HEADER HYDROLASE 24-MAR-09 2WDE TITLE TERMUS THERMOPHILUS SULFATE THIOHYDROLASE SOXB IN COMPLEX WITH TITLE 2 THIOSULFATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULFUR OXIDATION PROTEIN SOXB; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 24-573; COMPND 5 SYNONYM: SOXB; COMPND 6 EC: 3.12.2.1; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: THERMUS THERMOPHILUS HB27 SOXB SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 STRAIN: HB27; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PQE80L; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVS048 KEYWDS HYDROLASE, SULFUR OXIDATION PATHWAY, SOX, SOXB, SULFUR-SULFUR KEYWDS 2 HYDROLYSIS, CYS S-THIOSULFONATE EXPDTA X-RAY DIFFRACTION AUTHOR V.SAUVE,P.ROVERSI,K.J.LEATH,E.F.GARMAN,R.ANTROBUS,S.M.LEA,B.C.BERKS REVDAT 5 13-DEC-23 2WDE 1 REMARK LINK REVDAT 4 05-JUL-17 2WDE 1 REMARK REVDAT 3 11-AUG-09 2WDE 1 JRNL REMARK MASTER REVDAT 2 30-JUN-09 2WDE 1 AUTHOR JRNL REVDAT 1 16-JUN-09 2WDE 0 JRNL AUTH V.SAUVE,P.ROVERSI,K.J.LEATH,E.F.GARMAN,R.ANTROBUS,S.M.LEA, JRNL AUTH 2 B.C.BERKS JRNL TITL MECHANISM FOR THE HYDROLYSIS OF A SULFUR-SULFUR BOND BASED JRNL TITL 2 ON THE CRYSTAL STRUCTURE OF THE THIOSULFOHYDROLASE SOXB. JRNL REF J.BIOL.CHEM. V. 284 21707 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19535341 JRNL DOI 10.1074/JBC.M109.002709 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.5.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 50825 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2581 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.96 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.82 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 8069 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2390 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7697 REMARK 3 BIN R VALUE (WORKING SET) : 0.2379 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.61 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 372 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4307 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 439 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.58976 REMARK 3 B22 (A**2) : 2.42624 REMARK 3 B33 (A**2) : -1.83648 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : NULL ; NULL ; NULL REMARK 3 BOND ANGLES : NULL ; NULL ; NULL REMARK 3 TORSION ANGLES : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : NULL ; NULL ; NULL REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. AUTOBUSTER BETA VERSION 2.5.1 DECEMBER 2008 REMARK 4 REMARK 4 2WDE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1290039183. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MONTEL OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XPREP REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48244 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 64.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2WDC REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5MM TRISHCL PH 8.0, 0.1M NACL, 0.05M REMARK 280 TRIS-ACETATE PH 8.5, 12-13% T-BUTANOL, 1MM MNCL2 AND 1 MM NA2S2O3 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.40050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.69150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.36900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.69150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.40050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.36900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 12 REMARK 465 ALA A 13 REMARK 465 SER A 14 REMARK 465 TRP A 15 REMARK 465 SER A 16 REMARK 465 HIS A 17 REMARK 465 PRO A 18 REMARK 465 GLN A 19 REMARK 465 PHE A 20 REMARK 465 GLU A 21 REMARK 465 LYS A 22 REMARK 465 GLY A 23 REMARK 465 ALA A 24 REMARK 465 LEU A 25 REMARK 465 GLU A 26 REMARK 465 ASP A 27 REMARK 465 PRO A 28 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 30 85.35 168.18 REMARK 500 GLN A 51 94.34 -69.49 REMARK 500 HIS A 174 -86.32 -159.77 REMARK 500 SER A 197 120.26 -176.02 REMARK 500 HIS A 297 -49.10 74.73 REMARK 500 SER A 317 -142.53 57.53 REMARK 500 ASP A 386 154.51 172.47 REMARK 500 ASP A 468 108.68 -37.92 REMARK 500 GLN A 472 -143.20 37.29 REMARK 500 GLN A 473 -15.97 -148.21 REMARK 500 ASP A 476 155.36 -20.