HEADER DNA-BINDING PROTEIN 03-MAR-09 2WBR TITLE THE RRM DOMAIN IN GW182 PROTEINS CONTRIBUTES TO MIRNA- TITLE 2 MEDIATED GENE SILENCING COMPND MOL_ID: 1; COMPND 2 MOLECULE: GW182; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RRM DOMAIN, RESIDUES 1114-1198; COMPND 5 SYNONYM: GAWKY, LD47780P; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) ROSETTA 2; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PETM60 KEYWDS DNA-BINDING PROTEIN, RRM, RBD, GW182, TNRC6A, MIRNAS, KEYWDS 2 P-BODIES, ARGONAUTE, MRNA DECAY EXPDTA SOLUTION NMR NUMMDL 24 AUTHOR A.EULALIO,F.TRITSCHLER,R.BUETTNER,O.WEICHENRIEDER, AUTHOR 2 E.IZAURRALDE,V.TRUFFAULT REVDAT 3 02-JUN-09 2WBR 1 JRNL REVDAT 2 31-MAR-09 2WBR 1 JRNL REVDAT 1 24-MAR-09 2WBR 0 JRNL AUTH A.EULALIO,F.TRITSCHLER,R.BUETTNER,O.WEICHENRIEDER, JRNL AUTH 2 E.IZAURRALDE,V.TRUFFAULT JRNL TITL THE RRM DOMAIN IN GW182 PROTEINS CONTRIBUTES TO JRNL TITL 2 MIRNA-MEDIATED GENE SILENCING. JRNL REF NUCLEIC ACIDS RES. V. 37 2974 2009 JRNL REFN ISSN 0305-1048 JRNL PMID 19295135 JRNL DOI 10.1093/NAR/GKP173 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 2.9.4A REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2WBR COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-MAR-09. REMARK 100 THE PDBE ID CODE IS EBI-38936. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 10% WATER/90% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : CBCACONH, CCCONH, CCHCOSY, REMARK 210 CCHNOESY, CCHTOCSY, CHSQC, REMARK 210 CNHNOESY, HBHACONH, REMARK 210 HCHNOESY, HNCA, HNCACO, REMARK 210 HNCACB, HNCO, HNHA, HNHB, REMARK 210 HNHNOESY, NHSQC, NNHNOESY, REMARK 210 NOESYNON REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY REMARK 210 METHOD USED : XPLOR REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 24 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NONE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A1123 47.48 70.22 REMARK 500 1 ALA A1178 107.83 -48.48 REMARK 500 2 ASN A1123 47.40 71.01 REMARK 500 2 ALA A1178 107.83 -48.56 REMARK 500 3 ASN A1123 47.37 70.39 REMARK 500 3 ALA A1178 107.73 -49.08 REMARK 500 4 ALA A1178 107.68 -49.01 REMARK 500 5 ALA A1178 107.84 -48.55 REMARK 500 6 ASN A1123 47.44 70.93 REMARK 500 6 ALA A1178 107.78 -48.71 REMARK 500 7 ASN A1123 47.50 70.87 REMARK 500 7 VAL A1144 -60.70 -124.51 REMARK 500 7 SER A1145 112.43 -161.78 REMARK 500 7 ALA A1178 107.64 -51.78 REMARK 500 8 ASN A1123 47.47 71.31 REMARK 500 8 VAL A1144 -65.44 -131.09 REMARK 500 8 ALA A1178 107.66 -49.12 REMARK 500 9 ASN A1123 47.56 71.71 REMARK 500 9 ALA A1178 107.84 -48.52 REMARK 500 10 ALA A1178 107.79 -48.55 REMARK 500 11 ASN A1123 47.42 70.82 REMARK 500 11 VAL A1144 -67.20 -131.15 REMARK 500 11 SER A1145 118.04 -168.60 REMARK 500 11 ALA A1178 107.87 -48.60 REMARK 500 12 ASN A1123 47.42 71.38 REMARK 500 12 VAL A1144 -71.88 -131.16 REMARK 500 12 SER A1145 118.08 -168.62 REMARK 500 12 ALA A1178 107.85 -48.20 REMARK 500 13 ASN A1123 47.58 70.80 REMARK 500 13 VAL A1144 -65.12 -128.00 REMARK 500 13 SER A1145 108.86 -160.82 REMARK 500 13 ALA A1178 