HEADER CELL CYCLE 22-JAN-09 2W99 TITLE CRYSTAL STRUCTURE OF CDK4 IN COMPLEX WITH A D-TYPE CYCLIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: G1/S-SPECIFIC CYCLIN-D1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: D-TYPE CYCLIN, PRAD1 ONCOGENE; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CELL DIVISION PROTEIN KINASE 4; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: KINASE DOMAIN, RESIDUES 1-44,48-303; COMPND 10 SYNONYM: CDK4, CYCLIN-DEPENDENT KINASE 4, PSK-J3; COMPND 11 EC: 2.7.11.22; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 15 EXPRESSION_SYSTEM_CELL_LINE: SF21; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS SERINE/THREONINE-PROTEIN KINASE, CHROMOSOMAL REARRANGEMENT, ATP- KEYWDS 2 BINDING, TRANSFERASE, POLYMORPHISM, CELL DIVISION, PROTO-ONCOGENE, KEYWDS 3 PHOSPHOPROTEIN, DISEASE MUTATION, NUCLEOTIDE-BINDING, CYCLIN KEYWDS 4 DEPENDENT KINASE, KINASE, CYCLIN, ONCOLOGY, CELL CYCLE, DRUG DESGN EXPDTA X-RAY DIFFRACTION AUTHOR P.J.DAY,A.CLEASBY,I.J.TICKLE,M.O.REILLY,J.E.COYLE,F.P.HOLDING, AUTHOR 2 R.L.MCMENAMIN,J.YON,R.CHOPRA,C.LENGAUER,H.JHOTI REVDAT 4 13-DEC-23 2W99 1 REMARK REVDAT 3 24-APR-19 2W99 1 SOURCE REVDAT 2 31-MAR-09 2W99 1 JRNL REVDAT 1 10-MAR-09 2W99 0 JRNL AUTH P.J.DAY,A.CLEASBY,I.J.TICKLE,M.O'REILLY,J.E.COYLE, JRNL AUTH 2 F.P.HOLDING,R.L.MCMENAMIN,J.YON,R.CHOPRA,C.LENGAUER,H.JHOTI JRNL TITL CRYSTAL STRUCTURE OF HUMAN CDK4 IN COMPLEX WITH A D-TYPE JRNL TITL 2 CYCLIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 4166 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19237565 JRNL DOI 10.1073/PNAS.0809645106 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.1.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 94.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 17640 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.790 REMARK 3 FREE R VALUE TEST SET COUNT : 845 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.27 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2656 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2166 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2524 REMARK 3 BIN R VALUE (WORKING SET) : 0.2142 REMARK 3 BIN FREE R VALUE : 0.2633 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.97 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 132 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4259 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 126 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 78.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 86.