HEADER TRANSFERASE 20-FEB-09 2WB4 TITLE ACTIVATED DIGUANYLATE CYCLASE PLED IN COMPLEX WITH C-DI-GMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIGUANYLATE CYCLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: STALKED CELL DIFFERENTIATION-CONTROLLING PROTEIN, RESPONSE COMPND 5 REGULATOR PLED, DGC, PLED; COMPND 6 EC: 2.7.7.65, 4.6.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: BERRYLIUM FLUORIDE MODIFICATION OF A 53 AND B 53 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAULOBACTER CRESCENTUS; SOURCE 3 ORGANISM_TAXID: 190650; SOURCE 4 STRAIN: CB15; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PRUN KEYWDS CELL CYCLE, TRANSFERASE, GTP-BINDING, METAL-BINDING, PHOSPHOPROTEIN, KEYWDS 2 DIFFERENTIATION, RESPONSE REGULATOR, BEF3-, C-DI-GMP, MAGNESIUM, KEYWDS 3 TRANSDUCER, TWO-COMPONENT REGULATORY SYSTEM, NUCLEOTIDE-BINDING, KEYWDS 4 DIGUANYLATE CYCLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.WASSMANN,T.SCHIRMER REVDAT 3 13-DEC-23 2WB4 1 REMARK HETSYN LINK REVDAT 2 13-JUL-11 2WB4 1 VERSN REVDAT 1 21-APR-10 2WB4 0 JRNL AUTH P.WASSMANN,C.MASSA,F.ZAEHRINGER,T.SCHIRMER JRNL TITL CRYSTAL STRUCTURE OF ACTIVATED PLED, IDENTIFICATION OF JRNL TITL 2 DIMERIZATION AND CATALYSIS RELEVANT REGULATORY MECHANISMS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 31368 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1691 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1894 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.3660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6908 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 256 REMARK 3 SOLVENT ATOMS : 50 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.69000 REMARK 3 B22 (A**2) : -1.28000 REMARK 3 B33 (A**2) : 1.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.009 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.368 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.271 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.105 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.880 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.858 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7086 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4841 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9639 ; 1.599 ; 2.015 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11670 ; 1.429 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 896 ; 5.625 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 263 ;33.452 ;22.281 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1170 ;16.815 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 74 ;20.943 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1146 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7716 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1406 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4461 ; 0.955 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7146 ; 1.772 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2625 ; 3.148 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2491 ; 5.094 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 125 1 REMARK 3 1 B 3 B 125 1 REMARK 3 2 A 185 A 260 1 REMARK 3 2 B 185 B 260 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 2471 ; 0.08 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 B (A): 2471 ; 0.08 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 2471 ; 0.09 ; 0.50 REMARK 3 TIGHT THERMAL 1 B (A**2): 2471 ; 0.09 ; 0.50 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 