1 O LEU A 42 N TYR A 88 SHEET 5 AB 5 HIS A 61 MET A 65 -1 O HIS A 61 N ILE A 41 SHEET 1 BA 4 PHE B 16 GLU B 17 0 SHEET 2 BA 4 THR B 2 MET B 7 -1 O LYS B 6 N GLU B 17 SHEET 3 BA 4 THR B 28 ASN B 33 1 O THR B 28 N PHE B 3 SHEET 4 BA 4 SER B 71 THR B 75 -1 O TYR B 72 N TRP B 31 SHEET 1 BB 5 ASN B 20 VAL B 23 0 SHEET 2 BB 5 VAL B 98 VAL B 103 1 O LYS B 100 N VAL B 21 SHEET 3 BB 5 GLY B 83 TYR B 88 -1 O GLY B 83 N VAL B 103 SHEET 4 BB 5 HIS B 39 PHE B 43 -1 O LEU B 42 N TYR B 88 SHEET 5 BB 5 HIS B 61 MET B 65 -1 O HIS B 61 N ILE B 41 LINK OE2 GLU A 1 ZN ZN A 108 1555 1555 2.04 LINK ND1 HIS A 24 ZN ZN A 108 1555 1555 2.15 LINK OD2 ASP A 27 ZN ZN A 108 1555 1555 2.10 LINK ND1 HIS A 39 CU CU A 106 1555 1555 2.09 LINK OD1 ASP A 44 ZN ZN A 107 1555 1555 2.01 LINK OD1 ASP A 45 ZN ZN A 107 1555 1555 2.03 LINK NE2 HIS A 61 ZN ZN A 107 2555 1555 2.02 LINK OD2 ASP A 79 ZN ZN B 108 1555 1555 1.94 LINK SG CYS A 89 CU CU A 106 1555 1555 2.32 LINK ND1 HIS A 92 CU CU A 106 1555 1555 2.08 LINK SD MET A 97 CU CU A 106 1555 1555 2.42 LINK ZN ZN A 107 O HOH A2070 1555 1555 1.98 LINK ZN ZN A 107 O HOH A2071 1555 1555 1.99 LINK O MET B 0 ZN ZN B 108 2555 1555 2.26 LINK N MET B 0 ZN ZN B 108 2555 1555 2.26 LINK NE2 HIS B 24 ZN ZN B 108 1555 1555 2.10 LINK ND1 HIS B 39 CU CU B 106 1555 1555 2.05 LINK OD1 ASP B 44 ZN ZN B 107 1555 1555 1.99 LINK OD1 ASP B 45 ZN ZN B 107 1555 1555 2.03 LINK NE2 HIS B 61 ZN ZN B 107 3655 1555 2.05 LINK SG CYS B 89 CU CU B 106 1555 1555 2.28 LINK ND1 HIS B 92 CU CU B 106 1555 1555 2.08 LINK SD MET B 97 CU CU B 106 1555 1555 2.46 LINK ZN ZN B 107 O HOH B2087 1555 1555 2.00 LINK ZN ZN B 107 O HOH B2088 1555 1555 2.01 LINK ZN ZN B 108 O HOH B2089 1555 1555 2.15 CISPEP 1 GLU A 17 PRO A 18 0 -1.12 CISPEP 2 PRO A 37 PRO A 38 0 3.63 CISPEP 3 GLU B 17 PRO B 18 0 -1.54 CISPEP 4 PRO B 37 PRO B 38 0 3.76 SITE 1 AC1 4 HIS A 39 CYS A 89 HIS A 92 MET A 97 SITE 1 AC2 5 ASP A 44 ASP A 45 HIS A 61 HOH A2070 SITE 2 AC2 5 HOH A2071 SITE 1 AC3 4 GLU A 1 HIS A 24 ASP A 27 HOH A2066 SITE 1 AC4 4 HIS B 39 CYS B 89 HIS B 92 MET B 97 SITE 1 AC5 5 ASP B 44 ASP B 45 HIS B 61 HOH B2087 SITE 2 AC5 5 HOH B2088 SITE 1 AC6 4 ASP A 79 MET B 0 HIS B 24 HOH B2089 CRYST1 55.740 55.740 197.850 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017940 0.010358 0.000000 0.00000 SCALE2 0.000000 0.020716 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005054 0.00000 MTRIX1 1 -0.991890 0.126940 0.006540 29.69150 1 MTRIX2 1 0.127060 0.991570 0.025240 12.11097 1 MTRIX3 1 -0.003280 0.025870 -0.999660 52.52563 1