data_2W9G # _entry.id 2W9G # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2W9G PDBE EBI-38636 WWPDB D_1290038636 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2W9H _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'WILD-TYPE STAPHYLOCOCCUS AUREUS DHFR IN COMPLEX WITH TRIMETHOPRIM' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2W9G _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2009-01-23 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Soutter, H.H.' 1 'Miller, J.R.' 2 # _citation.id primary _citation.title ;Structural Comparison of Chromosomal and Exogenous Dihydrofolate Reductase from Staphylococcus Aureus in Complex with the Potent Inhibitor Trimethoprim. ; _citation.journal_abbrev Proteins _citation.journal_volume 76 _citation.page_first 706 _citation.page_last ? _citation.year 2009 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19280600 _citation.pdbx_database_id_DOI 10.1002/PROT.22383 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Heaslet, H.' 1 primary 'Harris, M.' 2 primary 'Fahnoe, K.' 3 primary 'Sarver, R.' 4 primary 'Putz, H.' 5 primary 'Chang, J.' 6 primary 'Subramanian, C.' 7 primary 'Barreiro, G.' 8 primary 'Miller, J.R.' 9 # _cell.entry_id 2W9G _cell.length_a 79.287 _cell.length_b 79.287 _cell.length_c 106.254 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2W9G _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DIHYDROFOLATE REDUCTASE' 18275.934 1 1.5.1.3 ? ? ? 2 non-polymer syn TRIMETHOPRIM 290.318 1 ? ? ? ? 3 non-polymer syn 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 745.421 1 ? ? ? ? 4 water nat water 18.015 86 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name DHFR # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MTLSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTGHTLVMGRKTFESIGKPLPNRRNVVLTSDTSFNVEGVDVIHSI EDIYQLPGHVFIFGGQTLFEEMIDKVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIRKK ; _entity_poly.pdbx_seq_one_letter_code_can ;MTLSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTGHTLVMGRKTFESIGKPLPNRRNVVLTSDTSFNVEGVDVIHSI EDIYQLPGHVFIFGGQTLFEEMIDKVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIRKK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 THR n 1 3 LEU n 1 4 SER n 1 5 ILE n 1 6 LEU n 1 7 VAL n 1 8 ALA n 1 9 HIS n 1 10 ASP n 1 11 LEU n 1 12 GLN n 1 13 ARG n 1 14 VAL n 1 15 ILE n 1 16 GLY n 1 17 PHE n 1 18 GLU n 1 19 ASN n 1 20 GLN n 1 21 LEU n 1 22 PRO n 1 23 TRP n 1 24 HIS n 1 25 LEU n 1 26 PRO n 1 27 ASN n 1 28 ASP n 1 29 LEU n 1 30 LYS n 1 31 HIS n 1 32 VAL n 1 33 LYS n 1 34 LYS n 1 35 LEU n 1 36 SER n 1 37 THR n 1 38 GLY n 1 39 HIS n 1 40 THR n 1 41 LEU n 1 42 VAL n 1 43 MET n 1 44 GLY n 1 45 ARG n 1 46 LYS n 1 47 THR n 1 48 PHE n 1 49 GLU n 1 50 SER n 1 51 ILE n 1 52 GLY n 1 53 LYS n 1 54 PRO n 1 55 LEU n 1 56 PRO n 1 57 ASN n 1 58 ARG n 1 59 ARG n 1 60 ASN n 1 61 VAL n 1 62 VAL n 1 63 LEU n 1 64 THR n 1 65 SER n 1 66 ASP n 1 67 THR n 1 68 SER n 1 69 PHE n 1 70 ASN n 1 71 VAL n 1 72 GLU n 1 73 GLY n 1 74 VAL n 1 75 ASP n 1 76 VAL n 1 77 ILE n 