HEADER OXIDOREDUCTASE 20-JAN-09 2W8Z TITLE GEOBACILLUS STEAROTHERMOPHILUS 6-PHOSPHOGLUCONATE DEHYDROGENASE WITH TITLE 2 BOUND 6- PHOSPHOGLUCONATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 6-PHOSPHOGLUCONATE DEHYDROGENASE, DECARBOXYLATING; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.44; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 ATCC: 12980; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PLYSS; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15B MODIFIED TO CONTAIN TEV CLEAVAGE SOURCE 9 SITE; SOURCE 10 OTHER_DETAILS: ATCC/LGC-BIOCHEM KEYWDS OXIDOREDUCTASE, 6PDH, PHSOPHOGLUCONATE, DEHYDROGENASE, GEOBACILLUS EXPDTA X-RAY DIFFRACTION AUTHOR S.CAMERON,W.N.HUNTER REVDAT 5 13-DEC-23 2W8Z 1 REMARK REVDAT 4 16-OCT-19 2W8Z 1 REMARK REVDAT 3 16-MAY-12 2W8Z 1 TITLE REMARK VERSN REVDAT 2 12-MAY-09 2W8Z 1 JRNL REVDAT 1 07-APR-09 2W8Z 0 JRNL AUTH S.CAMERON,V.P.MARTINI,J.IULEK,W.N.HUNTER JRNL TITL GEOBACILLUS STEAROTHERMOPHILUS 6-PHOSPHOGLUCONATE JRNL TITL 2 DEHYDROGENASE, COMPLEXED WITH 6-PHOSPHOGLUCONATE. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 65 450 2009 JRNL REFN ESSN 1744-3091 JRNL PMID 19407374 JRNL DOI 10.1107/S1744309109012767 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 49316 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2618 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3578 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 189 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7293 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 55 REMARK 3 SOLVENT ATOMS : 347 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.20000 REMARK 3 B22 (A**2) : -2.37000 REMARK 3 B33 (A**2) : 0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.284 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.219 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.163 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.813 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7708 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10450 ; 1.389 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 991 ; 5.460 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 356 ;39.049 ;24.270 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1368 ;16.960 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;18.141 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1136 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5852 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3786 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5247 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 493 ; 0.161 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 45 ; 0.147 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.153 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4891 ; 0.617 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7602 ; 1.063 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3208 ; 1.556 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2823 ; 2.430 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2W8Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1290038512. