HEADER TRANSFERASE 19-JAN-09 2W8W TITLE N100Y SPT WITH PLP-SER COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE PALMITOYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 2-420; COMPND 5 SYNONYM: SPT; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOMONAS PAUCIMOBILIS; SOURCE 3 ORGANISM_TAXID: 13689; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.C.C.RAMAN,K.A.JOHNSON,D.J.CAMPOPIANO,J.H.NAISMITH REVDAT 5 08-MAY-24 2W8W 1 REMARK REVDAT 4 13-JUL-11 2W8W 1 VERSN REVDAT 3 23-JUN-09 2W8W 1 JRNL REMARK REVDAT 2 05-MAY-09 2W8W 1 JRNL REMARK REVDAT 1 27-JAN-09 2W8W 0 JRNL AUTH M.C.C.RAMAN,K.A.JOHNSON,B.A.YARD,J.LOWTHER,L.G.CARTER, JRNL AUTH 2 J.H.NAISMITH,D.J.CAMPOPIANO JRNL TITL THE EXTERNAL-ALDIMINE FORM OF SERINE PALMITOYLTRANSERASE; JRNL TITL 2 STRUCTURAL, KINETIC AND SPECTROSCOPIC ANALYSIS OF THE JRNL TITL 3 WILD-TYPE ENZYME AND HSAN1 MUTANT MIMICS. JRNL REF J.BIOL.CHEM. V. 284 17328 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19376777 JRNL DOI 10.1074/JBC.M109.008680 REMARK 2 REMARK 2 RESOLUTION. 2.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0070 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 18859 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1018 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.14 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.19 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1356 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3000 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 150 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.46000 REMARK 3 B22 (A**2) : -0.27000 REMARK 3 B33 (A**2) : -0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.301 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.223 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.165 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.848 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3079 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2062 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4164 ; 1.090 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5029 ; 0.799 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 396 ; 5.643 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;32.829 ;23.680 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 515 ;12.350 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;15.463 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 468 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3456 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 623 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1964 ; 0.331 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3137 ; 0.629 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1115 ; 1.026 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1027 ; 1.697 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 57 REMARK 3 ORIGIN FOR THE GROUP (A): 46.0170 15.5860 2.2420 REMARK 3 T TENSOR REMARK 3 T11: 0.3219 T22: 0.2520 REMARK 3 T33: 0.2940 T12: -0.0315 REMARK 3 T13: -0.0155 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.6826 L22: 0.3826 REMARK 3 L33: 1.2603 L12: -0.4326 REMARK 3 L13: 0.7308 L23: -0.6765 REMARK 3 S TENSOR REMARK 3 S11: 0.0084 S12: 0.1681 S13: 0.1088 REMARK 3 S21: -0.1180 S22: -0.0341 S23: 0.0118 REMARK 3 S31: 