1 78 HIS n 1 79 SER n 1 80 ILE n 1 81 GLU n 1 82 ASP n 1 83 ILE n 1 84 TYR n 1 85 GLN n 1 86 LEU n 1 87 PRO n 1 88 GLY n 1 89 HIS n 1 90 VAL n 1 91 PHE n 1 92 ILE n 1 93 PHE n 1 94 GLY n 1 95 GLY n 1 96 GLN n 1 97 THR n 1 98 LEU n 1 99 PHE n 1 100 GLU n 1 101 GLU n 1 102 MET n 1 103 ILE n 1 104 ASP n 1 105 LYS n 1 106 VAL n 1 107 ASP n 1 108 ASP n 1 109 MET n 1 110 TYR n 1 111 ILE n 1 112 THR n 1 113 VAL n 1 114 ILE n 1 115 GLU n 1 116 GLY n 1 117 LYS n 1 118 PHE n 1 119 ARG n 1 120 GLY n 1 121 ASP n 1 122 THR n 1 123 PHE n 1 124 PHE n 1 125 PRO n 1 126 PRO n 1 127 TYR n 1 128 THR n 1 129 PHE n 1 130 GLU n 1 131 ASP n 1 132 TRP n 1 133 GLU n 1 134 VAL n 1 135 ALA n 1 136 SER n 1 137 SER n 1 138 VAL n 1 139 GLU n 1 140 GLY n 1 141 LYS n 1 142 LEU n 1 143 ASP n 1 144 GLU n 1 145 LYS n 1 146 ASN n 1 147 THR n 1 148 ILE n 1 149 PRO n 1 150 HIS n 1 151 THR n 1 152 PHE n 1 153 LEU n 1 154 HIS n 1 155 LEU n 1 156 ILE n 1 157 ARG n 1 158 LYS n 1 159 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain MU-50 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'STAPHYLOCOCCUS AUREUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1280 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector PDEST _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PDEST14 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DYR_STAAU _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P0A017 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2W9G _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 159 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P0A017 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 159 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 0 _struct_ref_seq.pdbx_auth_seq_align_end 158 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NDP non-polymer . 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' ? 'C21 H30 N7 O17 P3' 745.421 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TOP non-polymer . TRIMETHOPRIM ? 'C14 H18 N4 O3' 290.318 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2W9G _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.38 _exptl_crystal.density_percent_sol 47.98 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.4 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'BUFFER: 30 MM CITRIC ACID / 40 MM BIS-TRIS PROPANE PH6.4, 13.3% PEG3350, 16.7% PEG6000' # _diffrn.id 1 _diffrn.ambient_temp 273 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2007-06-20 _diffrn_detector.details SI # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator SI _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 17-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 17-BM _diffrn_source.pdbx_wavelength 1 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2W9G _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 1.95 _reflns.number_obs 54341 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 33.00 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.7 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.95 _reflns_shell.d_res_low 