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : TORODIAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52157 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 92.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2IYO REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE, 2.2 M AMMONIUM REMARK 280 SULFATE, PH 7.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.51750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.41350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.98250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.41350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.51750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.98250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 12860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -96.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 LYS B 469 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 316 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 456 OD1 ASP B 458 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 308 CB VAL A 308 CG1 -0.319 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 308 CA - CB - CG1 ANGL. DEV. = 13.6 DEGREES REMARK 500 ARG B 415 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 3 122.28 77.19 REMARK 500 LEU A 11 51.15 -115.18 REMARK 500 ASP A 175 -109.07 38.87 REMARK 500 ASN A 227 118.24 -39.00 REMARK 500 PHE A 371 -35.50 -28.12 REMARK 500 PRO A 438 12.93 -68.91 REMARK 500 THR A 453 159.33 74.67 REMARK 500 ASP B 175 -117.86 42.18 REMARK 500 MET B 292 43.11 -95.50 REMARK 500 ASN B 349 63.48 60.22 REMARK 500 PRO B 438 22.41 -79.25 REMARK 500 ALA B 451 60.80 36.66 REMARK 500 THR B 453 155.04 72.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 6PG A 1470 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1471 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 1472 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 1474 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 6PG B 1469 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2W90 RELATED DB: PDB REMARK 900 GEOBACILLUS STEAROTHERMOPHILUS 6-PHOSPHOGLUCONATE WITH BOUND 6- REMARK 900 PHOSPHOGLUCONATE REMARK 999 REMARK 999 SEQUENCE REMARK 999 NOT IN UNIPROT, SEQUENCE DERIVED BY BLAST AGAINST REMARK 999 UNFINISHED GEOBACILLUS GENOME DBREF 2W8Z A 0 469 PDB 2W8Z 2W8Z 0 469 DBREF 2W8Z B 0 469 PDB 2W8Z 2W8Z 0 469 SEQRES 1 A 470 HIS MET ALA LYS HIS GLN ILE GLY VAL ILE GLY LEU ALA SEQRES 2 A 470 VAL MET GLY LYS ASN LEU ALA LEU ASN ILE GLU SER LYS SEQRES 3 A 470 GLY TYR SER VAL ALA VAL TYR ASN ARG LEU ARG GLU LYS SEQRES 4 A 470 THR ASP GLU PHE LEU GLN GLU ALA LYS GLY LYS ASN ILE SEQRES 5 A 470 