HEADER TRANSFERASE 19-JAN-09 2W8U TITLE SPT WITH PLP, N100Y COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE PALMITOYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 2-420; COMPND 5 SYNONYM: SPT; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOMONAS PAUCIMOBILIS; SOURCE 3 ORGANISM_TAXID: 13689; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.C.C.RAMAN,K.A.JOHNSON,D.J.CAMPOPIANO,J.H.NAISMITH REVDAT 4 18-NOV-15 2W8U 1 JRNL REMARK VERSN SEQRES REVDAT 4 2 HET HETNAM HETSYN FORMUL REVDAT 4 3 MODRES LINK SITE ATOM REVDAT 4 4 ANISOU TER HETATM CONECT REVDAT 4 5 MASTER REVDAT 3 23-JUN-09 2W8U 1 JRNL REVDAT 2 05-MAY-09 2W8U 1 JRNL REMARK REVDAT 1 27-JAN-09 2W8U 0 JRNL AUTH M.C.C.RAMAN,K.A.JOHNSON,B.A.YARD,J.LOWTHER,L.G.CARTER, JRNL AUTH 2 J.H.NAISMITH,D.J.CAMPOPIANO JRNL TITL THE EXTERNAL-ALDIMINE FORM OF SERINE PALMITOYLTRANSERASE; JRNL TITL 2 STRUCTURAL, KINETIC AND SPECTROSCOPIC ANALYSIS OF THE JRNL TITL 3 WILD-TYPE ENZYME AND HSAN1 MUTANT MIMICS. JRNL REF J.BIOL.CHEM. V. 284 17328 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19376777 JRNL DOI 10.1074/JBC.M109.008680 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0070 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 54786 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2910 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3931 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1900 REMARK 3 BIN FREE R VALUE SET COUNT : 201 REMARK 3 BIN FREE R VALUE : 0.2260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3053 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 6.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.18000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : -0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.092 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.072 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.563 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3119 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2096 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4231 ; 1.210 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5123 ; 0.822 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 412 ; 5.274 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 126 ;34.545 ;23.571 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 531 ;11.494 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;14.779 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 478 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3511 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 633 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1982 ; 0.665 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3178 ; 1.091 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1137 ; 1.764 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1045 ; 2.755 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 58 REMARK 3 ORIGIN FOR THE GROUP (A): 44.2530 15.4380 2.4580 REMARK 3 T TENSOR REMARK 3 T11: 0.2586 T22: 0.2187 REMARK 3 T33: 0.1939 T12: 0.0399 REMARK 3 T13: 0.0237 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 1.0713 L22: 0.3601 REMARK 3 L33: 1.6251 L12: -0.3753 REMARK 3 L13: 0.8910 L23: -0.7604 REMARK 3 S TENSOR REMARK 3 S11: 0.0528 S12: 0.0814 S13: 0.1726 REMARK 3 S21: -0.1973 S22: -0.1078 S23: -0.0179 REMARK 3 S31: 0.4144 S32: 