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.53183 REMARK 3 B22 (A**2) : 10.15250 REMARK 3 B33 (A**2) : -5.62067 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : NULL ; NULL ; NULL REMARK 3 BOND ANGLES : NULL ; NULL ; NULL REMARK 3 TORSION ANGLES : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : NULL ; NULL ; NULL REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. DISORDERED REGIONS WERE MODELLED STEREOCHEMICALLY REMARK 3 WHERE THE DENSITY WAS NOT CLEAR. IN REGIONS WHERE THE DENSITY REMARK 3 WAS UNINTERPRETABLE OR ABSENT, RESIDUES WERE OMITTED. REMARK 4 REMARK 4 2W99 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1290038619. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.94 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17640 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 94.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1BLX REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.51150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.37350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.34200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 94.37350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.51150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.34200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN B, GLY 43 TO GLU REMARK 400 ENGINEERED RESIDUE IN CHAIN B, GLY 44 TO GLU REMARK 400 ENGINEERED RESIDUE IN CHAIN B, THR 172 TO ALA REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 HIS A 3 REMARK 465 GLN A 4 REMARK 465 LEU A 5 REMARK 465 LEU A 6 REMARK 465 CYS A 7 REMARK 465 CYS A 8 REMARK 465 GLU A 9 REMARK 465 VAL A 10 REMARK 465 GLU A 11 REMARK 465 THR A 12 REMARK 465 ILE A 13 REMARK 465 ARG A 14 REMARK 465 ARG A 15 REMARK 465 ALA A 16 REMARK 465 TYR A 17 REMARK 465 PRO A 18 REMARK 465 ASP A 19 REMARK 465 ALA A 20 REMARK 465 ASN A 21 REMARK 465 PRO A 268 REMARK 465 LYS A 269 REMARK 465 ALA A 270 REMARK 465 ALA A 271 REMARK 465 MET B 1 REMARK 465 HIS B 296 REMARK 465 LYS B 297 REMARK 465 ASP B 298 REMARK 465 GLU B 299 REMARK 465 GLY B 300 REMARK 465 ASN B 301 REMARK 465 PRO B 302 REMARK 465 GLU B 303 REMARK 465 HIS B 304 REMARK 465 HIS B 305 REMARK 465 HIS B 306 REMARK 465 HIS B 307 REMARK 465 HIS B 308 REMARK 465 HIS B 309 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 72 49.16 38.28 REMARK 500 ASN A 222 -58.10 -137.51 REMARK 500 PHE A 223 46.02 -94.21 REMARK 500 LEU A 224 23.60 -70.87 REMARK 500 ARG A 228 53.13 36.63 REMARK 500 LYS A 238 71.40 53.29 REMARK 500 SER A 257 -5.12 -56.94 REMARK 500 GLN A 264 7.18 -66.54 REMARK 500 MET A 266 -72.48 -68.59 REMARK 500 ARG B 5 50.99 -63.41 REMARK 500 VAL B 9 -122.21 -140.01 REMARK 500 ALA B 10 179.71 -41.81 REMARK 500 ILE B 12 -4.76 -56.69 REMARK 500 ALA B 16 -52.45 -11.94 REMARK 500 VAL B 20 73.22 -110.28 REMARK 500 LEU B 34 99.27 -66.48 REMARK 500 LEU B 63 -43.13 -162.88 REMARK 500 ASP B 84 101.40 0.76 REMARK 500 ARG B 85 2.91 82.82 REMARK 500 THR B 102 -13.99 -47.84 REMARK 500 LYS B 106 53.44 -67.95 REMARK 500 LEU B 112 -165.72 -104.81 REMARK 500 CYS B 135 12.17 80.08 REMARK 500 ARG B 139 -72.61 -89.35 