VAL GLY THR TYR SER ILE GLU GLU PHE VAL ASN ALA LEU SEQRES 6 A 470 GLU LYS PRO ARG LYS ILE LEU LEU MET VAL LYS ALA GLY SEQRES 7 A 470 ALA PRO THR ASP ALA THR ILE GLU GLN LEU LYS PRO HIS SEQRES 8 A 470 LEU GLU LYS GLY ASP ILE VAL ILE ASP GLY GLY ASN THR SEQRES 9 A 470 TYR PHE LYS ASP THR GLN ARG ARG ASN LYS GLU LEU ALA SEQRES 10 A 470 GLU LEU GLY ILE HIS PHE ILE GLY THR GLY VAL SER GLY SEQRES 11 A 470 GLY GLU GLU GLY ALA LEU LYS GLY PRO SER ILE MET PRO SEQRES 12 A 470 GLY GLY GLN LYS GLU ALA HIS GLU LEU VAL ARG PRO ILE SEQRES 13 A 470 PHE GLU ALA ILE ALA ALA LYS VAL ASP GLY GLU PRO CYS SEQRES 14 A 470 THR THR TYR ILE GLY PRO ASP GLY ALA GLY HIS TYR VAL SEQRES 15 A 470 LYS MET VAL HIS ASN GLY ILE GLU TYR GLY ASP MET GLN SEQRES 16 A 470 LEU ILE ALA GLU ALA TYR PHE LEU LEU LYS HIS VAL LEU SEQRES 17 A 470 GLY MET ASP ALA ALA GLU LEU HIS GLU VAL PHE ALA ASP SEQRES 18 A 470 TRP ASN LYS GLY GLU LEU ASN SER TYR LEU ILE GLU ILE SEQRES 19 A 470 THR ALA ASP ILE PHE THR LYS ILE ASP GLU GLU THR GLY SEQRES 20 A 470 LYS PRO LEU VAL ASP VAL ILE LEU ASP LYS ALA GLY GLN SEQRES 21 A 470 LYS GLY THR GLY LYS TRP THR SER GLN ASN ALA LEU ASP SEQRES 22 A 470 LEU GLY VAL PRO LEU PRO ILE ILE THR GLU SER VAL PHE SEQRES 23 A 470 ALA ARG PHE LEU SER ALA MET LYS ASP GLU ARG VAL LYS SEQRES 24 A 470 ALA SER LYS VAL LEU ALA GLY PRO ALA VAL LYS PRO PHE SEQRES 25 A 470 GLU GLY ASP ARG ALA HIS PHE ILE GLU ALA VAL ARG ARG SEQRES 26 A 470 ALA LEU TYR MET SER LYS ILE CYS SER TYR ALA GLN GLY SEQRES 27 A 470 PHE ALA GLN MET LYS ALA ALA SER GLU GLU TYR ASN TRP SEQRES 28 A 470 ASN LEU ARG TYR GLY ASP ILE ALA MET ILE PHE ARG GLY SEQRES 29 A 470 GLY CYS ILE ILE ARG ALA GLN PHE LEU GLN LYS ILE LYS SEQRES 30 A 470 GLU ALA TYR ASP ARG ASP PRO ALA LEU SER ASN LEU LEU SEQRES 31 A 470 LEU ASP SER TYR PHE LYS ASP ILE VAL GLU ARG TYR GLN SEQRES 32 A 470 ASP ALA LEU ARG GLU ILE VAL ALA THR ALA ALA MET ARG SEQRES 33 A 470 GLY ILE PRO VAL PRO GLY SER ALA SER ALA LEU ALA TYR SEQRES 34 A 470 TYR ASP SER TYR ARG THR ALA VAL LEU PRO ALA ASN LEU SEQRES 35 A 470 ILE GLN ALA GLN ARG ASP TYR PHE GLY ALA HIS THR TYR SEQRES 36 A 470 GLU ARG VAL ASP LYS GLU GLY ILE PHE HIS THR GLU TRP SEQRES 37 A 470 LEU LYS SEQRES 1 B 470 HIS MET ALA LYS HIS GLN ILE GLY VAL ILE GLY LEU ALA SEQRES 2 B 470 VAL MET GLY LYS ASN LEU ALA LEU ASN ILE GLU SER LYS SEQRES 3 B 470 GLY TYR SER VAL ALA VAL TYR ASN ARG LEU ARG GLU LYS SEQRES 4 B 470 THR ASP GLU PHE LEU GLN GLU ALA LYS GLY LYS ASN ILE SEQRES 5 B 470 VAL GLY THR TYR SER ILE GLU GLU PHE VAL ASN ALA LEU SEQRES 6 B 470 GLU LYS PRO ARG LYS ILE LEU LEU MET VAL LYS ALA GLY SEQRES 7 B 470 ALA PRO THR ASP ALA THR ILE GLU GLN LEU LYS PRO HIS SEQRES 8 B 470 LEU GLU LYS GLY ASP ILE VAL ILE ASP GLY GLY ASN THR SEQRES 9 B 470 TYR PHE LYS ASP THR GLN ARG ARG ASN LYS GLU LEU ALA SEQRES 10 B 470 GLU LEU GLY ILE HIS PHE ILE GLY THR GLY VAL SER GLY SEQRES 11 B 470 GLY GLU GLU