0.1703 S32: -0.0035 S33: 0.0257 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 58 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): 32.5370 30.4710 19.2840 REMARK 3 T TENSOR REMARK 3 T11: 0.0700 T22: 0.0803 REMARK 3 T33: 0.1674 T12: 0.0232 REMARK 3 T13: 0.0087 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 1.3641 L22: 1.4128 REMARK 3 L33: 1.5866 L12: 0.0980 REMARK 3 L13: 0.4039 L23: 0.3455 REMARK 3 S TENSOR REMARK 3 S11: -0.0036 S12: -0.0968 S13: 0.0872 REMARK 3 S21: 0.0998 S22: -0.0091 S23: -0.0998 REMARK 3 S31: -0.0172 S32: 0.0232 S33: 0.0126 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 115 A 280 REMARK 3 ORIGIN FOR THE GROUP (A): 20.0690 8.6670 18.8100 REMARK 3 T TENSOR REMARK 3 T11: 0.0358 T22: 0.1110 REMARK 3 T33: 0.0857 T12: -0.0122 REMARK 3 T13: 0.0039 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.9304 L22: 2.3922 REMARK 3 L33: 1.1008 L12: 0.6900 REMARK 3 L13: 0.2430 L23: -0.1791 REMARK 3 S TENSOR REMARK 3 S11: 0.0278 S12: 0.0586 S13: -0.0859 REMARK 3 S21: -0.1041 S22: -0.0026 S23: 0.1897 REMARK 3 S31: 0.1699 S32: -0.1630 S33: -0.0253 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 281 A 352 REMARK 3 ORIGIN FOR THE GROUP (A): 22.7620 21.8730 12.6760 REMARK 3 T TENSOR REMARK 3 T11: 0.0195 T22: 0.0689 REMARK 3 T33: 0.1124 T12: -0.0174 REMARK 3 T13: -0.0015 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.7285 L22: 0.9076 REMARK 3 L33: 2.5127 L12: -0.2787 REMARK 3 L13: 0.4122 L23: -0.0890 REMARK 3 S TENSOR REMARK 3 S11: 0.0077 S12: -0.0120 S13: -0.0120 REMARK 3 S21: -0.0949 S22: 0.0617 S23: 0.1852 REMARK 3 S31: -0.0164 S32: -0.3132 S33: -0.0693 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 353 A 419 REMARK 3 ORIGIN FOR THE GROUP (A): 30.9660 19.6970 -6.4830 REMARK 3 T TENSOR REMARK 3 T11: 0.1735 T22: 0.1956 REMARK 3 T33: 0.1400 T12: -0.0180 REMARK 3 T13: -0.0306 T23: 0.0194 REMARK 3 L TENSOR REMARK 3 L11: 3.4016 L22: 3.7563 REMARK 3 L33: 4.1192 L12: 0.6147 REMARK 3 L13: -0.1367 L23: 0.1895 REMARK 3 S TENSOR REMARK 3 S11: -0.0486 S12: 0.2349 S13: -0.4428 REMARK 3 S21: -0.4306 S22: 0.0031 S23: -0.1780 REMARK 3 S31: 0.4878 S32: 0.1862 S33: 0.0455 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES RESIDUAL ONLY. THE C-TERMINUS IS DISORDERED, REMARK 3 BUT OXT IS USED TO MODEL LAST ORDERED ATOM PLEASE LINK TO 2W8J, REMARK 3 2W8U, 2W8T, 2W8V REMARK 4 REMARK 4 2W8W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1290038591. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19876 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.140 REMARK 200 RESOLUTION RANGE LOW (A) : 28.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.95000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.95000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.80000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.56500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.80000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.56500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.95000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.80000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.56500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 44.95000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.80000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.56500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 