300 A 395 1 REMARK 3 1 B 300 B 395 1 REMARK 3 2 A 415 A 420 1 REMARK 3 2 B 415 B 420 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 A (A): 1298 ; 0.12 ; 0.05 REMARK 3 TIGHT POSITIONAL 2 B (A): 1298 ; 0.12 ; 0.05 REMARK 3 TIGHT THERMAL 2 A (A**2): 1298 ; 0.10 ; 0.50 REMARK 3 TIGHT THERMAL 2 B (A**2): 1298 ; 0.10 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 135 REMARK 3 ORIGIN FOR THE GROUP (A): 29.9480 2.6090 40.5800 REMARK 3 T TENSOR REMARK 3 T11: 0.0074 T22: 0.0120 REMARK 3 T33: 0.1382 T12: -0.0026 REMARK 3 T13: -0.0161 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 2.1965 L22: 2.1241 REMARK 3 L33: 2.9305 L12: -0.8958 REMARK 3 L13: 1.1725 L23: -1.0741 REMARK 3 S TENSOR REMARK 3 S11: 0.0910 S12: -0.0812 S13: -0.1265 REMARK 3 S21: 0.0037 S22: -0.0299 S23: 0.0603 REMARK 3 S31: 0.0704 S32: -0.0573 S33: -0.0610 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 150 A 270 REMARK 3 ORIGIN FOR THE GROUP (A): 14.6760 -10.3430 27.2960 REMARK 3 T TENSOR REMARK 3 T11: 0.0033 T22: 0.0345 REMARK 3 T33: 0.1557 T12: -0.0010 REMARK 3 T13: 0.0122 T23: -0.0172 REMARK 3 L TENSOR REMARK 3 L11: 5.3083 L22: 1.9142 REMARK 3 L33: 3.7872 L12: 0.3106 REMARK 3 L13: -2.0862 L23: 1.2775 REMARK 3 S TENSOR REMARK 3 S11: -0.0701 S12: 0.3401 S13: -0.3956 REMARK 3 S21: -0.0105 S22: 0.1302 S23: -0.1344 REMARK 3 S31: 0.0755 S32: 0.0213 S33: -0.0602 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 290 A 450 REMARK 3 ORIGIN FOR THE GROUP (A): 5.6870 47.3700 11.3570 REMARK 3 T TENSOR REMARK 3 T11: 0.0668 T22: 0.0180 REMARK 3 T33: 0.1028 T12: -0.0132 REMARK 3 T13: 0.0098 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 3.3654 L22: 2.2403 REMARK 3 L33: 2.2815 L12: -0.5460 REMARK 3 L13: -1.1132 L23: -0.8870 REMARK 3 S TENSOR REMARK 3 S11: -0.1631 S12: 0.1350 S13: -0.2323 REMARK 3 S21: -0.2932 S22: 0.0773 S23: -0.0795 REMARK 3 S31: 0.3210 S32: 0.0118 S33: 0.0857 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 135 REMARK 3 ORIGIN FOR THE GROUP (A): 31.8170 1.3990 3.3970 REMARK 3 T TENSOR REMARK 3 T11: 0.0081 T22: 0.0374 REMARK 3 T33: 0.1321 T12: -0.0017 REMARK 3 T13: 0.0288 T23: -0.0302 REMARK 3 L TENSOR REMARK 3 L11: 2.2098 L22: 1.5673 REMARK 3 L33: 3.1983 L12: -0.8976 REMARK 3 L13: -1.9920 L23: 0.9802 REMARK 3 S TENSOR REMARK 3 S11: 0.0063 S12: 0.1243 S13: 0.0395 REMARK 3 S21: 0.0345 S22: -0.0264 S23: 0.0547 REMARK 3 S31: -0.0338 S32: -0.2665 S33: 0.0202 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 160 B 270 REMARK 3 ORIGIN FOR THE GROUP (A): 47.4200 13.6510 17.3040 REMARK 3 T TENSOR REMARK 3 T11: 0.1640 T22: 0.0890 REMARK 3 T33: 0.1827 T12: -0.0200 REMARK 3 T13: 0.0171 T23: -0.0514 REMARK 3 L TENSOR REMARK 3 L11: 3.5733 L22: 2.2556 REMARK 3 L33: 4.9177 L12: 0.6708 REMARK 3 L13: -0.0308 L23: -2.4034 REMARK 3 S TENSOR REMARK 3 S11: 0.1728 S12: -0.4063 S13: 0.0681 REMARK 3 S21: 0.4067 S22: -0.1147 S23: -0.2544 REMARK 3 S31: -0.2718 S32: 0.2898 S33: -0.0581 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 290 B 400 REMARK 3 ORIGIN FOR THE GROUP (A): 5.1130 34.9040 38.8960 REMARK 3 T TENSOR REMARK 3 T11: 0.0483 T22: 0.0121 REMARK 3 T33: 0.0805 T12: -0.0104 REMARK 3 T13: -0.0025 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 1.3234 L22: 4.6968 REMARK 3 L33: 1.5138 L12: 1.1942 REMARK 3 L13: -0.2629 L23: -1.5720 REMARK 3 S TENSOR REMARK 3 S11: 0.0837 S12: -0.0996 S13: -0.0844 REMARK 3 S21: 0.3821 S22: -0.1355 S23: 0.1203 REMARK 3 S31: -0.0472 S32: -0.0128 S33: 0.0519 