HEADER OXIDOREDUCTASE 02-MAR-09 2WBQ TITLE CRYSTAL STRUCTURE OF VIOC IN COMPLEX WITH (2S,3S)-HYDROXYARGININE COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-ARGININE BETA-HYDROXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: L-ARGININE OXYGENASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES VINACEUS; SOURCE 3 ORGANISM_TAXID: 1960; SOURCE 4 ATCC: 11861; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET-28A; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28VIOC KEYWDS OXIDOREDUCTASE, NON-HEME FE(II) HYDROXYLASE, CBETA-HYDROXYLATION, L- KEYWDS 2 ARGININE OXYGENASE, NRPS, VIOMYCIN, ALPHA-KETOGLUTARATE EXPDTA X-RAY DIFFRACTION AUTHOR V.HELMETAG,S.A.SAMEL,M.G.THOMAS,M.A.MARAHIEL,L.-O.ESSEN REVDAT 4 13-DEC-23 2WBQ 1 REMARK REVDAT 3 15-NOV-23 2WBQ 1 REMARK ATOM REVDAT 2 08-MAY-13 2WBQ 1 REMARK VERSN HET HETNAM REVDAT 2 2 1 FORMUL SITE REVDAT 1 23-JUN-09 2WBQ 0 JRNL AUTH V.HELMETAG,S.A.SAMEL,M.G.THOMAS,M.A.MARAHIEL,L.-O.ESSEN JRNL TITL STRUCTURAL BASIS FOR THE ERYTHRO-STEREOSPECIFICITY OF THE JRNL TITL 2 L-ARGININE OXYGENASE VIOC IN VIOMYCIN BIOSYNTHESIS. JRNL REF FEBS J. V. 276 3669 2009 JRNL REFN ISSN 1742-464X JRNL PMID 19490124 JRNL DOI 10.1111/J.1742-4658.2009.07085.X REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 121303 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2249 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7823 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 151 REMARK 3 BIN FREE R VALUE : 0.3360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2594 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 461 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.31000 REMARK 3 B22 (A**2) : -0.39000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.98000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.030 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.032 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.027 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.336 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.982 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2851 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2023 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3900 ; 1.449 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4850 ; 1.282 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 371 ; 6.786 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;34.153 ;21.554 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 458 ;12.884 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;17.460 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 423 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3282 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 663 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 633 ; 0.229 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2428 ; 0.253 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1367 ; 0.183 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 1667 ; 0.083 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 610 ; 0.236 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.255 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 106 ; 0.417 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 80 ; 0.280 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1773 ; 7.250 ; 2.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2798 ; 7.913 ; 3.500 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1195 ;11.799 ; 2.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1084 ;13.345 ; 3.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2WBQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1290038914. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 123576 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2OG5 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.6 M TRI-SODIUM CITRATE 0.1 M HEPES REMARK 280 PH 7.5 3 MM (2S,3S)-HYDROXYARGININE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 40.45500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.41500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 40.45500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.41500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2386 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2447 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 SER A 4 REMARK 465 PRO A 5 REMARK 465 THR A 6 REMARK 465 THR A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 GLY A 10 REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 PRO A 13 REMARK 465 PRO A 14 REMARK 465 ASP A 15 REMARK 465 SER A 16 REMARK 465 VAL A 17 REMARK 465 ALA A 18 REMARK 465 THR A 19 REMARK 465 PRO A 20 REMARK 465 THR A 232 REMARK 465 ALA A 233 REMARK 465 GLN A 234 REMARK 465 GLN A 235 REMARK 465 GLN A 357 REMARK 465 ARG A 358 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY A 236 N REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2426 O HOH A 2429 1.67 REMARK 500 O HOH A 2242 O HOH A 2243 1.75 REMARK 500 O HOH A 2360 O HOH A 2383 1.76 REMARK 500 O HOH A 2189 O HOH A 2202 1.89 REMARK 500 NZ LYS A 69 O HOH A 2106 1.97 REMARK 500 O HOH A 2232 O HOH A 2432 1.98 REMARK 500 OD2 ASP A 222 O HOH A 2320 2.07 REMARK 500 O HOH A 2214 O HOH A 2457 2.08 REMARK 500 OE1 GLU A 66 O HOH A 2100 2.09 REMARK 500 OD1 ASP A 210 O HOH A 2311 2.14 REMARK 500 NZ LYS A 69 O HOH A 2107 2.14 REMARK 500 O HOH A 2388 O HOH A 2389 2.15 REMARK 500 O VAL A 94 O HOH A 2161 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2385 O HOH A 2434 4556 1.79 REMARK 500 O HOH A 2169 O HOH A 2294 3545 1.90 REMARK 500 O HOH A 2093 O HOH A 2125 2555 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 312 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 345 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 345 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 353 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 161 -69.49 -153.82 REMARK 500 ASN A 188 65.12 -159.94 REMARK 500 ILE A 219 -122.89 -121.06 REMARK 500 ILE A 219 -161.30 -112.71 REMARK 500 ARG A 220 149.84 161.32 REMARK 500 ALA A 262 65.42 -160.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2112 DISTANCE = 5.98 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1357 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZZU A 1358 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WBP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF VIOC IN COMPLEX WITH FE(II), (2S,3S)- REMARK 900 HYDROXYARGININE, AND SUCCINATE REMARK 900 RELATED ID: 2WBO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF VIOC IN COMPLEX WITH L-ARGININE DBREF 2WBQ A 1 358 UNP Q6WZB0 Q6WZB0_STRVI 1 358 SEQADV 2WBQ LYS A 69 UNP Q6WZB0 ARG 69 CONFLICT SEQRES 1 A 358 MET THR GLU SER PRO THR THR HIS HIS GLY ALA ALA PRO SEQRES 2 A 358 PRO ASP SER VAL ALA THR PRO VAL ARG PRO TRP SER GLU SEQRES 3 A 358 PHE ARG LEU THR PRO ALA GLU ALA ALA ALA ALA ALA ALA SEQRES 4 A 358 LEU ALA ALA ARG CYS ALA GLN ARG TYR ASP GLU THR ASP SEQRES 5 A 358 GLY PRO GLU PHE LEU LEU ASP ALA PRO VAL ILE ALA HIS SEQRES 6 A 358 GLU LEU PRO LYS ARG LEU ARG THR PHE MET ALA ARG ALA SEQRES 7 A 358 ARG LEU ASP ALA TRP PRO HIS ALA LEU VAL VAL ARG GLY SEQRES 8 A 358 ASN PRO VAL ASP ASP ALA ALA LEU GLY SER THR PRO VAL SEQRES 9 A 358 HIS TRP ARG THR ALA ARG THR PRO GLY