2.02 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.36 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.20 _reflns_shell.pdbx_redundancy 5.7 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2W9G _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 14048 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 68.68 _refine.ls_d_res_high 1.95 _refine.ls_percent_reflns_obs 98.5 _refine.ls_R_factor_obs 0.214 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.211 _refine.ls_R_factor_R_free 0.287 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 745 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.948 _refine.correlation_coeff_Fo_to_Fc_free 0.896 _refine.B_iso_mean 25.19 _refine.aniso_B[1][1] -0.45000 _refine.aniso_B[2][2] -0.45000 _refine.aniso_B[3][3] 0.67000 _refine.aniso_B[1][2] -0.22000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.175 _refine.pdbx_overall_ESU_R_Free 0.184 _refine.overall_SU_ML 0.125 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 4.401 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1273 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 69 _refine_hist.number_atoms_solvent 86 _refine_hist.number_atoms_total 1428 _refine_hist.d_res_high 1.95 _refine_hist.d_res_low 68.68 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.020 0.022 ? 1399 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.984 2.009 ? 1911 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 14.141 5.000 ? 160 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.770 24.375 ? 64 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.519 15.000 ? 229 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.422 15.000 ? 6 'X-RAY DIFFRACTION' ? r_chiral_restr 0.147 0.200 ? 209 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.020 ? 1053 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.225 0.200 ? 601 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.327 0.200 ? 932 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.205 0.200 ? 106 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.365 0.200 ? 31 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.197 0.200 ? 7 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.472 1.500 ? 816 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 3.323 2.000 ? 1304 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 4.823 3.000 ? 664 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 6.619 4.500 ? 607 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.95 _refine_ls_shell.d_res_low 2.00 _refine_ls_shell.number_reflns_R_work 1003 _refine_ls_shell.R_factor_R_work 0.3050 _refine_ls_shell.percent_reflns_obs 98.04 _refine_ls_shell.R_factor_R_free 0.3460 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 46 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2W9G _struct.title 'Wild-type Staphylococcus aureus DHFR in complex with NADPH and trimethoprim' _struct.pdbx_descriptor 'DIHYDROFOLATE REDUCTASE (E.C.1.5.1.3)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2W9G _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text 'OXIDOREDUCTASE, ONE-CARBON METABOLISM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 25 ? THR A 37 ? LEU A 24 THR A 36 1 ? 