REMARK 500 ASN B 145 38.24 -92.75 REMARK 500 SER B 150 -175.48 178.48 REMARK 500 THR B 153 -60.07 -152.03 REMARK 500 VAL B 154 51.78 74.49 REMARK 500 ASP B 158 20.39 48.57 REMARK 500 PHE B 159 153.47 -49.30 REMARK 500 LEU B 161 -34.58 -10.45 REMARK 500 MET B 169 14.48 -66.29 REMARK 500 PRO B 173 -164.15 -106.11 REMARK 500 VAL B 174 -70.20 -138.18 REMARK 500 VAL B 176 34.59 70.09 REMARK 500 THR B 177 59.54 -58.25 REMARK 500 LEU B 178 50.76 -67.38 REMARK 500 PRO B 183 -9.91 -56.65 REMARK 500 LEU B 186 17.57 -143.54 REMARK 500 GLN B 188 -123.66 -133.78 REMARK 500 SER B 189 56.57 -169.69 REMARK 500 SER B 199 -17.11 -48.67 REMARK 500 ARG B 209 30.40 -147.60 REMARK 500 ARG B 210 -118.47 -119.88 REMARK 500 LYS B 211 -167.28 -123.49 REMARK 500 PHE B 214 28.66 -146.36 REMARK 500 ASN B 217 -79.63 -176.63 REMARK 500 ASP B 241 -23.80 -151.74 REMARK 500 SER B 243 69.63 75.28 REMARK 500 PHE B 249 -63.77 -103.01 REMARK 500 REMARK 500 THIS ENTRY HAS 56 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2005 DISTANCE = 6.32 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LD2 RELATED DB: PDB REMARK 900 THEORETICAL STRUCTURE OF HUMAN CYCLIN- DEPENDENT KINASE 4(CDK4) REMARK 900 RELATED ID: 2W96 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CDK4 IN COMPLEX WITH A D-TYPE CYCLIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 1-271 WERE EXPRESSED, BUT THE N AND C-TERMINAL REMARK 999 WERE DISORDERED AND THEREFORE NOT COMPLETE IN THE MODEL. REMARK 999 HIS TAG WAS ADDED AT THE C-TERMINAL. RESIDUES 45, 46, 47 REMARK 999 IN CHAIN B WERE DELETED. DBREF 2W99 A 1 271 UNP P24385 CCND1_HUMAN 1 271 DBREF 2W99 B 1 44 UNP P11802 CDK4_HUMAN 1 44 DBREF 2W99 B 48 303 UNP P11802 CDK4_HUMAN 48 303 DBREF 2W99 B 304 309 PDB 2W99 2W99 304 309 SEQADV 2W99 GLU B 43 UNP P11802 GLY 43 ENGINEERED MUTATION SEQADV 2W99 GLU B 44 UNP P11802 GLY 44 ENGINEERED MUTATION SEQADV 2W99 ALA B 172 UNP P11802 THR 172 ENGINEERED MUTATION SEQRES 1 A 271 MET GLU HIS GLN LEU LEU CYS CYS GLU VAL GLU THR ILE SEQRES 2 A 271 ARG ARG ALA TYR PRO ASP ALA ASN LEU LEU ASN ASP ARG SEQRES 3 A 271 VAL LEU ARG ALA MET LEU LYS ALA GLU GLU THR CYS ALA SEQRES 4 A 271 PRO SER VAL SER TYR PHE LYS CYS VAL GLN LYS GLU VAL SEQRES 5 A 271 LEU PRO SER MET ARG LYS ILE VAL ALA THR TRP MET LEU SEQRES 6 A 271 GLU VAL CYS GLU GLU GLN LYS CYS GLU GLU GLU VAL PHE SEQRES 7 A 271 PRO LEU ALA MET ASN TYR LEU ASP ARG PHE LEU SER LEU SEQRES 8 A 271 GLU PRO VAL LYS LYS SER ARG LEU GLN LEU LEU GLY ALA SEQRES 9 A 271 THR CYS MET PHE VAL ALA SER LYS MET LYS GLU THR ILE SEQRES 10 A 271 PRO LEU THR ALA GLU LYS LEU CYS ILE TYR THR ASP ASN SEQRES 11 A 271 SER ILE ARG PRO GLU GLU LEU LEU GLN MET GLU LEU LEU SEQRES 12 A 271 LEU VAL ASN LYS LEU LYS TRP ASN LEU ALA ALA MET THR SEQRES 13 A 271 PRO HIS ASP PHE ILE GLU HIS PHE LEU SER LYS MET PRO SEQRES 14 A 271 