SER ARG PRO LEU SEQRES 10 A 358 SER PHE LEU LEU MET LEU TYR ALA GLY LEU LEU GLY ASP SEQRES 11 A 358 VAL PHE GLY TRP ALA THR GLN GLN ASP GLY ARG VAL VAL SEQRES 12 A 358 THR ASP VAL LEU PRO ILE LYS GLY GLY GLU HIS THR LEU SEQRES 13 A 358 VAL SER SER SER SER ARG GLN GLU LEU GLY TRP HIS THR SEQRES 14 A 358 GLU ASP ALA PHE SER PRO TYR ARG ALA ASP TYR VAL GLY SEQRES 15 A 358 LEU LEU SER LEU ARG ASN PRO ASP GLY VAL ALA THR THR SEQRES 16 A 358 LEU ALA GLY VAL PRO LEU ASP ASP LEU ASP GLU ARG THR SEQRES 17 A 358 LEU ASP VAL LEU PHE GLN GLU ARG PHE LEU ILE ARG PRO SEQRES 18 A 358 ASP ASP SER HIS LEU GLN VAL ASN ASN SER THR ALA GLN SEQRES 19 A 358 GLN GLY ARG VAL GLU PHE GLU GLY ILE ALA GLN ALA ALA SEQRES 20 A 358 ASP ARG PRO GLU PRO VAL ALA ILE LEU THR GLY HIS ARG SEQRES 21 A 358 ALA ALA PRO HIS LEU ARG VAL ASP GLY ASP PHE SER ALA SEQRES 22 A 358 PRO ALA GLU GLY ASP GLU GLU ALA ALA ALA ALA LEU GLY SEQRES 23 A 358 THR LEU ARG LYS LEU ILE ASP ALA SER LEU TYR GLU LEU SEQRES 24 A 358 VAL LEU ASP GLN GLY ASP VAL ALA PHE ILE ASP ASN ARG SEQRES 25 A 358 ARG ALA VAL HIS GLY ARG ARG ALA PHE GLN PRO ARG TYR SEQRES 26 A 358 ASP GLY ARG ASP ARG TRP LEU LYS ARG ILE ASN ILE THR SEQRES 27 A 358 ARG ASP LEU HIS ARG SER ARG LYS ALA TRP ALA GLY ASP SEQRES 28 A 358 SER ARG VAL LEU GLY GLN ARG HET ACT A1357 4 HET ZZU A1358 26 HETNAM ACT ACETATE ION HETNAM ZZU (2S,3S)-3-HYDROXYARGININE FORMUL 2 ACT C2 H3 O2 1- FORMUL 3 ZZU C6 H14 N4 O3 FORMUL 4 HOH *461(H2 O) HELIX 1 1 THR A 30 TYR A 48 1 19 HELIX 2 2 GLY A 53 ALA A 64 1 12 HELIX 3 3 HIS A 65 LEU A 67 5 3 HELIX 4 4 PRO A 68 ARG A 79 1 12 HELIX 5 5 ASP A 95 GLY A 100 1 6 HELIX 6 6 THR A 111 GLY A 113 5 3 HELIX 7 7 SER A 114 LEU A 127 1 14 HELIX 8 8 GLN A 137 ARG A 141 5 5 HELIX 9 9 ASP A 205 PHE A 213 1 9 HELIX 10 10 ASP A 222 LEU A 226 5 5 HELIX 11 11 LEU A 226 ASN A 230 5 5 HELIX 12 12 VAL A 238 ARG A 249 1 12 HELIX 13 13 ASP A 278 LEU A 296 1 19 HELIX 14 14 ASP A 340 LYS A 346 5 7 SHEET 1 AA 8 SER A 25 ARG A 28 0 SHEET 2 AA 8 ALA A 86 ARG A 90 1 O ALA A 86 N SER A 25 SHEET 3 AA 8 VAL A 306 ASP A 310 -1 O VAL A 306 N VAL A 89 SHEET 4 AA 8 TYR A 180 ARG A 187 -1 O VAL A 181 N ILE A 309 SHEET 5 AA 8 TRP A 331 THR A 338 -1 O TRP A 331 N LEU A 186 SHEET 6 AA 8 ASP A 130 TRP A 134 -1 O ASP A 130 N THR A 338 SHEET 7 AA 8 VAL A 354 LEU A 355 1 N LEU A 355 O GLY A 133 SHEET 8 AA 8 TRP A 348 ASP A 351 -1 N ALA A 349 O VAL A 354 SHEET 1 AB 6 SER A 25 ARG A 28 0 SHEET 2 AB 6 ALA A 86 ARG A 90 1 O ALA A 86 N SER A 25 SHEET 3 AB 6 VAL A 306 ASP A 310 -1 O VAL A 306 N VAL A 89 SHEET 4 AB 6 TYR A 180 ARG A 187 -1 O VAL A 181 N ILE A 309 SHEET 5 AB 6 TRP A 331 THR A 338 -1 O TRP A 331 N LEU A 186 SHEET 6 AB 6 THR A 144 VAL A 146 -1 O THR A 144 N ARG A 334 SHEET 1 AC 4 LEU A 165 HIS A 168 0 SHEET 2 AC 4 ALA A 314 ARG A 318 -1 O HIS A 316 N HIS A 168 SHEET 3 AC 4 ALA A 193 GLY A 198 -1 O THR A 195 N GLY A 317 SHEET 4 AC 4 TYR A 297 VAL A 300 -1 O TYR A 297 N LEU A 196 SHEET 1 AD 2 PHE A 217 LEU A 218 0 SHEET 2 AD 2 ALA A 273 PRO A 274 -1 O ALA A 273 N LEU A 218 SHEET 1 AE 2 LEU A 256 HIS A 259 0 SHEET 2 AE 2 ALA A 262 LEU A 265 -1 O ALA A 262 N HIS A 259 SITE 1 AC1 6 VAL A 146 THR A 194 ARG A 318 ARG A 330 SITE 2 AC1 6 LEU A 332 HOH A2245 SITE 1 AC2 15 GLN A 137 LEU A 156 VAL A 157 SER A 158 SITE 2 AC2 15 LEU A 165 HIS A 168 GLU A 170 ASP A 222 SITE 3 AC2 15 SER A 224 ASP A 268 ASP A 270 ARG A 334 SITE 4 AC2 15 HOH A2419 HOH A2460 HOH A2461 CRYST1 80.910 66.830 62.730 90.00 109.17 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012359 0.000000 0.004297 0.00000 SCALE2 0.000000 0.014963 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016877 0.00000