13 HELX_P HELX_P2 2 ARG A 45 ? GLY A 52 ? ARG A 44 GLY A 51 1 ? 8 HELX_P HELX_P3 3 SER A 79 ? LEU A 86 ? SER A 78 LEU A 85 5 ? 8 HELX_P HELX_P4 4 GLY A 95 ? ILE A 103 ? GLY A 94 ILE A 102 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 94 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 93 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 GLY _struct_mon_prot_cis.pdbx_label_seq_id_2 95 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 GLY _struct_mon_prot_cis.pdbx_auth_seq_id_2 94 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 14.88 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 8 ? AB ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel AA 2 3 ? parallel AA 3 4 ? parallel AA 4 5 ? parallel AA 5 6 ? parallel AA 6 7 ? anti-parallel AA 7 8 ? anti-parallel AB 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ASP A 75 ? ILE A 77 ? ASP A 74 ILE A 76 AA 2 ARG A 59 ? LEU A 63 ? ARG A 58 LEU A 62 AA 3 THR A 40 ? GLY A 44 ? THR A 39 GLY A 43 AA 4 VAL A 90 ? GLY A 94 ? VAL A 89 GLY A 93 AA 5 LEU A 3 ? HIS A 9 ? LEU A 2 HIS A 8 AA 6 ASP A 108 ? ILE A 114 ? ASP A 107 ILE A 113 AA 7 HIS A 150 ? ARG A 157 ? HIS A 149 ARG A 156 AA 8 TRP A 132 ? GLU A 139 ? TRP A 131 GLU A 138 AB 1 VAL A 14 ? GLY A 16 ? VAL A 13 GLY A 15 AB 2 THR A 122 ? PHE A 123 ? THR A 121 PHE A 122 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ASP A 75 ? N ASP A 74 O ASN A 60 ? O ASN A 59 AA 2 3 N VAL A 61 ? N VAL A 60 O LEU A 41 ? O LEU A 40 AA 3 4 N VAL A 42 ? N VAL A 41 O PHE A 91 ? O PHE A 90 AA 4 5 N ILE A 92 ? N ILE A 91 O SER A 4 ? O SER A 3 AA 5 6 N ILE A 5 ? N ILE A 4 O ASP A 108 ? O ASP A 107 AA 6 7 N VAL A 113 ? N VAL A 112 O THR A 151 ? O THR A 150 AA 7 8 N ILE A 156 ? N ILE A 155 O GLU A 133 ? O GLU A 132 AB 1 2 N ILE A 15 ? N ILE A 14 O THR A 122 ? O THR A 121 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 11 'BINDING SITE FOR RESIDUE TOP A 1159' AC2 Software ? ? ? ? 25 'BINDING SITE FOR RESIDUE NDP A 1160' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 LEU A 6 ? LEU A 5 . ? 1_555 ? 2 AC1 11 VAL A 7 ? VAL A 6 . ? 1_555 ? 3 AC1 11 ALA A 8 ? ALA A 7 . ? 1_555 ? 4 AC1 11 ASP A 28 ? ASP A 27 . ? 1_555 ? 5 AC1 11 LEU A 29 ? LEU A 28 . ? 1_555 ? 6 AC1 11 VAL A 32 ? VAL A 31 . ? 1_555 ? 7 AC1 11 SER A 50 ? SER A 49 . ? 1_555 ? 8 AC1 11 ILE A 51 ? ILE A 50 . ? 1_555 ? 9 AC1 11 PHE A 93 ? PHE A 92 . ? 1_555 ? 10 AC1 11 NDP C . ? NDP A 1160 . ? 1_555 ? 11 AC1 11 HOH D . ? HOH A 2030 . ? 1_555 ? 12 AC2 25 VAL A 7 ? VAL A 6 . ? 1_555 ? 13 AC2 25 ALA A 8 ? ALA A 7 . ? 1_555 ? 14 AC2 25 ILE A 15 ? ILE A 14 . ? 1_555 ? 15 AC2 25 GLY A 16 ? GLY A 15 . ? 1_555 ? 16 AC2 25 ASN A 19 ? ASN A 18 . ? 1_555 ? 17 AC2 25 GLN A 20 ? GLN A 19 . ? 1_555 ? 18 AC2 25 LEU A 21 ? LEU A 20 . ? 1_555 ? 19 AC2 25 GLY A 44 ? GLY A 43 . ? 1_555 ? 20 AC2 25 ARG A 45 ? ARG A 44 . ? 1_555 ? 21 AC2 25 LYS A 46 ? LYS A 45 . ? 