GLU ALA GLU GLU ASN LYS GLN ILE ILE ARG LYS HIS ALA SEQRES 15 A 271 GLN THR PHE VAL ALA LEU CYS ALA THR ASP VAL LYS PHE SEQRES 16 A 271 ILE SER ASN PRO PRO SER MET VAL ALA ALA GLY SER VAL SEQRES 17 A 271 VAL ALA ALA VAL GLN GLY LEU ASN LEU ARG SER PRO ASN SEQRES 18 A 271 ASN PHE LEU SER TYR TYR ARG LEU THR ARG PHE LEU SER SEQRES 19 A 271 ARG VAL ILE LYS CYS ASP PRO ASP CYS LEU ARG ALA CYS SEQRES 20 A 271 GLN GLU GLN ILE GLU ALA LEU LEU GLU SER SER LEU ARG SEQRES 21 A 271 GLN ALA GLN GLN ASN MET ASP PRO LYS ALA ALA SEQRES 1 B 306 MET ALA THR SER ARG TYR GLU PRO VAL ALA GLU ILE GLY SEQRES 2 B 306 VAL GLY ALA TYR GLY THR VAL TYR LYS ALA ARG ASP PRO SEQRES 3 B 306 HIS SER GLY HIS PHE VAL ALA LEU LYS SER VAL ARG VAL SEQRES 4 B 306 PRO ASN GLY GLU GLU GLY LEU PRO ILE SER THR VAL ARG SEQRES 5 B 306 GLU VAL ALA LEU LEU ARG ARG LEU GLU ALA PHE GLU HIS SEQRES 6 B 306 PRO ASN VAL VAL ARG LEU MET ASP VAL CYS ALA THR SER SEQRES 7 B 306 ARG THR ASP ARG GLU ILE LYS VAL THR LEU VAL PHE GLU SEQRES 8 B 306 HIS VAL ASP GLN ASP LEU ARG THR TYR LEU ASP LYS ALA SEQRES 9 B 306 PRO PRO PRO GLY LEU PRO ALA GLU THR ILE LYS ASP LEU SEQRES 10 B 306 MET ARG GLN PHE LEU ARG GLY LEU ASP PHE LEU HIS ALA SEQRES 11 B 306 ASN CYS ILE VAL HIS ARG ASP LEU LYS PRO GLU ASN ILE SEQRES 12 B 306 LEU VAL THR SER GLY GLY THR VAL LYS LEU ALA ASP PHE SEQRES 13 B 306 GLY LEU ALA ARG ILE TYR SER TYR GLN MET ALA LEU ALA SEQRES 14 B 306 PRO VAL VAL VAL THR LEU TRP TYR ARG ALA PRO GLU VAL SEQRES 15 B 306 LEU LEU GLN SER THR TYR ALA THR PRO VAL ASP MET TRP SEQRES 16 B 306 SER VAL GLY CYS ILE PHE ALA GLU MET PHE ARG ARG LYS SEQRES 17 B 306 PRO LEU PHE CYS GLY ASN SER GLU ALA ASP GLN LEU GLY SEQRES 18 B 306 LYS ILE PHE ASP LEU ILE GLY LEU PRO PRO GLU ASP ASP SEQRES 19 B 306 TRP PRO ARG ASP VAL SER LEU PRO ARG GLY ALA PHE PRO SEQRES 20 B 306 PRO ARG GLY PRO ARG PRO VAL GLN SER VAL VAL PRO GLU SEQRES 21 B 306 MET GLU GLU SER GLY ALA GLN LEU LEU LEU GLU MET LEU SEQRES 22 B 306 THR PHE ASN PRO HIS LYS ARG ILE SER ALA PHE ARG ALA SEQRES 23 B 306 LEU GLN HIS SER TYR LEU HIS LYS ASP GLU GLY ASN PRO SEQRES 24 B 306 GLU HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *126(H2 O) HELIX 1 1 LEU A 22 CYS A 38 1 17 HELIX 2 2 SER A 43 VAL A 48 1 6 HELIX 3 3 LEU A 53 GLN A 71 1 19 HELIX 4 4 GLU A 76 SER A 90 1 15 HELIX 5 5 LYS A 95 SER A 97 5 3 HELIX 6 6 ARG A 98 GLU A 115 1 18 HELIX 7 7 THR A 120 TYR A 127 1 8 HELIX 8 8 ARG A 133 LEU A 148 1 16 HELIX 9 9 THR A 156 MET A 168 1 13 HELIX 10 10 ALA A 171 THR A 191 1 21 HELIX 11 11 VAL A 193 ASN A 198 1 6 HELIX 12 12 PRO A 199 SER A 219 1 21 HELIX 13 13 ARG A 228 LYS A 238 1 11 HELIX 14 14 ASP A 240 ALA A 262 1 23 HELIX 15 15 PRO B 50 ARG B 62 1 13 HELIX 16 16 LEU B 100 LYS B 106 1 7 HELIX 17 17 ILE B 117 ASN B 134 1 18 HELIX 18 18 TYR B 165 LEU B 171 5 7 HELIX 19 19 THR B 193 MET