107.80 -48.58 REMARK 500 14 ASN A1123 47.36 71.04 REMARK 500 14 ALA A1178 107.82 -48.58 REMARK 500 15 ASN A1123 47.39 72.15 REMARK 500 15 ALA A1178 107.79 -48.69 REMARK 500 16 ASN A1123 47.51 70.08 REMARK 500 16 ALA A1178 107.83 -48.40 REMARK 500 17 ASN A1123 47.33 70.95 REMARK 500 17 VAL A1144 -66.61 -128.24 REMARK 500 17 SER A1145 116.61 -160.59 REMARK 500 17 ALA A1178 107.72 -49.15 REMARK 500 18 ASN A1123 47.46 71.57 REMARK 500 18 ALA A1178 107.80 -48.56 REMARK 500 19 ALA A1178 107.66 -49.23 REMARK 500 20 ASN A1123 47.50 70.35 REMARK 500 20 ALA A1178 107.88 -48.75 REMARK 500 21 ASN A1123 47.36 70.98 REMARK 500 21 THR A1161 109.94 48.71 REMARK 500 21 ALA A1178 107.79 -48.50 REMARK 500 22 VAL A1144 -66.04 -130.97 REMARK 500 22 ALA A1178 107.87 -48.84 REMARK 500 23 VAL A1144 -64.19 -91.30 REMARK 500 23 ALA A1178 107.78 -48.41 REMARK 500 24 ASN A1123 47.62 71.66 REMARK 500 24 VAL A1144 -63.79 -130.49 REMARK 500 24 ALA A1178 107.86 -48.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 1128 ASP A 1129 1 143.01 REMARK 500 ILE A 1128 ASP A 1129 2 145.89 REMARK 500 ILE A 1128 ASP A 1129 3 143.41 REMARK 500 ILE A 1128 ASP A 1129 4 146.02 REMARK 500 ILE A 1128 ASP A 1129 5 145.16 REMARK 500 ILE A 1128 ASP A 1129 6 144.68 REMARK 500 ILE A 1128 ASP A 1129 7 145.78 REMARK 500 ILE A 1128 ASP A 1129 8 146.50 REMARK 500 ILE A 1128 ASP A 1129 9 142.49 REMARK 500 ILE A 1128 ASP A 1129 10 141.76 REMARK 500 ILE A 1128 ASP A 1129 11 146.25 REMARK 500 ILE A 1128 ASP A 1129 12 144.69 REMARK 500 ILE A 1128 ASP A 1129 13 146.34 REMARK 500 ILE A 1128 ASP A 1129 14 142.71 REMARK 500 ILE A 1128 ASP A 1129 15 144.10 REMARK 500 ILE A 1128 ASP A 1129 16 144.11 REMARK 500 ILE A 1128 ASP A 1129 17 146.03 REMARK 500 ILE A 1128 ASP A 1129 18 143.48 REMARK 500 ILE A 1128 ASP A 1129 19 147.50 REMARK 500 ILE A 1128 ASP A 1129 20 143.53 REMARK 500 ILE A 1128 ASP A 1129 21 145.69 REMARK 500 ILE A 1128 ASP A 1129 22 145.90 REMARK 500 ILE A 1128 ASP A 1129 23 147.55 REMARK 500 ILE A 1128 ASP A 1129 24 148.13 REMARK 500 REMARK 500 REMARK: NULL DBREF 2WBR A 1110 1113 PDB 2WBR 2WBR 1110 1113 DBREF 2WBR A 1114 1198 UNP Q8SY33 Q8SY33_DROME 1114 1198 SEQRES 1 A 89 GLY ALA MET ALA TRP GLY SER SER TRP LEU LEU LEU LYS SEQRES 2 A 89 ASN LEU THR ALA GLN ILE ASP GLY PRO THR LEU ARG THR SEQRES 3 A 89 LEU CYS MET GLN HIS GLY PRO LEU VAL SER PHE HIS PRO SEQRES 4 A 89 TYR LEU ASN GLN GLY ILE ALA LEU CYS LYS TYR THR THR SEQRES 5 A 89 ARG GLU GLU ALA ASN LYS ALA GLN MET ALA LEU ASN ASN SEQRES 6 A 89 CYS VAL LEU ALA ASN THR THR ILE PHE ALA GLU SER PRO SEQRES 7 A 89 SER GLU ASN GLU VAL GLN SER ILE MET GLN HIS HELIX 1 1 GLY A 1130 GLY A 1141 1 12 HELIX 2 2 THR A 1161 ASN A 1173 1 13 HELIX 3 3 SER A 1188 GLN A 1197 1 10 SHEET 1 AA 5 LEU A1143 TYR A1149 0 SHEET 2 AA 5 ILE A1154 TYR A1159 -1 O ILE A1154 N TYR A1149 SHEET 3 AA 5 TRP A1118 LYS A1122 -1 O LEU A1119 N CYS A1157 SHEET 4 AA 5 THR A1180 GLU A1185 -1 O PHE A1183 N LYS A1122 SHEET 5 AA 5 CYS A1175 LEU A1177 -1 O CYS A1175 N ILE A1182 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1