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 410 B 450 REMARK 3 ORIGIN FOR THE GROUP (A): 12.5600 38.6290 47.6460 REMARK 3 T TENSOR REMARK 3 T11: 0.3824 T22: 0.2358 REMARK 3 T33: 0.2503 T12: -0.1713 REMARK 3 T13: -0.2799 T23: 0.2097 REMARK 3 L TENSOR REMARK 3 L11: 0.9188 L22: 2.5064 REMARK 3 L33: 4.6575 L12: -0.5552 REMARK 3 L13: 0.7494 L23: -2.0701 REMARK 3 S TENSOR REMARK 3 S11: 0.0227 S12: -0.2881 S13: -0.1830 REMARK 3 S21: 0.8441 S22: -0.3298 S23: -0.5695 REMARK 3 S31: -0.2755 S32: 0.4281 S33: 0.3072 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2WB4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1290038836. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42374 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 72.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.800 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.0 REMARK 200 DATA REDUNDANCY : 3.450 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.26 REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.230 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2V0N REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION\: 100 MICROM PLED, REMARK 280 0.2 MM C-DI-GMP, 2 MM GMPCPP, 1 MM BECL2, 10 MM NAF, 10 MM MGCL2 REMARK 280 RESERVOIR\: 0.1 M HEPES, PH 8.0, 0.73 M NA2SO4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 61.78000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.71500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 61.78000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.71500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 ARG B 137 REMARK 465 ARG B 138 REMARK 465 MET B 139 REMARK 465 GLY B 140 REMARK 465 VAL B 141 REMARK 465 ILE B 142 REMARK 465 ALA B 143 REMARK 465 GLY B 144 REMARK 465 ALA B 145 REMARK 465 ALA B 146 REMARK 465 ALA B 147 REMARK 465 ARG B 148 REMARK 465 HIS B 455 REMARK 465 HIS B 456 REMARK 465 HIS B 457 REMARK 465 HIS B 458 REMARK 465 HIS B 459 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 12 OE1 OE2 REMARK 480 ARG A 16 CG CD NE CZ NH1 NH2 REMARK 480 GLU A 25 CG CD OE1 OE2 REMARK 480 GLU A 28 CG CD OE1 OE2 REMARK 480 MET A 33 SD CE REMARK 480 ASP A 45 CG OD1 OD2 REMARK 480 ASP A 70 CG OD1 OD2 REMARK 480 ARG A 75 NE CZ NH1 NH2 REMARK 480 ASP A 90 OD1 OD2 REMARK 480 GLU A 96 CD OE1 OE2 REMARK 480 ASP A 127 CG OD1 OD2 REMARK 480 GLN A 131 CD OE1 NE2 REMARK 480 ASP A 160 OD1 OD2 REMARK 480 GLU A 176 CD OE1 OE2 REMARK 480 ASP A 184 OD1 OD2 REMARK 480 GLU A 186 OE1 OE2 REMARK 480 LYS A 187 CE NZ REMARK 480 LYS A 189 CD CE NZ REMARK 480 LYS A 206 CG CD CE NZ REMARK 480 GLU A 220 CG CD OE1 OE2 REMARK 480 GLU A 221 CG CD OE1 OE2 REMARK 480 ARG A 222 CG CD NE CZ NH1 NH2 REMARK 480 GLN A 225 CG CD OE1 NE2 REMARK 480 ASP A 235 CG OD1 OD2 REMARK 480 ASP A 250 OD1 OD2 REMARK 480 ARG A 254 NE CZ NH1 NH2 REMARK 480 LYS A 266 CE NZ REMARK 480 GLU A 287 OE1 OE2 REMARK 480 ARG A 300 CZ NH1 NH2 REMARK 480 ARG A 301 CD NE CZ NH1 NH2 REMARK 480 ASP A 308 OD1 OD2 REMARK 480 LYS A 312 CD CE NZ REMARK 480 ASP A 344 CG OD1 OD2 REMARK 480 GLU A 345 CD OE1 OE2 REMARK 480 ARG A 348 CZ NH1 NH2 REMARK 480 GLU A 371 OE1 OE2 REMARK 480 HIS A 404 ND1 CD2 CE1 NE2 REMARK 480 GLU A 423 CG CD OE1 OE2 REMARK 480 LYS A 432 CE NZ REMARK 480 LYS A 452 CE NZ REMARK 480 GLU B 19 OE1 OE2 REMARK 480 GLU B 28 OE1 OE2 REMARK 480 ASP B 70 CG OD1 OD2 REMARK 480 ASP B 86 OD1 OD2 REMARK 480 ASP B 127 OD1 OD2 REMARK 480 GLU B 133 CD OE1 OE2 REMARK 480 ARG B 155 NE CZ NH1 NH2 REMARK 480 ASP B 160 OD1 OD2 REMARK 480 GLU B 163 