B 207 1 15 HELIX 20 20 SER B 218 GLY B 231 1 14 HELIX 21 21 PRO B 256 VAL B 261 1 6 HELIX 22 22 GLU B 265 LEU B 276 1 12 HELIX 23 23 ARG B 288 HIS B 292 5 5 SHEET 1 BA 3 GLU B 7 PRO B 8 0 SHEET 2 BA 3 ALA B 23 ARG B 24 -1 O ARG B 24 N GLU B 7 SHEET 3 BA 3 PHE B 31 VAL B 32 -1 O VAL B 32 N ALA B 23 SHEET 1 BB 2 VAL B 14 GLY B 15 0 SHEET 2 BB 2 GLY B 18 THR B 19 -1 O GLY B 18 N GLY B 15 SHEET 1 BC 3 ARG B 38 VAL B 39 0 SHEET 2 BC 3 GLU B 86 PHE B 93 -1 O ILE B 87 N VAL B 39 SHEET 3 BC 3 LEU B 74 THR B 83 -1 O ASP B 76 N VAL B 92 SHEET 1 BD 2 GLN B 98 ASP B 99 0 SHEET 2 BD 2 LEU B 147 VAL B 148 -1 O VAL B 148 N GLN B 98 CISPEP 1 ALA B 2 THR B 3 0 -2.61 CISPEP 2 LEU B 112 PRO B 113 0 -5.37 CISPEP 3 PRO B 173 VAL B 174 0 -8.85 CISPEP 4 PHE B 208 ARG B 209 0 -7.60 CISPEP 5 GLU B 235 ASP B 236 0 11.58 CISPEP 6 ARG B 240 ASP B 241 0 7.71 CISPEP 7 PRO B 262 GLU B 263 0 -5.94 CRYST1 57.023 64.684 188.747 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017537 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015460 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005298 0.00000 TER 1961 ASP A 267 TER 4261 LEU B 295 HETATM 4262 O HOH A2001 33.383 47.405 32.485 1.00 83.08 O HETATM 4263 O HOH A2002 17.866 45.213 29.681 1.00 70.21 O HETATM 4264 O HOH A2003 15.994 41.993 36.633 1.00 46.46 O HETATM 4265 O HOH A2004 18.752 45.002 34.057 1.00 86.29 O HETATM 4266 O HOH A2005 16.096 44.408 27.618 1.00 76.87 O HETATM 4267 O HOH A2006 16.203 43.616 31.570 1.00 79.60 O HETATM 4268 O HOH A2007 16.166 44.378 34.039 1.00 61.36 O HETATM 4269 O HOH A2008 20.852 41.414 36.850 1.00 80.45 O HETATM 4270 O HOH A2009 15.048 41.343 32.331 1.00 96.80 O HETATM 4271 O HOH A2010 16.932 40.194 30.013 1.00 88.29 O HETATM 4272 O HOH A2011 4.483 49.459 36.945 1.00 59.17 O HETATM 4273 O HOH A2012 -8.404 39.241 36.225 1.00 69.27 O HETATM 4274 O HOH A2013 1.462 41.770 35.047 1.00 77.87 O HETATM 4275 O HOH A2014 1.673 41.761 42.199 1.00 54.93 O HETATM 4276 O HOH A2015 2.299 46.165 35.229 1.00 76.16 O HETATM 4277 O HOH A2016 1.605 48.319 37.673 1.00 95.01 O HETATM 4278 O HOH A2017 -6.204 40.533 37.497 1.00 76.72 O HETATM 4279 O HOH A2018 -6.821 42.159 33.558 1.00 61.51 O HETATM 4280 O HOH A2019 15.411 23.658 51.585 1.00 71.72 O HETATM 4281 O HOH A2020 -7.370 39.485 42.270 1.00 58.25 O HETATM 4282 O HOH A2021 -8.968 35.085 46.292 1.00 80.71 O HETATM 4283 O HOH A2022 3.491 35.896 49.869 1.00 61.03 O HETATM 4284 O HOH A2023 -5.317 32.858 52.280 1.00 44.10 O HETATM 4285 O HOH A2024 -0.881 33.127 54.157 1.00 54.76 O HETATM 4286 O HOH A2025 1.382 25.692 54.105 1.00 40.55 O HETATM 4287 O HOH A2026 13.592 11.677 46.283 1.00 76.69 O HETATM 4288 O HOH A2027 13.300 8.057 43.742 1.00 85.48 O HETATM 4289 O HOH A2028 16.781 8.711 39.350 1.00 56.95 O HETATM 4290 O HOH A2029 13.231 9.141 49.819 1.00 50.80 O HETATM 