9290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 73.60000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 44.95000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASN 100 TO TYR REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 GLN A 7 REMARK 465 PRO A 8 REMARK 465 HIS A 9 REMARK 465 ALA A 10 REMARK 465 LEU A 11 REMARK 465 PRO A 12 REMARK 465 ALA A 13 REMARK 465 ASP A 14 REMARK 465 ALA A 15 REMARK 465 PRO A 16 REMARK 465 ASP A 17 REMARK 465 ILE A 18 REMARK 465 ALA A 19 REMARK 465 PRO A 20 REMARK 465 GLU A 21 REMARK 465 ARG A 22 REMARK 465 LEU A 421 REMARK 465 GLU A 422 REMARK 465 HIS A 423 REMARK 465 HIS A 424 REMARK 465 HIS A 425 REMARK 465 HIS A 426 REMARK 465 HIS A 427 REMARK 465 HIS A 428 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY A 420 CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 72 OG SER A 392 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 45 106.43 -59.34 REMARK 500 TYR A 100 52.99 -107.58 REMARK 500 LEU A 105 -132.80 -121.65 REMARK 500 LYS A 265 -100.38 -101.34 REMARK 500 THR A 269 -153.81 -151.65 REMARK 500 PHE A 293 43.35 -102.56 REMARK 500 ALA A 315 56.42 -92.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 106 GLY A 107 149.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLS A 1420 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2W8U RELATED DB: PDB REMARK 900 SPT WITH PLP, N100Y REMARK 900 RELATED ID: 2W8V RELATED DB: PDB REMARK 900 SPT WITH PLP, N100W REMARK 900 RELATED ID: 2JGT RELATED DB: PDB REMARK 900 HIGH RESOLUTION STRUCTURE OF SPT WITH PLP INTERNAL ALDIMINE REMARK 900 RELATED ID: 2W8T RELATED DB: PDB REMARK 900 SPT WITH PLP, N100C REMARK 900 RELATED ID: 2JG2 RELATED DB: PDB REMARK 900 HIGH RESOLUTION STRUCTURE OF SPT WITH PLP INTERNAL ALDIMINE REMARK 900 RELATED ID: 2W8J RELATED DB: PDB REMARK 900 SPT WITH PLP-SER REMARK 999 REMARK 999 SEQUENCE REMARK 999 C-TER HIS TAG DBREF 2W8W A 2 420 UNP Q93UV0 Q93UV0_PSEPA 2 420 DBREF 2W8W A 421 428 PDB 2W8W 2W8W 421 428 SEQADV 2W8W TYR A 100 UNP Q93UV0 ASN 100 ENGINEERED MUTATION SEQRES 1 A 427 THR GLU ALA ALA ALA GLN PRO HIS ALA LEU PRO ALA ASP SEQRES 2 A 427 ALA PRO ASP ILE ALA PRO GLU ARG ASP LEU LEU SER LYS SEQRES 3 A 427 PHE ASP GLY LEU ILE ALA GLU ARG GLN LYS LEU LEU ASP SEQRES 4 A 427 SER GLY VAL THR ASP PRO PHE ALA ILE VAL MET GLU GLN SEQRES 5 A 427 VAL LYS SER PRO THR GLU ALA VAL ILE ARG GLY LYS ASP SEQRES 6 A 427 THR ILE LEU LEU GLY THR TYR ASN TYR MET GLY MET THR SEQRES 7 A 427 PHE ASP PRO ASP VAL ILE ALA ALA GLY LYS GLU ALA LEU SEQRES 8 A 427 GLU LYS PHE GLY SER GLY THR TYR GLY SER ARG MET LEU SEQRES 9 A 427 ASN GLY THR PHE HIS ASP HIS MET GLU VAL GLU GLN ALA SEQRES 10 A 427 LEU ARG ASP PHE TYR GLY THR THR GLY ALA ILE VAL PHE SEQRES 11 A 427 SER THR GLY TYR MET ALA ASN LEU GLY ILE ILE SER THR SEQRES 12 A 427 LEU ALA GLY LYS GLY GLU TYR VAL ILE LEU ASP ALA ASP SEQRES 13 A 427 SER HIS ALA SER ILE TYR ASP GLY CYS GLN GLN GLY ASN SEQRES 14 A 427 ALA GLU ILE VAL ARG PHE ARG HIS ASN SER VAL GLU ASP SEQRES 15 A 427 LEU ASP LYS ARG LEU GLY ARG LEU PRO LYS GLU PRO ALA SEQRES 16 A 427 LYS LEU VAL VAL LEU GLU GLY VAL TYR SER MET LEU GLY SEQRES 17 A 427 ASP ILE ALA PRO LEU LYS GLU MET VAL ALA VAL ALA LYS SEQRES 18 A 427 LYS HIS GLY ALA