HEADER DNA BINDING PROTEIN 19-FEB-09 2WAZ TITLE N512P MUTANT OF THE DNA BINDING DOMAIN OF THE ADENOVIRUS 5 SSDNA TITLE 2 BINDING PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: E2A DNA-BINDING PROTEIN; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: C-TERMINAL DNA BINDING DOMAIN, RESIDUES 174-529; COMPND 5 SYNONYM: ADENOVIRUS 5 SSDNA BINDING PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ADENOVIRUS 5; SOURCE 3 ORGANISM_TAXID: 28285; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PETM11 KEYWDS DNA-BINDING PROTEIN, SSDNA BINDING PROTEIN, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.HENDLE,P.N.KANELLOPOULOS,P.A.TUCKER REVDAT 3 13-DEC-23 2WAZ 1 REMARK LINK REVDAT 2 24-JUL-19 2WAZ 1 REMARK REVDAT 1 31-MAR-10 2WAZ 0 JRNL AUTH J.HENDLE,P.N.KANELLOPOULOS,P.A.TUCKER JRNL TITL HIGH RESOLUTION STRUCTURES OF THE ADENOVIRUS SINGLE-STRANDED JRNL TITL 2 DNA BINDING PROTEIN AND THE N512P HINGE-REGION MUTANT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 16116 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 877 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1142 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1850 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2477 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 347 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.305 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.244 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.796 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2556 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3462 ; 1.934 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 314 ; 6.693 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;36.386 ;24.310 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 424 ;19.463 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;19.546 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 375 ; 0.157 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1945 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1584 ; 1.116 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2547 ; 2.089 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 972 ; 3.159 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 915 ; 5.011 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2WAZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1290038829. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.838 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16993 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.6 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.11000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: PDB ENTRY 1ADT REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M NANO3 WITH SODIUM ACETATE BUFFER REMARK 280 AT PH5.8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.16000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.31750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.96500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 32.31750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.16000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.96500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN X, ASN 512 TO PRO REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER X 174 REMARK 465 VAL X 175 REMARK 465 MET X 299 REMARK 465 ASP X 300 REMARK 465 VAL X 301 REMARK 465 THR X 302 REMARK 465 SER X 303 REMARK 465 GLU X 304 REMARK 465 ASN X 305 REMARK 465 GLY X 306 REMARK 465 GLN X 307 REMARK 465 ARG X 308 REMARK 465 ALA X 309 REMARK 465 LEU X 310 REMARK 465 LYS X 311 REMARK 465 GLU X 312 REMARK 465 GLN X 313 REMARK 465 SER X 314 REMARK 465 SER X 315 REMARK 465 LYS X 316 REMARK 465 ALA X 317 REMARK 465 LYS X 318 REMARK 465 ILE X 319 REMARK 465 VAL X 320 REMARK 465 LYS X 321 REMARK 465 ASN X 322 REMARK 465 ARG X 323 REMARK 465 TRP X 324 REMARK 465 GLY X 325 REMARK 465 ARG X 326 REMARK 465 ASN X 327 REMARK 465 VAL X 328 REMARK 465 VAL X 329 REMARK 465 ARG X 456 REMARK 465 ASN X 457 REMARK 465 SER X 458 REMARK 465 ARG X 459 REMARK 465 ALA X 460 REMARK 465 GLN X 461 REMARK 465 GLY X 462 REMARK 465 GLY X 463 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH X 2246 O HOH X 2330 3644 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU X 207 CA - CB - CG ANGL. DEV. = 16.0 DEGREES REMARK 500 ASP X 210 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 LEU X 379 CA - CB - CG ANGL. DEV. = 17.8 DEGREES REMARK 500 ARG X 511 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG X 511 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS X 227 48.77 -147.15 REMARK 500 PRO X 346 155.90 -48.82 REMARK 500 CYS X 396 -164.82 -104.69 REMARK 500 LEU X 420 78.45 -103.27 REMARK 500 ASP X 425 4.75 -59.21 REMARK 500 CYS X 450 152.43 -45.