4291 O HOH A2030 14.229 14.498 57.469 1.00 75.63 O HETATM 4292 O HOH A2031 16.738 20.512 51.854 1.00 44.74 O HETATM 4293 O HOH A2032 -2.039 29.047 26.837 1.00 82.54 O HETATM 4294 O HOH A2033 24.296 26.165 46.282 1.00 40.29 O HETATM 4295 O HOH A2034 16.329 25.907 50.000 1.00 39.66 O HETATM 4296 O HOH A2035 15.793 31.082 42.083 1.00 40.17 O HETATM 4297 O HOH A2036 41.688 38.289 55.876 1.00 47.88 O HETATM 4298 O HOH A2037 10.545 34.779 41.980 1.00 40.29 O HETATM 4299 O HOH A2038 10.275 33.510 31.773 1.00 38.25 O HETATM 4300 O HOH A2039 2.724 40.799 51.717 1.00 42.02 O HETATM 4301 O HOH A2040 -5.082 34.081 28.964 1.00 55.62 O HETATM 4302 O HOH A2041 -6.095 33.425 40.272 1.00 76.53 O HETATM 4303 O HOH A2042 -10.546 27.186 41.848 1.00 65.94 O HETATM 4304 O HOH A2043 -7.974 20.897 42.746 1.00 54.66 O HETATM 4305 O HOH A2044 -4.218 21.691 43.569 1.00 52.43 O HETATM 4306 O HOH A2045 -11.534 22.501 45.395 1.00 80.96 O HETATM 4307 O HOH A2046 -7.220 20.708 39.341 1.00 81.19 O HETATM 4308 O HOH A2047 -4.031 24.510 45.902 1.00 46.06 O HETATM 4309 O HOH A2048 -0.411 23.443 49.340 1.00 60.08 O HETATM 4310 O HOH A2049 -4.768 21.512 45.979 1.00 86.32 O HETATM 4311 O HOH A2050 28.719 55.607 57.373 1.00 85.54 O HETATM 4312 O HOH A2051 21.754 23.463 36.100 1.00 68.31 O HETATM 4313 O HOH A2052 15.074 14.038 46.987 1.00 41.94 O HETATM 4314 O HOH A2053 19.293 12.996 44.889 1.00 52.14 O HETATM 4315 O HOH A2054 14.465 9.695 41.203 1.00 64.87 O HETATM 4316 O HOH A2055 11.060 12.606 38.472 1.00 57.20 O HETATM 4317 O HOH A2056 11.580 10.638 44.731 1.00 74.93 O HETATM 4318 O HOH A2057 8.079 6.816 43.836 1.00 61.84 O HETATM 4319 O HOH A2058 6.122 5.486 42.247 1.00 67.88 O HETATM 4320 O HOH A2059 -0.815 18.227 52.352 1.00 92.06 O HETATM 4321 O HOH A2060 -6.058 19.317 41.341 1.00 40.73 O HETATM 4322 O HOH A2061 -1.652 32.618 27.271 1.00 83.87 O HETATM 4323 O HOH A2062 5.286 31.471 27.152 1.00 59.65 O HETATM 4324 O HOH A2063 11.765 32.394 29.743 1.00 63.66 O HETATM 4325 O HOH A2064 16.944 33.750 37.793 1.00 40.38 O HETATM 4326 O HOH A2065 17.701 27.935 50.712 1.00 87.22 O HETATM 4327 O HOH A2066 32.305 29.485 47.576 1.00 30.45 O HETATM 4328 O HOH A2067 37.523 39.542 46.322 1.00 71.03 O HETATM 4329 O HOH A2068 38.173 33.663 49.722 1.00 48.84 O HETATM 4330 O HOH A2069 40.057 36.228 50.165 1.00 77.17 O HETATM 4331 O HOH A2070 38.410 38.311 57.415 1.00 55.18 O HETATM 4332 O HOH A2071 40.200 28.412 55.308 1.00 49.26 O HETATM 4333 O HOH A2072 34.712 29.654 48.831 1.00 82.41 O HETATM 4334 O HOH A2073 37.743 31.499 47.909 1.00 73.73 O HETATM 4335 O HOH A2074 33.601 23.006 51.875 1.00 58.19 O HETATM 4336 O HOH A2075 21.296 25.624 56.566 1.00 45.44 O HETATM 4337 O HOH A2076 20.619 29.321 61.131 1.00 71.85 O HETATM 4338 O HOH A2077 22.025 27.688 62.280 1.00 69.54 O HETATM 4339 O HOH A2078 24.515 28.281 48.887 