GLY ALA LEU LYS GLY PRO SER ILE MET PRO SEQRES 12 B 470 GLY GLY GLN LYS GLU ALA HIS GLU LEU VAL ARG PRO ILE SEQRES 13 B 470 PHE GLU ALA ILE ALA ALA LYS VAL ASP GLY GLU PRO CYS SEQRES 14 B 470 THR THR TYR ILE GLY PRO ASP GLY ALA GLY HIS TYR VAL SEQRES 15 B 470 LYS MET VAL HIS ASN GLY ILE GLU TYR GLY ASP MET GLN SEQRES 16 B 470 LEU ILE ALA GLU ALA TYR PHE LEU LEU LYS HIS VAL LEU SEQRES 17 B 470 GLY MET ASP ALA ALA GLU LEU HIS GLU VAL PHE ALA ASP SEQRES 18 B 470 TRP ASN LYS GLY GLU LEU ASN SER TYR LEU ILE GLU ILE SEQRES 19 B 470 THR ALA ASP ILE PHE THR LYS ILE ASP GLU GLU THR GLY SEQRES 20 B 470 LYS PRO LEU VAL ASP VAL ILE LEU ASP LYS ALA GLY GLN SEQRES 21 B 470 LYS GLY THR GLY LYS TRP THR SER GLN ASN ALA LEU ASP SEQRES 22 B 470 LEU GLY VAL PRO LEU PRO ILE ILE THR GLU SER VAL PHE SEQRES 23 B 470 ALA ARG PHE LEU SER ALA MET LYS ASP GLU ARG VAL LYS SEQRES 24 B 470 ALA SER LYS VAL LEU ALA GLY PRO ALA VAL LYS PRO PHE SEQRES 25 B 470 GLU GLY ASP ARG ALA HIS PHE ILE GLU ALA VAL ARG ARG SEQRES 26 B 470 ALA LEU TYR MET SER LYS ILE CYS SER TYR ALA GLN GLY SEQRES 27 B 470 PHE ALA GLN MET LYS ALA ALA SER GLU GLU TYR ASN TRP SEQRES 28 B 470 ASN LEU ARG TYR GLY ASP ILE ALA MET ILE PHE ARG GLY SEQRES 29 B 470 GLY CYS ILE ILE ARG ALA GLN PHE LEU GLN LYS ILE LYS SEQRES 30 B 470 GLU ALA TYR ASP ARG ASP PRO ALA LEU SER ASN LEU LEU SEQRES 31 B 470 LEU ASP SER TYR PHE LYS ASP ILE VAL GLU ARG TYR GLN SEQRES 32 B 470 ASP ALA LEU ARG GLU ILE VAL ALA THR ALA ALA MET ARG SEQRES 33 B 470 GLY ILE PRO VAL PRO GLY SER ALA SER ALA LEU ALA TYR SEQRES 34 B 470 TYR ASP SER TYR ARG THR ALA VAL LEU PRO ALA ASN LEU SEQRES 35 B 470 ILE GLN ALA GLN ARG ASP TYR PHE GLY ALA HIS THR TYR SEQRES 36 B 470 GLU ARG VAL ASP LYS GLU GLY ILE PHE HIS THR GLU TRP SEQRES 37 B 470 LEU LYS HET 6PG A1470 17 HET SO4 A1471 5 HET TRS A1472 16 HET TRS A1474 8 HET 6PG B1469 17 HETNAM 6PG 6-PHOSPHOGLUCONIC ACID HETNAM SO4 SULFATE ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 3 6PG 2(C6 H13 O10 P) FORMUL 4 SO4 O4 S 2- FORMUL 5 TRS 2(C4 H12 N O3 1+) FORMUL 8 HOH *347(H2 O) HELIX 1 1 ALA A 12 SER A 24 1 13 HELIX 2 2 LEU A 35 ALA A 46 1 12 HELIX 3 3 SER A 56 ALA A 63 1 8 HELIX 4 4 GLY A 77 LYS A 88 1 12 HELIX 5 5 TYR A 104 LEU A 118 1 15 HELIX 6 6 GLY A 129 GLY A 137 1 9 HELIX 7 7 GLN A 145 ALA A 160 1 16 HELIX 8 8 GLY A 176 GLY A 208 1 33 HELIX 9 9 ASP A 210 ASN A 222 1 13 HELIX 10 10 SER A 228 PHE A 238 1 11 HELIX 11 11 LEU A 249 VAL A 252 5 4 HELIX 12 12 LYS A 264 GLY A 274 1 11 HELIX 13 13 LEU A 277 MET A 292 1 16 HELIX 14 14 MET A 292 LEU A 303 1 12 HELIX 15 15 ASP A 314 ASN A 349 1 36 HELIX 16 16 ARG A 353 PHE A 361 1 9 HELIX 17 17 PHE A 371 ASP A 382 1 12 HELIX 18 18 ASN A 387 LEU A 390 5 4 HELIX 19 19 ASP A 391 GLY A 416 1 26 HELIX 20 20 VAL A 419 ARG A 433 1 15 HELIX 21 21 PRO A 438 ALA A 451 1 14 HELIX 22 22 ALA B 12 LYS B 25 1 14 HELIX 23 23 LEU B 35 ALA B 46 1 12 HELIX 24 24 