MET VAL LEU VAL ASP GLU ALA HIS SER SEQRES 19 A 427 MET GLY PHE PHE GLY PRO ASN GLY ARG GLY VAL TYR GLU SEQRES 20 A 427 ALA GLN GLY LEU GLU GLY GLN ILE ASP PHE VAL VAL GLY SEQRES 21 A 427 THR PHE SER LYS SER VAL GLY THR VAL GLY GLY PHE VAL SEQRES 22 A 427 VAL SER ASN HIS PRO LYS PHE GLU ALA VAL ARG LEU ALA SEQRES 23 A 427 CYS ARG PRO TYR ILE PHE THR ALA SER LEU PRO PRO SER SEQRES 24 A 427 VAL VAL ALA THR ALA THR THR SER ILE ARG LYS LEU MET SEQRES 25 A 427 THR ALA HIS GLU LYS ARG GLU ARG LEU TRP SER ASN ALA SEQRES 26 A 427 ARG ALA LEU HIS GLY GLY LEU LYS ALA MET GLY PHE ARG SEQRES 27 A 427 LEU GLY THR GLU THR CYS ASP SER ALA ILE VAL ALA VAL SEQRES 28 A 427 MET LEU GLU ASP GLN GLU GLN ALA ALA MET MET TRP GLN SEQRES 29 A 427 ALA LEU LEU ASP GLY GLY LEU TYR VAL ASN MET ALA ARG SEQRES 30 A 427 PRO PRO ALA THR PRO ALA GLY THR PHE LEU LEU ARG CYS SEQRES 31 A 427 SER ILE CYS ALA GLU HIS THR PRO ALA GLN ILE GLN THR SEQRES 32 A 427 VAL LEU GLY MET PHE GLN ALA ALA GLY ARG ALA VAL GLY SEQRES 33 A 427 VAL ILE GLY LEU GLU HIS HIS HIS HIS HIS HIS HET PLS A1420 22 HETNAM PLS [3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4- HETNAM 2 PLS YLMETHYL]-SERINE HETSYN PLS PYRIDOXYL-SERINE-5-MONOPHOSPHATE FORMUL 2 PLS C11 H17 N2 O8 P FORMUL 3 HOH *150(H2 O) HELIX 1 1 LEU A 25 LYS A 27 5 3 HELIX 2 2 PHE A 28 SER A 41 1 14 HELIX 3 3 ASP A 45 ILE A 49 5 5 HELIX 4 4 GLY A 77 PHE A 80 5 4 HELIX 5 5 ASP A 81 GLY A 96 1 16 HELIX 6 6 PHE A 109 GLY A 124 1 16 HELIX 7 7 THR A 133 ALA A 146 1 14 HELIX 8 8 HIS A 159 GLY A 169 1 11 HELIX 9 9 SER A 180 LEU A 191 1 12 HELIX 10 10 PRO A 213 HIS A 224 1 12 HELIX 11 11 GLY A 245 GLN A 250 1 6 HELIX 12 12 LYS A 280 GLU A 282 5 3 HELIX 13 13 ALA A 283 CYS A 288 1 6 HELIX 14 14 CYS A 288 PHE A 293 1 6 HELIX 15 15 PRO A 298 MET A 313 1 16 HELIX 16 16 ALA A 315 MET A 336 1 22 HELIX 17 17 ASP A 356 GLY A 370 1 15 HELIX 18 18 THR A 398 GLY A 417 1 20 SHEET 1 AA 4 GLN A 53 VAL A 54 0 SHEET 2 AA 4 GLU A 59 ILE A 62 -1 N VAL A 61 O GLN A 53 SHEET 3 AA 4 LYS A 65 LEU A 69 -1 O LYS A 65 N ILE A 62 SHEET 4 AA 4 LEU A 372 TYR A 373 1 N TYR A 373 O ILE A 68 SHEET 1 AB 7 GLY A 127 PHE A 131 0 SHEET 2 AB 7 GLY A 272 SER A 276 -1 O GLY A 272 N PHE A 131 SHEET 3 AB 7 PHE A 258 THR A 262 -1 O VAL A 259 N VAL A 275 SHEET 4 AB 7 MET A 227 ASP A 231 1 O VAL A 228 N PHE A 258 SHEET 5 AB 7 LYS A 197 GLU A 202 1 O LYS A 197 N MET A 227 SHEET 6 AB 7 TYR A 151 ASP A 155 1 O TYR A 151 N LEU A 198 SHEET 7 AB 7 GLU A 172 PHE A 176 1 O GLU A 172 N VAL A 152 SHEET 1 AC 2 VAL A 204 TYR A 205 0 SHEET 2 AC 2 ASP A 210 ILE A 211 -1 O ASP A 210 N TYR A 205 SHEET 1 AD 4 ARG A 339 LEU A 340 0 SHEET 2 AD 4 ILE A 349 LEU A 354 -1 O MET A 353 N ARG A 339 SHEET 3 AD 4 PHE A 387 SER A 392 -1 O PHE A 387 N LEU A 354 SHEET 4 AD 4 ASN A 375 ALA A 377 -1 O ASN A 375 N ARG A 390 CISPEP 1 PRO A 379 PRO A 380 0 2.90 SITE 1 AC1 17 SER A 102 GLY A 134 TYR A 135 HIS A 159 SITE 2 AC1 17 GLU A 202 ASP A 231 HIS A 234 THR A 262 SITE 3 AC1 17 SER A 264 LYS A 265 THR A 294 ALA A 295 SITE 4 AC1 17 HOH A2028 HOH A2147 HOH A2148 HOH A2149 SITE 5 AC1 17 HOH A2150 CRYST1 73.600 107.130 89.900 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013587 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009334 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011123 0.00000