1_555 ? 22 AC2 25 THR A 47 ? THR A 46 . ? 1_555 ? 23 AC2 25 LEU A 63 ? LEU A 62 . ? 1_555 ? 24 AC2 25 THR A 64 ? THR A 63 . ? 1_555 ? 25 AC2 25 SER A 65 ? SER A 64 . ? 1_555 ? 26 AC2 25 PHE A 93 ? PHE A 92 . ? 1_555 ? 27 AC2 25 GLY A 94 ? GLY A 93 . ? 1_555 ? 28 AC2 25 GLY A 95 ? GLY A 94 . ? 1_555 ? 29 AC2 25 GLN A 96 ? GLN A 95 . ? 1_555 ? 30 AC2 25 THR A 97 ? THR A 96 . ? 1_555 ? 31 AC2 25 GLU A 101 ? GLU A 100 . ? 1_555 ? 32 AC2 25 THR A 122 ? THR A 121 . ? 1_555 ? 33 AC2 25 TOP B . ? TOP A 1159 . ? 1_555 ? 34 AC2 25 HOH D . ? HOH A 2011 . ? 1_555 ? 35 AC2 25 HOH D . ? HOH A 2059 . ? 1_555 ? 36 AC2 25 HOH D . ? HOH A 2085 . ? 1_555 ? # _database_PDB_matrix.entry_id 2W9G _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2W9G _atom_sites.fract_transf_matrix[1][1] 0.012612 _atom_sites.fract_transf_matrix[1][2] 0.007282 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014564 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009411 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 ? ? ? A . n A 1 2 THR 2 1 1 THR THR A . n A 1 3 LEU 3 2 2 LEU LEU A . n A 1 4 SER 4 3 3 SER SER A . n A 1 5 ILE 5 4 4 ILE ILE A . n A 1 6 LEU 6 5 5 LEU LEU A . n A 1 7 VAL 7 6 6 VAL VAL A . n A 1 8 ALA 8 7 7 ALA ALA A . n A 1 9 HIS 9 8 8 HIS HIS A . n A 1 10 ASP 10 9 9 ASP ASP A . n A 1 11 LEU 11 10 10 LEU LEU A . n A 1 12 GLN 12 11 11 GLN GLN A . n A 1 13 ARG 13 12 12 ARG ARG A . n A 1 14 VAL 14 13 13 VAL VAL A . n A 1 15 ILE 15 14 14 ILE ILE A . n A 1 16 GLY 16 15 15 GLY GLY A . n A 1 17 PHE 17 16 16 PHE PHE A . n A 1 18 GLU 18 17 17 GLU GLU A . n A 1 19 ASN 19 18 18 ASN ASN A . n A 1 20 GLN 20 19 19 GLN GLN A . n A 1 21 LEU 21 20 20 LEU LEU A . n A 1 22 PRO 22 21 21 PRO PRO A . n A 1 23 TRP 23 22 22 TRP TRP A . n A 1 24 HIS 24 23 23 HIS HIS A . n A 1 25 LEU 25 24 24 LEU LEU A . n A 1 26 PRO 26 25 25 PRO PRO A . n A 1 27 ASN 27 26 26 ASN ASN A . n A 1 28 ASP 28 27 27 ASP ASP A . n A 1 29 LEU 29 28 28 LEU LEU A . n A 1 30 LYS 30 29 29 LYS LYS A . n A 1 31 HIS 31 30 30 HIS HIS A . n A 1 32 VAL 32 31 31 VAL VAL A . n A 1 33 LYS 33 32 32 LYS LYS A . n A 1 34 LYS 34 33 33 LYS LYS A . n A 1 35 LEU 35 34 34 LEU LEU A . n A 1 36 SER 36 35 35 SER SER A . n A 1 37 THR 37 36 36 THR THR A . n A 1 38 GLY 38 37 37 GLY GLY A . n A 1 39 HIS 39 38 38 HIS HIS A . n A 1 40 THR 40 39 39 THR THR A . n A 1 41 LEU 41 40 40 LEU LEU A . n A 1 42 VAL 42 41 41 VAL VAL A . n A 1 43 MET 43 42 42 MET MET A . n A 1 44 GLY 44 43 43 GLY GLY A . n A 1 45 ARG 45 44 44 ARG ARG A . n A 1 46 LYS 46 45 45 LYS LYS A . n A 1 47 THR 47 46 46 THR THR A . n A 1 48 PHE 48 47 47 PHE PHE A . n A 1 49 GLU 49 48 48 GLU GLU A . n A 1 50 SER 50 49 49 SER SER A . n A 1 51 ILE 51 50 50 ILE ILE A . n A 1 52 GLY 52 51 51 GLY GLY A . n A 1 53 LYS 53 52 52 LYS LYS A . n A 1 54 PRO 54 53 53 PRO PRO A . n A 1 55 LEU 55 54 54 LEU LEU A . n A 1 56 PRO 56 55 55 PRO PRO A . n A 1 57 ASN 57 56 56 ASN ASN A . n A 1 58 ARG 58 57 57 ARG ARG A . n A 1 59 ARG 59 58 58 ARG ARG A . n A 1 60 ASN 60 59 59 ASN ASN A . n A 1 61 VAL 61 60 60 VAL VAL A . n A 1 62 VAL 62 61 61 VAL VAL A . n A 1 63 LEU 63 62 62 LEU LEU A . n A 1 64 THR 64 63 63 THR THR A . n A 1 65 SER 65 64 64 SER SER A . n A 1 66 ASP 66 65 65 ASP ASP A . n A 1 67 THR 67 66 66 THR THR A . n A 1 68 SER 68 67 67 SER SER A . n A 1 69 PHE 69 68 68 PHE PHE A . n A 1 70 ASN 70 69 69 ASN ASN A . n A 1 71 VAL 71 70 70 VAL VAL A . n A 1 72 GLU 72 71 71 GLU GLU A . n A 1 73 GLY 73 72 72 GLY GLY A . n A 1 74 VAL 74 73 73 VAL VAL A . n A 1 75 ASP 75 74 74 ASP ASP A . n A 1 76 VAL 76 75 75 VAL VAL A . n A 1 77 ILE 77 76 76 ILE ILE A . n A 1 78 HIS 78 77 77 HIS HIS A . n A 1 79 SER 79 78 78 SER SER A . n A 1 80 ILE 80 79 79 ILE ILE A . n A 1 81 GLU 81 80 80 GLU GLU A . n A 1 82 ASP 82 81 81 ASP ASP A . n A 1 83 ILE 83 82 82 ILE ILE A . n A 1 84 TYR 84 83 83 TYR TYR A . n A 1 85 GLN 85 84 84 GLN GLN A . n A 1 86 LEU 86 85 85 LEU LEU A . n A 1 87 PRO 87 86 86 PRO PRO A . n A 1 88 GLY 88 87 87 GLY GLY A . n A 1 89 HIS 89 88 88 HIS HIS A . n A 1 90 VAL 90 89 89 VAL VAL A . n A 1 91 PHE 91 90 90 PHE PHE A . n A 1 92 ILE 92 91 91 ILE ILE A . n A 1 93 PHE 93 92 92 PHE PHE A . n A 1 94 GLY 94 93 93 GLY GLY A . n A 1 95 GLY 95 94 94 GLY GLY A . n A 1 96 GLN 96 95 95 GLN GLN A . n A 1 97 THR 97 96 96 THR THR A . n A 1 98 LEU 98 97 97 LEU LEU A . n A 1 99 PHE 99 98 98 PHE PHE A . n A 1 100 GLU 100 99 99 GLU GLU A . n A 1 101 GLU 101 100 100 GLU GLU A . n A 1 102 MET 102 101 101 MET MET A . n A 1 103 ILE 103 102 102 ILE ILE A . n A 1 104 ASP 104 103 103 ASP ASP A . n A 1 105 LYS 105 104 104 LYS LYS A . n A 1 106 VAL 106 105 105 VAL VAL A . n A 1 107 ASP 107 106 106 ASP ASP A . n A 1 108 ASP 108 107 107 ASP ASP A . n A 1 109 MET 109 108 108 MET MET A . n A 1 110 TYR 110 109 109 TYR TYR A . n A 1 111 ILE 111 110 110 ILE ILE A . n A 1 112 THR 112 111 111 THR THR A . n A 1 113 VAL 113 112 112 VAL VAL A . n A 1 114 ILE 114 113 113 ILE ILE A . n A 1 115 GLU 115 114 114 GLU GLU A . n A 1 116 GLY 116 115 115 GLY GLY A . n A 1 117 LYS 117 116 116 LYS LYS A . n A 1 118 PHE 118 117 117 PHE PHE A . n A 1 119 ARG 119 118 118 ARG ARG A . n A 1 120 GLY 120 119 119 GLY GLY A . n A 1 121 ASP 121 120 120 ASP ASP A . n A 1 122 THR 122 121 121 THR THR A . n A 1 123 PHE 123 122 122 PHE PHE A . n A 1 124 PHE 124 123 123 PHE PHE A . n A 1 125 PRO 125 124 124 PRO PRO A . n A 1 126 PRO 126 125 125 PRO PRO A . n A 1 127 TYR 127 126 126 TYR TYR A . n A 1 128 THR 128 127 127 THR THR A . n A 1 129 PHE 129 128 128 PHE PHE A . n A 1 130 GLU 130 129 129 GLU GLU A . n A 1 131 ASP 131 130 130 ASP ASP A . n A 1 132 TRP 132 131 131 TRP TRP A . n A 1 133 GLU 133 132 132 GLU GLU A . n A 1 134 VAL 134 133 133 VAL VAL A . n A 1 135 ALA 135 134 134 ALA ALA A . n A 1 136 SER 136 135 135 SER SER A . n A 1 137 SER 137 136 136 SER SER A . n A 1 138 VAL 138 137 137 VAL VAL A . n A 1 139 GLU 139 138 138 GLU GLU A . n A 1 140 GLY 140 139 139 GLY GLY A . n A 1 141 LYS 141 140 140 LYS LYS A . n A 1 142 LEU 142 141 141 LEU LEU A . n A 1 143 ASP 143 142 142 ASP ASP A . n A 1 144 GLU 144 143 143 GLU GLU A . n A 1 145 LYS 145 144 144 LYS