0.1851 S33: 0.0551 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 59 A 109 REMARK 3 ORIGIN FOR THE GROUP (A): 32.1200 30.2630 18.4040 REMARK 3 T TENSOR REMARK 3 T11: 0.0328 T22: 0.0482 REMARK 3 T33: 0.1052 T12: 0.0123 REMARK 3 T13: -0.0143 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.9095 L22: 0.5023 REMARK 3 L33: 1.8358 L12: -0.0095 REMARK 3 L13: 0.4422 L23: 0.0686 REMARK 3 S TENSOR REMARK 3 S11: -0.0305 S12: -0.0587 S13: 0.0505 REMARK 3 S21: 0.0449 S22: -0.0087 S23: -0.0599 REMARK 3 S31: -0.0266 S32: 0.0370 S33: 0.0393 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 110 A 252 REMARK 3 ORIGIN FOR THE GROUP (A): 19.3300 7.4400 18.9240 REMARK 3 T TENSOR REMARK 3 T11: 0.0497 T22: 0.0653 REMARK 3 T33: 0.0639 T12: -0.0292 REMARK 3 T13: 0.0282 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 0.5707 L22: 1.3829 REMARK 3 L33: 1.0227 L12: 0.0524 REMARK 3 L13: 0.1085 L23: -0.0713 REMARK 3 S TENSOR REMARK 3 S11: -0.0064 S12: -0.0044 S13: -0.0349 REMARK 3 S21: -0.0474 S22: -0.0351 S23: 0.0261 REMARK 3 S31: 0.1858 S32: -0.1015 S33: 0.0414 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 253 A 315 REMARK 3 RESIDUE RANGE : A 1265 A 1265 REMARK 3 ORIGIN FOR THE GROUP (A): 23.7980 18.5620 25.8220 REMARK 3 T TENSOR REMARK 3 T11: 0.0199 T22: 0.0486 REMARK 3 T33: 0.0528 T12: -0.0091 REMARK 3 T13: 0.0112 T23: -0.0253 REMARK 3 L TENSOR REMARK 3 L11: 1.0661 L22: 1.2566 REMARK 3 L33: 0.9119 L12: 0.0493 REMARK 3 L13: -0.1151 L23: -0.1450 REMARK 3 S TENSOR REMARK 3 S11: -0.0654 S12: -0.0432 S13: -0.0128 REMARK 3 S21: 0.0412 S22: -0.0121 S23: 0.0023 REMARK 3 S31: 0.0525 S32: -0.1066 S33: 0.0776 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 316 A 419 REMARK 3 ORIGIN FOR THE GROUP (A): 24.6940 20.7640 -4.5140 REMARK 3 T TENSOR REMARK 3 T11: 0.0609 T22: 0.0574 REMARK 3 T33: 0.0604 T12: 0.0198 REMARK 3 T13: -0.0101 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 1.6960 L22: 1.0242 REMARK 3 L33: 2.1733 L12: 0.1141 REMARK 3 L13: -0.3215 L23: -0.3313 REMARK 3 S TENSOR REMARK 3 S11: -0.0032 S12: 0.1173 S13: -0.1061 REMARK 3 S21: -0.1904 S22: -0.0632 S23: -0.0362 REMARK 3 S31: 0.1855 S32: 0.0047 S33: 0.0664 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES RESIDUAL ONLY. THE C-TERMINUS IS DISORDERED, REMARK 3 BUT OXT IS USED TO MODEL LAST ORDERED ATOM.LINK WITH 2W8J, 2W8T, REMARK 3 2W8W, 2W8V REMARK 4 REMARK 4 2W8U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JAN-09. REMARK 100 THE PDBE ID CODE IS EBI-38589. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54786 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.50 REMARK 200 RESOLUTION RANGE LOW (A) : 27.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.2 REMARK 200 R MERGE (I) : 0.04 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.00 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.3 REMARK 200 R MERGE FOR SHELL (I) : 0.41 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.40 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.68000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.68000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.86000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.85000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.86000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.85000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.68000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.86000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.85000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 