CD OE1 OE2 REMARK 480 GLU B 182 CD OE1 OE2 REMARK 480 LYS B 187 CD CE NZ REMARK 480 GLU B 221 OE1 OE2 REMARK 480 ASP B 235 OD1 OD2 REMARK 480 ARG B 271 CZ NH1 NH2 REMARK 480 HIS B 284 CG ND1 CD2 CE1 NE2 REMARK 480 GLN B 293 OE1 NE2 REMARK 480 ASP B 308 OD1 OD2 REMARK 480 ASP B 319 OD1 OD2 REMARK 480 ASP B 327 CG OD1 OD2 REMARK 480 LYS B 333 CE NZ REMARK 480 ASP B 378 CG OD1 OD2 REMARK 480 GLU B 407 CB CG CD OE1 OE2 REMARK 480 MET B 408 CG SD CE REMARK 480 ASN B 410 CG OD1 ND2 REMARK 480 GLU B 428 CD OE1 OE2 REMARK 480 LYS B 432 CE NZ REMARK 480 ASP B 435 OD1 OD2 REMARK 480 GLU B 436 CD OE1 OE2 REMARK 480 GLN B 440 OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 160 NE2 GLN B 165 1.78 REMARK 500 O HOH B 2015 O HOH B 2017 1.80 REMARK 500 OD1 ASP B 327 NZ LYS B 442 2.06 REMARK 500 OD2 ASP A 53 F2 BEF A 501 2.12 REMARK 500 O21 C2E A 505 O HOH A 2024 2.13 REMARK 500 OD2 ASP B 53 F2 BEF B 501 2.13 REMARK 500 OE1 GLU A 370 O HOH A 2015 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 88 CZ ARG A 88 NH1 -0.123 REMARK 500 ARG A 88 CZ ARG A 88 NH2 -0.088 REMARK 500 CYS A 365 CB CYS A 365 SG -0.103 REMARK 500 ARG B 88 CZ ARG B 88 NH1 -0.123 REMARK 500 ARG B 88 CZ ARG B 88 NH2 -0.105 REMARK 500 GLU B 133 CG GLU B 133 CD 0.101 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 44 CD - NE - CZ ANGL. DEV. = 12.3 DEGREES REMARK 500 ARG A 44 NE - CZ - NH1 ANGL. DEV. = -10.4 DEGREES REMARK 500 ARG A 44 NE - CZ - NH2 ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG A 88 NH1 - CZ - NH2 ANGL. DEV. = -10.8 DEGREES REMARK 500 ARG A 88 NE - CZ - NH1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 88 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 91 CD - NE - CZ ANGL. DEV. = 12.5 DEGREES REMARK 500 ARG A 91 NE - CZ - NH1 ANGL. DEV. = -11.6 DEGREES REMARK 500 ARG A 91 NE - CZ - NH2 ANGL. DEV. = 10.1 DEGREES REMARK 500 ARG A 117 CD - NE - CZ ANGL. DEV. = 13.6 DEGREES REMARK 500 ARG A 117 NE - CZ - NH1 ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG A 117 NE - CZ - NH2 ANGL. DEV. = -10.0 DEGREES REMARK 500 ARG A 121 CD - NE - CZ ANGL. DEV. = 12.6 DEGREES REMARK 500 ARG A 121 NE - CZ - NH1 ANGL. DEV. = -9.8 DEGREES REMARK 500 ARG A 121 NE - CZ - NH2 ANGL. DEV. = 8.6 DEGREES REMARK 500 ARG A 301 CG - CD - NE ANGL. DEV. = 28.7 DEGREES REMARK 500 ASP A 308 CB - CG - OD1 ANGL. DEV. = 12.4 DEGREES REMARK 500 ASP A 308 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 HIS A 394 CB - CA - C ANGL. DEV. = -15.6 DEGREES REMARK 500 GLY A 445 N - CA - C ANGL. DEV. = -15.3 DEGREES REMARK 500 ARG B 44 CD - NE - CZ ANGL. DEV. = 13.3 DEGREES REMARK 500 ARG B 44 NE - CZ - NH1 ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG B 44 NE - CZ - NH2 ANGL. DEV. = -10.8 DEGREES REMARK 500 ASP B 86 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG B 88 NH1 - CZ - NH2 ANGL. DEV. = -10.2 DEGREES REMARK 500 ARG B 88 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 88 NE - CZ - NH2 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG B 91 CD - NE - CZ ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG B 91 NE - CZ - NH1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG B 91 NE - CZ - NH2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ARG B 117 CD - NE - CZ ANGL. DEV. = 12.7 DEGREES REMARK 500 ARG B 117 NE - CZ - NH1 ANGL. DEV. = -9.2 DEGREES REMARK 500 ARG B 117 NE - CZ - NH2 ANGL. DEV. = 9.3 DEGREES REMARK 500 ARG B 121 CD - NE - CZ ANGL. DEV. = 12.9 DEGREES REMARK 500 ARG B 121 NE - CZ - NH1 ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG B 121 NE - CZ - NH2 ANGL. DEV. = -10.8 DEGREES REMARK 500 ARG B 155 CG - CD - NE ANGL. DEV. = 23.0 DEGREES REMARK 500 ASP B 160 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 GLU B 163 CB - CG - CD ANGL. DEV. = 18.4 DEGREES REMARK 500 ASP B 308 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP B 327 CB - CG - OD1 ANGL. DEV. = -7.2 DEGREES REMARK 500 ASP B 327 CB - CG - OD2 ANGL. DEV. = 11.