LYS A . n A 1 146 ASN 146 145 145 ASN ASN A . n A 1 147 THR 147 146 146 THR THR A . n A 1 148 ILE 148 147 147 ILE ILE A . n A 1 149 PRO 149 148 148 PRO PRO A . n A 1 150 HIS 150 149 149 HIS HIS A . n A 1 151 THR 151 150 150 THR THR A . n A 1 152 PHE 152 151 151 PHE PHE A . n A 1 153 LEU 153 152 152 LEU LEU A . n A 1 154 HIS 154 153 153 HIS HIS A . n A 1 155 LEU 155 154 154 LEU LEU A . n A 1 156 ILE 156 155 155 ILE ILE A . n A 1 157 ARG 157 156 156 ARG ARG A . n A 1 158 LYS 158 157 157 LYS LYS A . n A 1 159 LYS 159 158 158 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TOP 1 1159 1159 TOP TOP A . C 3 NDP 1 1160 1160 NDP NDP A . D 4 HOH 1 2001 2001 HOH HOH A . D 4 HOH 2 2002 2002 HOH HOH A . D 4 HOH 3 2003 2003 HOH HOH A . D 4 HOH 4 2004 2004 HOH HOH A . D 4 HOH 5 2005 2005 HOH HOH A . D 4 HOH 6 2006 2006 HOH HOH A . D 4 HOH 7 2007 2007 HOH HOH A . D 4 HOH 8 2008 2008 HOH HOH A . D 4 HOH 9 2009 2009 HOH HOH A . D 4 HOH 10 2010 2010 HOH HOH A . D 4 HOH 11 2011 2011 HOH HOH A . D 4 HOH 12 2012 2012 HOH HOH A . D 4 HOH 13 2013 2013 HOH HOH A . D 4 HOH 14 2014 2014 HOH HOH A . D 4 HOH 15 2015 2015 HOH HOH A . D 4 HOH 16 2016 2016 HOH HOH A . D 4 HOH 17 2017 2017 HOH HOH A . D 4 HOH 18 2018 2018 HOH HOH A . D 4 HOH 19 2019 2019 HOH HOH A . D 4 HOH 20 2020 2020 HOH HOH A . D 4 HOH 21 2021 2021 HOH HOH A . D 4 HOH 22 2022 2022 HOH HOH A . D 4 HOH 23 2023 2023 HOH HOH A . D 4 HOH 24 2024 2024 HOH HOH A . D 4 HOH 25 2025 2025 HOH HOH A . D 4 HOH 26 2026 2026 HOH HOH A . D 4 HOH 27 2027 2027 HOH HOH A . D 4 HOH 28 2028 2028 HOH HOH A . D 4 HOH 29 2029 2029 HOH HOH A . D 4 HOH 30 2030 2030 HOH HOH A . D 4 HOH 31 2031 2031 HOH HOH A . D 4 HOH 32 2032 2032 HOH HOH A . D 4 HOH 33 2033 2033 HOH HOH A . D 4 HOH 34 2034 2034 HOH HOH A . D 4 HOH 35 2035 2035 HOH HOH A . D 4 HOH 36 2036 2036 HOH HOH A . D 4 HOH 37 2037 2037 HOH HOH A . D 4 HOH 38 2038 2038 HOH HOH A . D 4 HOH 39 2039 2039 HOH HOH A . D 4 HOH 40 2040 2040 HOH HOH A . D 4 HOH 41 2041 2041 HOH HOH A . D 4 HOH 42 2042 2042 HOH HOH A . D 4 HOH 43 2043 2043 HOH HOH A . D 4 HOH 44 2044 2044 HOH HOH A . D 4 HOH 45 2045 2045 HOH HOH A . D 4 HOH 46 2046 2046 HOH HOH A . D 4 HOH 47 2047 2047 HOH HOH A . D 4 HOH 48 2048 2048 HOH HOH A . D 4 HOH 49 2049 2049 HOH HOH A . D 4 HOH 50 2050 2050 HOH HOH A . D 4 HOH 51 2051 2051 HOH HOH A . D 4 HOH 52 2052 2052 HOH HOH A . D 4 HOH 53 2053 2053 HOH HOH A . D 4 HOH 54 2054 2054 HOH HOH A . D 4 HOH 55 2055 2055 HOH HOH A . D 4 HOH 56 2056 2056 HOH HOH A . D 4 HOH 57 2057 2057 HOH HOH A . D 4 HOH 58 2058 2058 HOH HOH A . D 4 HOH 59 2059 2059 HOH HOH A . D 4 HOH 60 2060 2060 HOH HOH A . D 4 HOH 61 2061 2061 HOH HOH A . D 4 HOH 62 2062 2062 HOH HOH A . D 4 HOH 63 2063 2063 HOH HOH A . D 4 HOH 64 2064 2064 HOH HOH A . D 4 HOH 65 2065 2065 HOH HOH A . D 4 HOH 66 2066 2066 HOH HOH A . D 4 HOH 67 2067 2067 HOH HOH A . D 4 HOH 68 2068 2068 HOH HOH A . D 4 HOH 69 2069 2069 HOH HOH A . D 4 HOH 70 2070 2070 HOH HOH A . D 4 HOH 71 2071 2071 HOH HOH A . D 4 HOH 72 2072 2072 HOH HOH A . D 4 HOH 73 2073 2073 HOH HOH