45.68000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.86000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.85000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 8730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 71.72000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 45.68000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASN 100 TO TYR REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 GLN A 7 REMARK 465 PRO A 8 REMARK 465 HIS A 9 REMARK 465 ALA A 10 REMARK 465 LEU A 11 REMARK 465 PRO A 12 REMARK 465 ALA A 13 REMARK 465 ASP A 14 REMARK 465 ALA A 15 REMARK 465 PRO A 16 REMARK 465 ASP A 17 REMARK 465 ILE A 18 REMARK 465 ALA A 19 REMARK 465 PRO A 20 REMARK 465 GLU A 21 REMARK 465 ARG A 22 REMARK 465 LEU A 421 REMARK 465 GLU A 422 REMARK 465 HIS A 423 REMARK 465 HIS A 424 REMARK 465 HIS A 425 REMARK 465 HIS A 426 REMARK 465 HIS A 427 REMARK 465 HIS A 428 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY A 420 CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 52 O HOH A 2042 2.12 REMARK 500 OE1 GLU A 90 O HOH A 2085 1.97 REMARK 500 OG A SER A 132 O HOH A 2137 2.03 REMARK 500 O SER A 264 O HOH A 2269 2.04 REMARK 500 O HOH A 2135 O HOH A 2289 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2136 O HOH A 2136 3655 1.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 43 -80.43 -110.05 REMARK 500 SER A 56 -178.38 -170.00 REMARK 500 ASN A 74 59.73 -93.90 REMARK 500 LYS A 265 -94.26 -107.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A1265 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2W8J RELATED DB: PDB REMARK 900 SPT WITH PLP-SER REMARK 900 RELATED ID: 2W8T RELATED DB: PDB REMARK 900 SPT WITH PLP, N100C REMARK 900 RELATED ID: 2W8V RELATED DB: PDB REMARK 900 SPT WITH PLP, N100W REMARK 900 RELATED ID: 2W8W RELATED DB: PDB REMARK 900 N100Y SPT WITH PLP-SER REMARK 999 REMARK 999 SEQUENCE REMARK 999 C-TER HIS TAG NOTE ENGINEERED MUTATION AT N100Y DBREF 2W8U A 2 420 UNP Q93UV0 Q93UV0_PSEPA 2 420 DBREF 2W8U A 421 428 PDB 2W8U 2W8U 421 428 SEQADV 2W8U TYR A 100 UNP Q93UV0 ASN 100 ENGINEERED MUTATION SEQRES 1 A 427 THR GLU ALA ALA ALA GLN PRO HIS ALA LEU PRO ALA ASP SEQRES 2 A 427 ALA PRO ASP ILE ALA PRO GLU ARG ASP LEU LEU SER LYS SEQRES 3 A 427 PHE ASP GLY LEU ILE ALA GLU ARG GLN LYS LEU LEU ASP SEQRES 4 A 427 SER GLY VAL THR ASP PRO PHE ALA ILE VAL MET GLU GLN SEQRES 5 A 427 VAL LYS SER PRO THR GLU ALA VAL ILE ARG GLY LYS ASP SEQRES 6 A 427 THR ILE LEU LEU GLY THR TYR ASN TYR MET GLY MET THR SEQRES 7 A 427 PHE ASP PRO ASP VAL ILE ALA ALA GLY LYS GLU ALA LEU SEQRES 8 A 427 GLU LYS PHE GLY SER GLY THR TYR GLY SER ARG MET LEU SEQRES 9 A 427 ASN GLY THR PHE HIS ASP HIS MET GLU VAL GLU GLN ALA SEQRES 10 A 427 LEU ARG ASP PHE TYR GLY THR THR GLY ALA ILE VAL PHE SEQRES 11 A 427 SER THR GLY TYR MET ALA ASN LEU GLY ILE ILE SER THR SEQRES 12 A 427 LEU ALA GLY LYS GLY GLU TYR VAL ILE LEU ASP ALA ASP SEQRES 13 A 427 SER HIS ALA SER ILE TYR ASP GLY CYS GLN GLN GLY ASN SEQRES 14 A 427 ALA GLU ILE VAL ARG PHE ARG HIS ASN SER VAL GLU ASP SEQRES 15 A 427 LEU ASP LYS ARG LEU GLY ARG LEU PRO LYS GLU PRO ALA SEQRES 16 A 427 LYS LEU VAL VAL LEU GLU GLY VAL TYR SER