1.00 62.34 O HETATM 4340 O HOH A2079 19.174 31.673 60.823 1.00 56.98 O HETATM 4341 O HOH A2080 4.601 38.942 51.167 1.00 53.00 O HETATM 4342 O HOH A2081 14.192 45.430 41.344 1.00 61.37 O HETATM 4343 O HOH A2082 6.390 41.833 45.101 1.00 57.84 O HETATM 4344 O HOH A2083 13.227 38.317 40.370 1.00 36.14 O HETATM 4345 O HOH A2084 15.550 45.941 47.162 1.00 42.58 O HETATM 4346 O HOH A2085 21.362 43.152 40.196 1.00 78.09 O HETATM 4347 O HOH A2086 27.537 44.848 62.186 1.00 83.61 O HETATM 4348 O HOH A2087 28.778 31.096 69.341 1.00116.16 O HETATM 4349 O HOH A2088 36.712 44.497 56.607 1.00 72.40 O HETATM 4350 O HOH A2089 27.789 44.679 57.568 1.00 54.51 O HETATM 4351 O HOH A2090 33.939 54.089 55.690 1.00 53.23 O HETATM 4352 O HOH A2091 33.824 51.989 54.154 1.00 87.85 O HETATM 4353 O HOH A2092 31.165 54.826 55.906 1.00 84.10 O HETATM 4354 O HOH A2093 34.250 52.916 51.990 1.00 58.72 O HETATM 4355 O HOH A2094 27.327 50.597 45.297 1.00 59.34 O HETATM 4356 O HOH A2095 32.891 44.885 35.742 1.00 88.28 O HETATM 4357 O HOH A2096 23.847 54.620 47.217 1.00 56.99 O HETATM 4358 O HOH A2097 18.433 56.402 44.525 1.00 76.01 O HETATM 4359 O HOH A2098 10.098 42.776 54.943 1.00 56.48 O HETATM 4360 O HOH A2099 9.972 43.679 48.624 1.00 68.81 O HETATM 4361 O HOH A2100 13.376 33.519 64.854 1.00 57.58 O HETATM 4362 O HOH B2001 6.108 26.326 19.921 1.00 85.59 O HETATM 4363 O HOH B2002 6.745 27.855 24.256 1.00 61.44 O HETATM 4364 O HOH B2003 5.257 42.148 13.105 1.00 83.97 O HETATM 4365 O HOH B2004 2.987 6.327 30.941 1.00 72.06 O HETATM 4366 O HOH B2005 3.070 6.607 39.265 1.00 71.46 O HETATM 4367 O HOH B2006 15.133 11.918 20.935 1.00 81.36 O HETATM 4368 O HOH B2007 3.423 13.541 29.487 1.00 52.68 O HETATM 4369 O HOH B2008 1.893 9.288 31.151 1.00 76.05 O HETATM 4370 O HOH B2009 7.725 4.023 36.961 1.00 68.28 O HETATM 4371 O HOH B2010 6.255 0.411 35.680 1.00 69.82 O HETATM 4372 O HOH B2011 6.233 8.266 40.025 1.00 53.27 O HETATM 4373 O HOH B2012 10.368 9.960 31.432 1.00 60.93 O HETATM 4374 O HOH B2013 17.872 27.822 30.760 1.00 67.93 O HETATM 4375 O HOH B2014 25.760 24.268 35.029 1.00 84.96 O HETATM 4376 O HOH B2015 -2.011 16.303 21.395 1.00 70.80 O HETATM 4377 O HOH B2016 -0.341 11.284 27.091 1.00 73.46 O HETATM 4378 O HOH B2017 6.351 15.221 12.378 1.00 82.01 O HETATM 4379 O HOH B2018 16.618 35.701 9.303 1.00 64.33 O HETATM 4380 O HOH B2019 44.723 29.536 -1.334 1.00 77.89 O HETATM 4381 O HOH B2020 47.280 35.055 18.327 1.00101.73 O HETATM 4382 O HOH B2021 31.991 31.881 28.929 1.00 86.67 O HETATM 4383 O HOH B2022 26.094 18.255 18.432 1.00 58.43 O HETATM 4384 O HOH B2023 25.347 38.949 9.198 1.00 92.95 O HETATM 4385 O HOH B2024 27.530 39.916 10.808 1.00 87.79 O HETATM 4386 O HOH B2025 43.244 16.981 0.315 1.00 95.65 O HETATM 4387 O HOH B2026 49.232 -5.996 6.734 1.00 66.23 O MASTER 363 0 0 23 10 0 0 6 4385 2 0 45 END