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 26 24.08 81.47 REMARK 500 VAL A 141 -65.49 -100.65 REMARK 500 ALA A 204 33.50 -99.68 REMARK 500 GLU A 423 1.43 -69.88 REMARK 500 ASP B 9 139.63 -174.12 REMARK 500 TYR B 26 23.84 81.68 REMARK 500 ALA B 204 31.86 -98.92 REMARK 500 GLU B 407 21.91 -68.89 REMARK 500 ASN B 410 82.48 -164.66 REMARK 500 ARG B 446 176.41 123.41 REMARK 500 LYS B 452 105.45 -160.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD1 REMARK 620 2 ASP A 53 OD2 84.2 REMARK 620 3 MET A 55 O 95.4 75.2 REMARK 620 4 BEF A 501 F2 140.5 57.7 85.5 REMARK 620 5 HOH A2002 O 85.3 62.7 137.7 68.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BEF A 501 BE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 53 OD1 REMARK 620 2 BEF A 501 F1 108.6 REMARK 620 3 BEF A 501 F2 109.1 109.5 REMARK 620 4 BEF A 501 F3 109.5 109.2 110.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 10 OD1 REMARK 620 2 ASP B 53 OD2 85.2 REMARK 620 3 MET B 55 O 92.3 74.6 REMARK 620 4 BEF B 501 F2 144.6 59.5 80.9 REMARK 620 5 HOH B2001 O 84.4 78.2 152.7 86.2 REMARK 620 6 HOH B2002 O 87.7 145.7 72.3 122.1 134.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BEF B 501 BE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 53 OD1 REMARK 620 2 BEF B 501 F1 109.0 REMARK 620 3 BEF B 501 F2 110.3 113.5 REMARK 620 4 BEF B 501 F3 110.1 108.2 105.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 509 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 371 OE2 REMARK 620 2 C2E B 507 O11 121.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEF A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C2E A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C2E A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1460 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1461 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEF B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C2E B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C2E B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C2E B 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1455 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1W25 RELATED DB: PDB REMARK 900 RESPONSE REGULATOR PLED IN COMPLEX WITH C- DIGMP REMARK 900 RELATED ID: 2V0N RELATED DB: PDB REMARK 900 ACTIVATED RESPONSE REGULATOR PLED IN COMPLEX WITH C-DIGMP AND GTP- REMARK 900 ALPHA-S DBREF 2WB4 A 1 454 UNP Q9A5I5 PLED_CAUCR 1 454 DBREF 2WB4 A 455 459 PDB 2WB4 2WB4 455 459 DBREF 2WB4 B 1 454 UNP Q9A5I5 PLED_CAUCR 1 454 DBREF 2WB4 B 455 459 PDB 2WB4 2WB4 455 459 SEQRES 1 A 459 MET SER ALA ARG ILE LEU VAL VAL ASP ASP ILE GLU ALA SEQRES 2 A 459 ASN VAL ARG LEU LEU GLU ALA LYS LEU THR ALA GLU TYR SEQRES 3 A 459 TYR GLU VAL SER THR ALA MET ASP GLY PRO THR ALA LEU SEQRES 4 A 459 ALA MET ALA ALA ARG ASP LEU PRO ASP ILE ILE LEU LEU SEQRES 5 A 459 ASP VAL MET MET PRO GLY MET ASP GLY PHE THR VAL CYS SEQRES 6 A 459 ARG LYS LEU LYS ASP ASP PRO THR THR ARG HIS ILE PRO SEQRES 7 A 459 VAL VAL LEU ILE THR ALA LEU ASP GLY ARG GLY ASP ARG SEQRES 8 A 459 ILE GLN GLY