SER B 56 ALA B 63 1 8 HELIX 25 25 GLY B 77 LYS B 88 1 12 HELIX 26 26 TYR B 104 GLU B 117 1 14 HELIX 27 27 GLY B 129 GLY B 137 1 9 HELIX 28 28 GLN B 145 ALA B 160 1 16 HELIX 29 29 GLY B 176 LEU B 207 1 32 HELIX 30 30 ASP B 210 ASN B 222 1 13 HELIX 31 31 SER B 228 PHE B 238 1 11 HELIX 32 32 LEU B 249 VAL B 252 5 4 HELIX 33 33 LYS B 260 GLY B 263 5 4 HELIX 34 34 LYS B 264 GLY B 274 1 11 HELIX 35 35 LEU B 277 ALA B 291 1 15 HELIX 36 36 MET B 292 LYS B 301 1 10 HELIX 37 37 ASP B 314 ASN B 349 1 36 HELIX 38 38 ARG B 353 PHE B 361 1 9 HELIX 39 39 GLN B 370 ASP B 382 1 13 HELIX 40 40 ASN B 387 LEU B 390 5 4 HELIX 41 41 ASP B 391 GLY B 416 1 26 HELIX 42 42 VAL B 419 ARG B 433 1 15 HELIX 43 43 PRO B 438 ALA B 451 1 14 SHEET 1 AA 7 ILE A 51 GLY A 53 0 SHEET 2 AA 7 VAL A 29 TYR A 32 1 O VAL A 29 N VAL A 52 SHEET 3 AA 7 ILE A 6 ILE A 9 1 O ILE A 6 N ALA A 30 SHEET 4 AA 7 LYS A 69 LEU A 72 1 O LYS A 69 N GLY A 7 SHEET 5 AA 7 ILE A 96 ASP A 99 1 O ILE A 96 N ILE A 70 SHEET 6 AA 7 HIS A 121 SER A 128 1 O HIS A 121 N VAL A 97 SHEET 7 AA 7 SER A 139 GLY A 144 -1 O SER A 139 N SER A 128 SHEET 1 AB 2 LYS A 162 VAL A 163 0 SHEET 2 AB 2 GLU A 166 PRO A 167 -1 O GLU A 166 N VAL A 163 SHEET 1 BA 7 ILE B 51 GLY B 53 0 SHEET 2 BA 7 VAL B 29 TYR B 32 1 O VAL B 29 N VAL B 52 SHEET 3 BA 7 ILE B 6 ILE B 9 1 O ILE B 6 N ALA B 30 SHEET 4 BA 7 LYS B 69 LEU B 72 1 O LYS B 69 N GLY B 7 SHEET 5 BA 7 ILE B 96 ASP B 99 1 O ILE B 96 N ILE B 70 SHEET 6 BA 7 HIS B 121 SER B 128 1 O HIS B 121 N VAL B 97 SHEET 7 BA 7 SER B 139 GLY B 144 -1 O SER B 139 N SER B 128 SHEET 1 BB 2 LYS B 162 VAL B 163 0 SHEET 2 BB 2 GLU B 166 PRO B 167 -1 O GLU B 166 N VAL B 163 CISPEP 1 LYS A 66 PRO A 67 0 -7.17 CISPEP 2 LYS B 66 PRO B 67 0 -9.08 SITE 1 AC1 20 MET A 14 ASN A 102 VAL A 127 SER A 128 SITE 2 AC1 20 GLY A 129 GLY A 130 LYS A 182 HIS A 185 SITE 3 AC1 20 ASN A 186 GLU A 189 TYR A 190 GLN A 259 SITE 4 AC1 20 LYS A 260 ARG A 287 HOH A2067 HOH A2070 SITE 5 AC1 20 HOH A2158 HOH A2159 ARG B 446 HIS B 452 SITE 1 AC2 6 LYS A 256 ALA A 291 MET A 292 LYS A 293 SITE 2 AC2 6 ASP A 294 HOH A2160 SITE 1 AC3 13 ARG A 446 HIS A 452 THR A 453 HOH A2161 SITE 2 AC3 13 HOH A2162 HOH A2163 HOH A2164 HOH A2165 SITE 3 AC3 13 HOH A2166 HOH A2167 GLY B 258 GLN B 259 SITE 4 AC3 13 LYS B 260 SITE 1 AC4 6 SER A 345 GLU A 346 ASN A 349 TRP A 350 SITE 2 AC4 6 ASN A 351 HOH A2168 SITE 1 AC5 24 ARG A 446 HIS A 452 ASN B 102 SER B 128 SITE 2 AC5 24 GLY B 129 GLY B 130 LYS B 182 HIS B 185 SITE 3 AC5 24 ASN B 186 GLU B 189 TYR B 190 GLN B 259 SITE 4 AC5 24 LYS B 260 THR B 262 ARG B 287 ILE B 366 SITE 5 AC5 24 HOH B2062 HOH B2172 HOH B2174 HOH B2175 SITE 6 AC5 24 HOH B2176 HOH B2177 HOH B2178 HOH B2179 CRYST1 67.035 119.965 142.827 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014918 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008336 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007001 0.00000