MET LEU GLY SEQRES 17 A 427 ASP ILE ALA PRO LEU LYS GLU MET VAL ALA VAL ALA LYS SEQRES 18 A 427 LYS HIS GLY ALA MET VAL LEU VAL ASP GLU ALA HIS SER SEQRES 19 A 427 MET GLY PHE PHE GLY PRO ASN GLY ARG GLY VAL TYR GLU SEQRES 20 A 427 ALA GLN GLY LEU GLU GLY GLN ILE ASP PHE VAL VAL GLY SEQRES 21 A 427 THR PHE SER LYS SER VAL GLY THR VAL GLY GLY PHE VAL SEQRES 22 A 427 VAL SER ASN HIS PRO LYS PHE GLU ALA VAL ARG LEU ALA SEQRES 23 A 427 CYS ARG PRO TYR ILE PHE THR ALA SER LEU PRO PRO SER SEQRES 24 A 427 VAL VAL ALA THR ALA THR THR SER ILE ARG LYS LEU MET SEQRES 25 A 427 THR ALA HIS GLU LYS ARG GLU ARG LEU TRP SER ASN ALA SEQRES 26 A 427 ARG ALA LEU HIS GLY GLY LEU LYS ALA MET GLY PHE ARG SEQRES 27 A 427 LEU GLY THR GLU THR CYS ASP SER ALA ILE VAL ALA VAL SEQRES 28 A 427 MET LEU GLU ASP GLN GLU GLN ALA ALA MET MET TRP GLN SEQRES 29 A 427 ALA LEU LEU ASP GLY GLY LEU TYR VAL ASN MET ALA ARG SEQRES 30 A 427 PRO PRO ALA THR PRO ALA GLY THR PHE LEU LEU ARG CYS SEQRES 31 A 427 SER ILE CYS ALA GLU HIS THR PRO ALA GLN ILE GLN THR SEQRES 32 A 427 VAL LEU GLY MET PHE GLN ALA ALA GLY ARG ALA VAL GLY SEQRES 33 A 427 VAL ILE GLY LEU GLU HIS HIS HIS HIS HIS HIS HET PLP A1265 15 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 2 PLP C8 H10 N O6 P FORMUL 3 HOH *420(H2 O) HELIX 1 1 LEU A 25 LYS A 27 5 3 HELIX 2 2 PHE A 28 GLY A 42 1 15 HELIX 3 3 ASP A 81 GLY A 96 1 16 HELIX 4 4 SER A 102 GLY A 107 1 6 HELIX 5 5 HIS A 110 GLY A 124 1 15 HELIX 6 6 THR A 133 ALA A 146 1 14 HELIX 7 7 HIS A 159 GLY A 169 1 11 HELIX 8 8 SER A 180 ARG A 190 1 11 HELIX 9 9 PRO A 213 HIS A 224 1 12 HELIX 10 10 GLY A 245 GLN A 250 1 6 HELIX 11 11 LYS A 280 GLU A 282 5 3 HELIX 12 12 ALA A 283 CYS A 288 1 6 HELIX 13 13 CYS A 288 PHE A 293 1 6 HELIX 14 14 PRO A 298 MET A 313 1 16 HELIX 15 15 ALA A 315 GLY A 337 1 23 HELIX 16 16 ASP A 356 GLY A 371 1 16 HELIX 17 17 THR A 398 GLY A 417 1 20 SHEET 1 AA 4 GLN A 53 SER A 56 0 SHEET 2 AA 4 GLU A 59 ILE A 62 -1 O GLU A 59 N LYS A 55 SHEET 3 AA 4 LYS A 65 LEU A 69 -1 O LYS A 65 N ILE A 62 SHEET 4 AA 4 LEU A 372 TYR A 373 1 N TYR A 373 O ILE A 68 SHEET 1 AB 7 GLY A 127 PHE A 131 0 SHEET 2 AB 7 GLY A 272 SER A 276 -1 O GLY A 272 N PHE A 131 SHEET 3 AB 7 PHE A 258 THR A 262 -1 O VAL A 259 N VAL A 275 SHEET 4 AB 7 MET A 227 ASP A 231 1 O VAL A 228 N PHE A 258 SHEET 5 AB 7 LYS A 197 GLU A 202 1 O LYS A 197 N MET A 227 SHEET 6 AB 7 TYR A 151 ASP A 155 1 O TYR A 151 N LEU A 198 SHEET 7 AB 7 GLU A 172 PHE A 176 1 O GLU A 172 N VAL A 152 SHEET 1 AC 2 VAL A 204 TYR A 205 0 SHEET 2 AC 2 ASP A 210 ILE A 211 -1 O ASP A 210 N TYR A 205 SHEET 1 AD 4 ARG A 339 LEU A 340 0 SHEET 2 AD 4 ILE A 349 LEU A 354 -1 O MET A 353 N ARG A 339 SHEET 3 AD 4 PHE A 387 SER A 392 -1 O PHE A 387 N LEU A 354 SHEET 4 AD 4 ASN A 375 ALA A 377 -1 O ASN A 375 N ARG A 390 LINK NZ LYS A 265 C4A PLP A1265 1555 1555 1.34 CISPEP 1 PRO A 379 PRO A 380 0 4.93 SITE 1 AC1 19 THR A 133 GLY A 134 TYR A 135 ASN A 138 SITE 2 AC1 19 HIS A 159 SER A 161 GLU A 202 ASP A 231 SITE 3 AC1 19 ALA A 233 HIS A 234 THR A 262 SER A 264 SITE 4 AC1 19 LYS A 265 GLY A 271 THR A 294 ALA A 295 SITE 5 AC1 19 HOH A2271 HOH A2272 HOH A2273 CRYST1 71.720 109.700 91.360 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013943 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009116 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010946 0.00000