LEU GLU SER GLY ALA SER ASP PHE LEU THR SEQRES 9 A 459 LYS PRO ILE ASP ASP VAL MET LEU PHE ALA ARG VAL ARG SEQRES 10 A 459 SER LEU THR ARG PHE LYS LEU VAL ILE ASP GLU LEU ARG SEQRES 11 A 459 GLN ARG GLU ALA SER GLY ARG ARG MET GLY VAL ILE ALA SEQRES 12 A 459 GLY ALA ALA ALA ARG LEU ASP GLY LEU GLY GLY ARG VAL SEQRES 13 A 459 LEU ILE VAL ASP ASP ASN GLU ARG GLN ALA GLN ARG VAL SEQRES 14 A 459 ALA ALA GLU LEU GLY VAL GLU HIS ARG PRO VAL ILE GLU SEQRES 15 A 459 SER ASP PRO GLU LYS ALA LYS ILE SER ALA GLY GLY PRO SEQRES 16 A 459 VAL ASP LEU VAL ILE VAL ASN ALA ALA ALA LYS ASN PHE SEQRES 17 A 459 ASP GLY LEU ARG PHE THR ALA ALA LEU ARG SER GLU GLU SEQRES 18 A 459 ARG THR ARG GLN LEU PRO VAL LEU ALA MET VAL ASP PRO SEQRES 19 A 459 ASP ASP ARG GLY ARG MET VAL LYS ALA LEU GLU ILE GLY SEQRES 20 A 459 VAL ASN ASP ILE LEU SER ARG PRO ILE ASP PRO GLN GLU SEQRES 21 A 459 LEU SER ALA ARG VAL LYS THR GLN ILE GLN ARG LYS ARG SEQRES 22 A 459 TYR THR ASP TYR LEU ARG ASN ASN LEU ASP HIS SER LEU SEQRES 23 A 459 GLU LEU ALA VAL THR ASP GLN LEU THR GLY LEU HIS ASN SEQRES 24 A 459 ARG ARG TYR MET THR GLY GLN LEU ASP SER LEU VAL LYS SEQRES 25 A 459 ARG ALA THR LEU GLY GLY ASP PRO VAL SER ALA LEU LEU SEQRES 26 A 459 ILE ASP ILE ASP PHE PHE LYS LYS ILE ASN ASP THR PHE SEQRES 27 A 459 GLY HIS ASP ILE GLY ASP GLU VAL LEU ARG GLU PHE ALA SEQRES 28 A 459 LEU ARG LEU ALA SER ASN VAL ARG ALA ILE ASP LEU PRO SEQRES 29 A 459 CYS ARG TYR GLY GLY GLU GLU PHE VAL VAL ILE MET PRO SEQRES 30 A 459 ASP THR ALA LEU ALA ASP ALA LEU ARG ILE ALA GLU ARG SEQRES 31 A 459 ILE ARG MET HIS VAL SER GLY SER PRO PHE THR VAL ALA SEQRES 32 A 459 HIS GLY ARG GLU MET LEU ASN VAL THR ILE SER ILE GLY SEQRES 33 A 459 VAL SER ALA THR ALA GLY GLU GLY ASP THR PRO GLU ALA SEQRES 34 A 459 LEU LEU LYS ARG ALA ASP GLU GLY VAL TYR GLN ALA LYS SEQRES 35 A 459 ALA SER GLY ARG ASN ALA VAL VAL GLY LYS ALA ALA HIS SEQRES 36 A 459 HIS HIS HIS HIS SEQRES 1 B 459 MET SER ALA ARG ILE LEU VAL VAL ASP ASP ILE GLU ALA SEQRES 2 B 459 ASN VAL ARG LEU LEU GLU ALA LYS LEU THR ALA GLU TYR SEQRES 3 B 459 TYR GLU VAL SER THR ALA MET ASP GLY PRO THR ALA LEU SEQRES 4 B 459 ALA MET ALA ALA ARG ASP LEU PRO ASP ILE ILE LEU LEU SEQRES 5 B 459 ASP VAL MET MET PRO GLY MET ASP GLY PHE THR VAL CYS SEQRES 6 B 459 ARG LYS LEU LYS ASP ASP PRO THR THR ARG HIS ILE PRO SEQRES 7 B 459 VAL VAL LEU ILE THR ALA LEU ASP GLY ARG GLY ASP ARG SEQRES 8 B 459 ILE GLN GLY LEU GLU SER GLY ALA SER ASP PHE LEU THR SEQRES 9 B 459 LYS PRO ILE ASP ASP VAL MET LEU PHE ALA ARG VAL ARG SEQRES 10 B 459 SER LEU THR ARG PHE LYS LEU VAL ILE ASP GLU LEU ARG SEQRES 11 B 459 GLN ARG GLU ALA SER GLY ARG ARG MET GLY VAL ILE ALA SEQRES 12 B 459 GLY ALA ALA ALA ARG LEU ASP GLY LEU GLY GLY ARG VAL SEQRES 13 B 459 LEU ILE VAL ASP ASP ASN GLU ARG GLN ALA GLN ARG VAL SEQRES 14 B 459 ALA ALA GLU LEU GLY VAL GLU HIS ARG PRO VAL ILE GLU SEQRES 15 B 459 SER ASP PRO GLU LYS ALA LYS ILE SER ALA GLY GLY PRO SEQRES 16 B 459 VAL ASP LEU VAL ILE VAL ASN ALA ALA ALA LYS ASN PHE SEQRES 17 B 459 ASP GLY LEU ARG PHE THR ALA ALA LEU ARG SER GLU GLU SEQRES 18 B 459 ARG THR ARG GLN LEU PRO VAL LEU ALA MET VAL ASP PRO SEQRES 19 B 459 ASP ASP ARG GLY ARG MET VAL LYS ALA LEU GLU ILE GLY SEQRES 20 B 459 VAL ASN ASP ILE LEU SER ARG PRO ILE ASP PRO GLN GLU SEQRES 21 B 459 LEU SER ALA ARG VAL LYS THR GLN ILE GLN ARG LYS ARG SEQRES 22 B 459 TYR THR ASP TYR LEU ARG ASN ASN LEU ASP HIS SER LEU SEQRES 23 B 459 GLU LEU ALA VAL THR ASP GLN LEU THR GLY LEU HIS ASN SEQRES 24 B 459 ARG