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN X 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 284 SG REMARK 620 2 HIS X 286 ND1 107.3 REMARK 620 3 CYS X 339 SG 116.6 104.4 REMARK 620 4 CYS X 355 SG 104.9 114.7 109.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN X 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 396 SG REMARK 620 2 CYS X 398 SG 107.5 REMARK 620 3 CYS X 450 SG 115.5 100.9 REMARK 620 4 CYS X 467 SG 105.7 116.9 110.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN X 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN X 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ANV RELATED DB: PDB REMARK 900 ADENOVIRUS 5 DBP/URANYL FLUORIDE SOAK REMARK 900 RELATED ID: 2WB0 RELATED DB: PDB REMARK 900 2.1 RESOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF THE HUMAN REMARK 900 ADENOVIRUS 5 SSDNA BINDING PROTEIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 N512P MUTATION DBREF 2WAZ X 174 529 UNP Q2KS06 DNB2_ADE05 174 529 SEQADV 2WAZ PRO X 512 UNP Q2KS06 ASN 512 ENGINEERED MUTATION SEQRES 1 X 356 SER VAL PRO ILE VAL SER ALA TRP GLU LYS GLY MET GLU SEQRES 2 X 356 ALA ALA ARG ALA LEU MET ASP LYS TYR HIS VAL ASP ASN SEQRES 3 X 356 ASP LEU LYS ALA ASN PHE LYS LEU LEU PRO ASP GLN VAL SEQRES 4 X 356 GLU ALA LEU ALA ALA VAL CYS LYS THR TRP LEU ASN GLU SEQRES 5 X 356 GLU HIS ARG GLY LEU GLN LEU THR PHE THR SER ASN LYS SEQRES 6 X 356 THR PHE VAL THR MET MET GLY ARG PHE LEU GLN ALA TYR SEQRES 7 X 356 LEU GLN SER PHE ALA GLU VAL THR TYR LYS HIS HIS GLU SEQRES 8 X 356 PRO THR GLY CYS ALA LEU TRP LEU HIS ARG CYS ALA GLU SEQRES 9 X 356 ILE GLU GLY GLU LEU LYS CYS LEU HIS GLY SER ILE MET SEQRES 10 X 356 ILE ASN LYS GLU HIS VAL ILE GLU MET ASP VAL THR SER SEQRES 11 X 356 GLU ASN GLY GLN ARG ALA LEU LYS GLU GLN SER SER LYS SEQRES 12 X 356 ALA LYS ILE VAL LYS ASN ARG TRP GLY ARG ASN VAL VAL SEQRES 13 X 356 GLN ILE SER ASN THR ASP ALA ARG CYS CYS VAL HIS ASP SEQRES 14 X 356 ALA ALA CYS PRO ALA ASN GLN PHE SER GLY LYS SER CYS SEQRES 15 X 356 GLY MET PHE PHE SER GLU GLY ALA LYS ALA GLN VAL ALA SEQRES 16 X 356 PHE LYS GLN ILE LYS ALA PHE MET GLN ALA LEU TYR PRO SEQRES 17 X 356 ASN ALA GLN THR GLY HIS GLY HIS LEU LEU MET PRO LEU SEQRES 18 X 356 ARG CYS GLU CYS ASN SER LYS PRO GLY HIS ALA PRO PHE SEQRES 19 X 356 LEU GLY ARG GLN LEU PRO LYS LEU THR PRO PHE ALA LEU SEQRES 20 X 356 SER ASN ALA GLU ASP LEU ASP ALA ASP LEU ILE SER ASP SEQRES 21 X 356 LYS SER VAL LEU ALA SER VAL HIS HIS PRO ALA LEU ILE SEQRES 22 X 356 VAL PHE GLN CYS CYS ASN PRO VAL TYR ARG ASN SER ARG SEQRES 23 X 356 ALA GLN GLY GLY GLY PRO ASN CYS ASP PHE LYS ILE SER SEQRES 24 X 356 ALA PRO ASP LEU LEU ASN ALA LEU VAL MET VAL ARG SER SEQRES 25 X 356 LEU TRP SER GLU ASN PHE THR GLU LEU PRO ARG MET VAL SEQRES 26 X 356 VAL PRO GLU PHE LYS TRP SER THR LYS HIS GLN TYR ARG SEQRES 27 X 356 PRO VAL SER LEU PRO VAL ALA HIS SER ASP ALA ARG GLN SEQRES 28 X 356 ASN PRO PHE ASP PHE HET ZN X 601 1 HET ZN X 602 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) FORMUL 4 HOH *347(H2 O) HELIX 1 1 SER X 179 TYR X 195 1 17 HELIX 2 2 ASP X 198 PHE X 205 1 8 HELIX 3 3 VAL X 212 HIS X 227 1 16 HELIX 4 4 SER X 236 GLU X 257 1 22 HELIX 5 5 VAL X 340 ALA X 343 5 4 HELIX 6 6 GLU X 361 TYR X 380 1 20 HELIX 7 7 ASP X 433 HIS X 442 1 10 HELIX 8 8 ALA X 473 GLU X 489 1 17 HELIX 9 9 SER X 505 GLN X 509 5 5 SHEET 1 XA 2 CYS X 268 LEU X 272 0 SHEET 2 XA 2 HIS X 389 PRO X 393 -1 O LEU X 390 N TRP X 271 SHEET 1 XB 3 ILE X 291 ILE X 297 0 SHEET 2 XB 3 ILE X 331 CYS X 338 -1 O ILE X 331 N ILE X 297 SHEET 3 XB 3 PHE X 358 PHE X 359 -1 O PHE X 359 N ARG X 337 SHEET 1 XC 3 LEU X 415 ALA X 419 0 SHEET 2 XC 3 ALA X 444 GLN X 449 -1 O LEU X 445 N PHE X 418 SHEET 3 XC 3 LYS X 470 SER X 472 -1 O ILE X 471 N PHE X 448 LINK SG CYS X 284 ZN ZN X 601 1555 1555 2.34 LINK ND1 HIS X 286 ZN ZN X 601 1555 1555 2.04 LINK SG CYS X 339 ZN ZN X 601 1555 1555 2.31 LINK SG CYS X 355 ZN ZN X 601 1555 1555 2.34 LINK SG CYS X 396 ZN ZN X 602 1555 1555 2.35 LINK SG CYS X 398 ZN ZN X 602 1555 1555 2.34 LINK SG CYS X 450 ZN ZN X 602 1555 1555 2.30 LINK SG CYS X 467 ZN ZN X 602 1555 1555 2.34 SITE 1 AC1 4 CYS X 284 HIS X 286 CYS X 339 CYS X 355 SITE 1 AC2 4 CYS X 396 CYS X 398 CYS X 450 CYS X 467 CRYST1 78.320 75.930 64.635 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012768 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013170 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015471 0.00000