A . D 4 HOH 74 2074 2074 HOH HOH A . D 4 HOH 75 2075 2075 HOH HOH A . D 4 HOH 76 2076 2076 HOH HOH A . D 4 HOH 77 2077 2077 HOH HOH A . D 4 HOH 78 2078 2078 HOH HOH A . D 4 HOH 79 2079 2079 HOH HOH A . D 4 HOH 80 2080 2080 HOH HOH A . D 4 HOH 81 2081 2081 HOH HOH A . D 4 HOH 82 2082 2082 HOH HOH A . D 4 HOH 83 2083 2083 HOH HOH A . D 4 HOH 84 2084 2084 HOH HOH A . D 4 HOH 85 2085 2085 HOH HOH A . D 4 HOH 86 2086 2086 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-03-24 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 AMoRE phasing . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 2002 ? ? O A HOH 2023 ? ? 1.79 2 1 O A HOH 2023 ? ? O A HOH 2063 ? ? 1.93 3 1 O A HOH 2017 ? ? O A HOH 2018 ? ? 1.98 4 1 OD2 A ASP 27 ? ? O A HOH 2017 ? ? 2.12 5 1 O A HOH 2021 ? ? O A HOH 2052 ? ? 2.18 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 NH2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ARG _pdbx_validate_symm_contact.auth_seq_id_1 118 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 NH2 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 ARG _pdbx_validate_symm_contact.auth_seq_id_2 118 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 11_555 _pdbx_validate_symm_contact.dist 2.04 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CG _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 GLU _pdbx_validate_rmsd_bond.auth_seq_id_1 114 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CD _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 GLU _pdbx_validate_rmsd_bond.auth_seq_id_2 114 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.425 _pdbx_validate_rmsd_bond.bond_target_value 1.515 _pdbx_validate_rmsd_bond.bond_deviation -0.090 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.015 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 12 ? ? CZ A ARG 12 ? ? NH1 A ARG 12 ? ? 123.88 120.30 3.58 0.50 N 2 1 NE A ARG 12 ? ? CZ A ARG 12 ? ? NH2 A ARG 12 ? ? 113.58 120.30 -6.72 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 38 ? ? -121.63 -158.92 2 1 ASN A 56 ? ? 95.28 34.46 3 1 ASN A 69 ? ? -153.34 87.28 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 PRO _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 55 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ASN _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 56 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 145.72 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 158 ? CA ? A LYS 159 CA 2 1 Y 1 A LYS 158 ? C ? A LYS 159 C 3 1 Y 1 A LYS 158 ? O ? A LYS 159 O 4 1 Y 1 A LYS 158 ? CB ? A LYS 159 CB 5 1 Y 1 A LYS 158 ? CG ? A LYS 159 CG 6 1 Y 1 A LYS 158 ? CD ? A LYS 159 CD 7 1 Y 1 A LYS 158 ? CE ? A LYS 159 CE 8 1 Y 1 A LYS 158 ? NZ ? A LYS 159 NZ # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id MET _pdbx_unobs_or_zero_occ_residues.auth_seq_id 0 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id MET _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 TRIMETHOPRIM TOP 3 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' NDP 4 water HOH #