ARG TYR MET THR GLY GLN LEU ASP SER LEU VAL LYS SEQRES 25 B 459 ARG ALA THR LEU GLY GLY ASP PRO VAL SER ALA LEU LEU SEQRES 26 B 459 ILE ASP ILE ASP PHE PHE LYS LYS ILE ASN ASP THR PHE SEQRES 27 B 459 GLY HIS ASP ILE GLY ASP GLU VAL LEU ARG GLU PHE ALA SEQRES 28 B 459 LEU ARG LEU ALA SER ASN VAL ARG ALA ILE ASP LEU PRO SEQRES 29 B 459 CYS ARG TYR GLY GLY GLU GLU PHE VAL VAL ILE MET PRO SEQRES 30 B 459 ASP THR ALA LEU ALA ASP ALA LEU ARG ILE ALA GLU ARG SEQRES 31 B 459 ILE ARG MET HIS VAL SER GLY SER PRO PHE THR VAL ALA SEQRES 32 B 459 HIS GLY ARG GLU MET LEU ASN VAL THR ILE SER ILE GLY SEQRES 33 B 459 VAL SER ALA THR ALA GLY GLU GLY ASP THR PRO GLU ALA SEQRES 34 B 459 LEU LEU LYS ARG ALA ASP GLU GLY VAL TYR GLN ALA LYS SEQRES 35 B 459 ALA SER GLY ARG ASN ALA VAL VAL GLY LYS ALA ALA HIS SEQRES 36 B 459 HIS HIS HIS HIS HET BEF A 501 4 HET MG A 502 1 HET C2E A 503 46 HET C2E A 505 46 HET SO4 A1460 5 HET SO4 A1461 5 HET BEF B 501 4 HET MG B 502 1 HET C2E B 503 46 HET C2E B 505 46 HET C2E B 507 46 HET MG B 509 1 HET SO4 B1455 5 HETNAM BEF BERYLLIUM TRIFLUORIDE ION HETNAM MG MAGNESIUM ION HETNAM C2E 9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10, HETNAM 2 C2E 12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3, HETNAM 3 C2E 2-D:3',2'-J][1,3,7,9,2, HETNAM 4 C2E 8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO- HETNAM 5 C2E 1,9-DIHYDRO-6H-PURIN-6-ONE) HETNAM SO4 SULFATE ION HETSYN C2E C-DI-GMP; CYCLIC DIGUANOSINE MONOPHOSPHATE FORMUL 3 BEF 2(BE F3 1-) FORMUL 4 MG 3(MG 2+) FORMUL 5 C2E 5(C20 H24 N10 O14 P2) FORMUL 7 SO4 3(O4 S 2-) FORMUL 16 HOH *50(H2 O) HELIX 1 1 ILE A 11 GLU A 25 1 15 HELIX 2 2 ASP A 34 LEU A 46 1 13 HELIX 3 3 ASP A 60 ASP A 71 1 12 HELIX 4 4 GLY A 87 SER A 97 1 11 HELIX 5 5 ASP A 108 MET A 139 1 32 HELIX 6 6 ALA A 145 LEU A 149 5 5 HELIX 7 7 ASN A 162 GLY A 174 1 13 HELIX 8 8 ASP A 184 GLY A 194 1 11 HELIX 9 9 ASP A 209 GLU A 220 1 12 HELIX 10 10 GLU A 221 ARG A 224 5 4 HELIX 11 11 ASP A 236 GLY A 247 1 12 HELIX 12 12 ASP A 257 SER A 285 1 29 HELIX 13 13 ASN A 299 LEU A 316 1 18 HELIX 14 14 PHE A 330 GLY A 339 1 10 HELIX 15 15 GLY A 339 SER A 356 1 18 HELIX 16 16 ALA A 380 GLY A 397 1 18 HELIX 17 17 THR A 426 SER A 444 1 19 HELIX 18 18 ILE B 11 GLU B 25 1 15 HELIX 19 19 ASP B 34 LEU B 46 1 13 HELIX 20 20 ASP B 60 ASP B 71 1 12 HELIX 21 21 GLY B 87 SER B 97 1 11 HELIX 22 22 ASP B 108 SER B 135 1 28 HELIX 23 23 ASN B 162 VAL B 175 1 14 HELIX 24 24 ASP B 184 GLY B 194 1 11 HELIX 25 25 ASP B 209 GLU B 220 1 12 HELIX 26 26 GLU B 221 ARG B 224 5 4 HELIX 27 27 ASP B 236 GLY B 247 1 12 HELIX 28 28 ASP B 257 ALA B 289 1 33 HELIX 29 29 ASN B 299 LEU B 316 1 18 HELIX 30 30 PHE B 330 GLY B 339 1 10 HELIX 31 31 GLY B 339 ASN B 357 1 19 HELIX 32 32 ALA B 380 SER B 398 1 19 HELIX 33 33 THR B 426 GLY B 445 1 20 SHEET 1 AA 5 GLU A 28 ALA A 32 0 SHEET 2 AA 5 ARG A 4 VAL A 8 1 O ILE A 5 N SER A 30 SHEET 3 AA 5 ILE A 49 LEU A 52 1 O ILE A 49 N LEU A 6 SHEET 4 AA 5 VAL A 79 THR A 83 1 O VAL A 80 N LEU A 52 SHEET 5 AA 5 ASP A 101 THR A 104 1 O ASP A 101 N LEU A 81 SHEET 1 AB 5 ARG A 178 GLU A 182 0 SHEET 2 AB 5 ARG A 155 VAL A 159 1 O VAL A 156 N VAL A 180 SHEET 3 AB 5 LEU A 198 ASN A 202 1 O LEU A 198 N LEU A 157 SHEET 4 AB 5 VAL A 228 VAL A 232 1 O LEU A 229 N VAL A 201 SHEET 5 AB 5 ASP A 250 SER A 253 1 O ASP A 250 N ALA A 230 SHEET 1 AC 5 LEU A 363 GLY A 368 0 SHEET 2 AC 5 GLU A 371 PRO A 377 -1 O GLU A 371 N GLY A 368 SHEET 3 AC 5 VAL A 321 ILE A 328 -1 O SER A 322 N MET A 376 SHEET 4 AC 5 ILE A 413 ALA A 419 -1 O SER A 414 N ASP A 327 SHEET 5 AC 5 VAL A 449 GLY A 451 1 O VAL A 450 N VAL A 417 SHEET 1 AD 2 PHE A 400 VAL A 402 0 SHEET 2 AD 2 GLU A 407 LEU A 409 -1 O GLU A 407 N VAL A 402 SHEET 1 BA 5 GLU B 28 ALA B 32 0 SHEET 2 BA 5 ARG B 4 VAL B 8 1 O ILE B 5 N SER B 30 SHEET 3 BA 5 ILE B 49 LEU B 52 1 O ILE B 49 N LEU B 6 SHEET 4 BA 5 VAL B 79 THR B 83 1 O VAL B 80 N LEU B 52 SHEET 5 BA 5 ASP B 101 THR B 104 1 O ASP B 101 N LEU B 81 SHEET 1 BB 5 ARG B 178 ILE B 181 0 SHEET 2 BB 5 ARG B 155 VAL B 159 1 O VAL B 156 N VAL B 180 SHEET 3 BB 5 LEU B 198 ASN B 202 1 O LEU B 198 N LEU B 157 SHEET 4 BB 5 VAL B 228 VAL B 232 1 O LEU B 229 N VAL B 201 SHEET 5 BB 5 ASP B 250 SER B 253 1 O ASP B 250 N ALA B 230 SHEET 1 BC 5 LEU B 363 GLY B 368 0 SHEET 2 BC 5 GLU B 371 PRO B 377 -1 O GLU B 371 N GLY B 368 SHEET 3 BC 5 VAL B 321 ILE B 328 -1 O SER B 322 N MET B 376 SHEET 4 BC 5 ILE B 413 ALA B 419 -1 O SER B 414 N ASP B 327 SHEET 5 BC 5 VAL B 449 GLY B 451 1 O VAL B 450 N VAL B 417 LINK OD1 ASP A 10 MG MG A 502 1555 1555 2.16 LINK OD1 ASP A 53 BE BEF A 501 1555 1555 1.58 LINK OD2 ASP A 53 MG MG A 502 1555 1555 2.22 LINK O MET A 55 MG MG A 502 1555 1555 2.17 LINK F2 BEF A 501 MG MG A 502 1555 1555 2.16 LINK MG MG A 502 O HOH A2002 1555 1555 2.50 LINK OD1 ASP B 10 MG MG B 502 1555 1555 2.16 LINK OD1 ASP B 53 BE BEF B 501 1555 1555 1.58 LINK OD2 ASP B 53 MG MG B 502 1555 1555 2.17 LINK O MET B 55 MG MG B 502 1555 1555 2.17 LINK OE2 GLU B 371 MG MG B 509 1555 1555 2.19 LINK F2 BEF B 501 MG MG B 502 1555 1555 2.13 LINK MG MG B 502 O HOH B2001 1555 1555 1.79 LINK MG MG B 502 O HOH B2002 1555 1555 1.95 LINK O11 C2E B 507 MG MG B 509 1555 1555 2.23 CISPEP 1 LYS A 105 PRO A 106 0 2.07 CISPEP 2 ARG A 254 PRO A 255 0 -2.81 CISPEP 3 LYS B 105 PRO B 106 0 4.27 CISPEP 4 ARG B 254 PRO B 255 0 -1.89 SITE 1 AC1 9 ASP A 53 VAL A 54 MET A 55 THR A 83 SITE 2 AC1 9 ALA A 84 LYS A 105 MG A 502 HOH A2002 SITE 3 AC1 9 GLU B 423 SITE 1 AC2 5 ASP A 10 ASP A 53 MET A 55 BEF A 501 SITE 2 AC2 5 HOH A2002 SITE 1 AC3 11 ARG A 359 ASP A 362 ASP A 383 ARG A 386 SITE 2 AC3 11 ILE A 387 ARG A 390 C2E A 505 HOH A2020 SITE 3 AC3 11 HOH A2022 HOH A2023 ARG B 313 SITE 1 AC4 13 SER A 356 ASN A 357 VAL A 358 ARG A 359 SITE 2 AC4 13 ARG A 390 C2E A 503 HOH A2024 HOH A2025 SITE 3 AC4 13 SER B 309 LYS B 312 ARG B 313 LEU B 316 SITE 4 AC4 13 GLY B 317 SITE 1 AC5 4 ARG A 117 ARG A 121 ARG B 117 ARG B 121 SITE 1 AC6 5 PHE A 330 LYS A 442 ARG A 446 HOH A2015 SITE 2 AC6 5 ARG B 168 SITE 1 AC7 8 ASP B 53 VAL B 54 MET B 55 THR B 83 SITE 2 AC7 8 ALA B 84 LYS B 105 MG B 502 HOH B2001 SITE 1 AC8 6 ASP B 10 ASP B 53 MET B 55 BEF B 501 SITE 2 AC8 6 HOH B2001 HOH B2002 SITE 1 AC9 8 ARG A 313 ARG B 359 ASP B 362 ASP B 383 SITE 2 AC9 8 ARG B 386 ILE B 387 ARG B 390 C2E B 505 SITE 1 BC1 12 SER A 309 ARG A 313 LEU A 316 GLY A 317 SITE 2 BC1 12 SER B 356 ASN B 357 VAL B 358 ARG B 359 SITE 3 BC1 12 ARG B 390 C2E B 503 HOH B2018 HOH B2023 SITE 1 BC2 15 PRO A 72 ARG A 137 GLY A 144 ALA A 146 SITE 2 BC2 15 TYR A 277 PHE B 331 ASN B 335 HIS B 340 SITE 3 BC2 15 ASP B 344 ARG B 366 GLY B 369 GLU B 370 SITE 4 BC2 15 MG B 509 HOH B2024 HOH B2025 SITE 1 BC3 4 GLY B 369 GLU B 370 GLU B 371 C2E B 507 SITE 1 BC4 7 ILE B 328 ASP B 329 PHE B 330 PHE B 331 SITE 2 BC4 7 GLU B 370 LYS B 442 ARG B 446 CRYST1 123.560 127.430 88.130 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008093 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007847 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011347 0.00000