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2016 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A2052 DISTANCE = 7.45 ANGSTROMS REMARK 525 HOH A2074 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A2079 DISTANCE = 6.71 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 MANGANESE II ION (MN): SUPPLEMENTED AS 2 MM MNCL2 REMARK 600 THIOSULFATE (THJ): SUPPLEMENTED AS 2MM NA2S2O3 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1577 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 47 OD1 REMARK 620 2 HIS A 49 NE2 114.6 REMARK 620 3 ASP A 143 OD2 81.3 93.0 REMARK 620 4 HIS A 299 NE2 84.9 101.6 163.1 REMARK 620 5 THJ A1579 O2 154.9 90.1 93.3 95.1 REMARK 620 6 HOH A2438 O 78.8 160.3 74.1 93.7 76.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1578 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 143 OD2 REMARK 620 2 HIS A 174 ND1 104.0 REMARK 620 3 HIS A 274 NE2 88.8 98.0 REMARK 620 4 HIS A 297 ND1 156.7 98.7 92.8 REMARK 620 5 THJ A1579 O1 87.6 83.6 176.4 90.2 REMARK 620 6 HOH A2438 O 69.0 154.9 105.7 88.3 72.2 REMARK 620 N 1 2 3 4 5 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TBU A 1573 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TBU A 1574 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TBU A 1575 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TBU A 1576 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1577 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1578 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE THJ A 1579 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WDC RELATED DB: PDB REMARK 900 TERMUS THERMOPHILUS SULFATE THIOHYDROLASE SOXB IN COMPLEX WITH REMARK 900 GLYCEROL REMARK 900 RELATED ID: 2WDD RELATED DB: PDB REMARK 900 TERMUS THERMOPHILUS SULFATE THIOHYDROLASE SOXB IN COMPLEX WITH REMARK 900 SULFATE REMARK 900 RELATED ID: 2WDF RELATED DB: PDB REMARK 900 TERMUS THERMOPHILUS SULFATE THIOHYDROLASE SOXB REMARK 999 REMARK 999 SEQUENCE REMARK 999 STREP II TAG AT THE NTERMINUS REPLACED THE TAT SIGNAL REMARK 999 PEPTIDE DBREF 2WDE A 12 23 PDB 2WDE 2WDE 12 23 DBREF 2WDE A 24 573 UNP Q72IT0 Q72IT0_THET2 24 573 SEQRES 1 A 562 MET ALA SER TRP SER HIS PRO GLN PHE GLU LYS GLY ALA SEQRES 2 A 562 LEU GLU ASP PRO ARG SER LEU TYR ASP LEU PRO PRO TYR SEQRES 3 A 562 GLY ASP ALA THR LEU LEU TYR PHE SER ASP LEU HIS GLY SEQRES 4 A 562 GLN ALA PHE PRO HIS TYR PHE MET GLU PRO PRO ASN LEU SEQRES 5 A 562 ILE ALA PRO LYS PRO LEU MET GLY ARG PRO GLY TYR LEU SEQRES 6 A 562 THR GLY GLU ALA ILE LEU ARG TYR TYR GLY VAL GLU ARG SEQRES 7 A 562 GLY THR PRO LEU ALA TYR LEU LEU SER TYR VAL ASP PHE SEQRES 8 A 562 VAL GLU LEU ALA ARG THR PHE GLY PRO ILE GLY GLY MET SEQRES 9 A 562 GLY ALA LEU THR ALA LEU ILE ARG ASP GLN LYS ALA ARG SEQRES 10 A 562 VAL GLU ALA GLU GLY GLY LYS ALA LEU VAL LEU ASP GLY SEQRES 11 A 562 GLY ASP THR TRP THR ASN SER GLY LEU SER LEU LEU THR SEQRES 12 A 562 ARG GLY GLU ALA VAL VAL ARG TRP GLN ASN LEU VAL GLY SEQRES 13 A 562 VAL ASP HIS MET VAL SER HIS TRP GLU TRP THR LEU GLY SEQRES 14 A 562 ARG GLU ARG VAL GLU GLU LEU LEU GLY LEU PHE ARG GLY SEQRES 15 A 562 GLU PHE LEU SER TYR ASN ILE VAL ASP ASP LEU PHE GLY SEQRES 16 A 562 ASP PRO LEU PHE PRO ALA TYR ARG ILE HIS ARG VAL GLY SEQRES 17 A 562 PRO TYR ALA LEU ALA VAL VAL GLY ALA SER TYR PRO TYR SEQRES 18 A 562 VAL LYS VAL SER HIS PRO GLU SER PHE THR GLU GLY LEU SEQRES 19 A 562 SER PHE ALA LEU ASP GLU ARG ARG LEU GLN GLU ALA VAL SEQRES 20 A 562 ASP LYS ALA ARG ALA GLU GLY ALA ASN ALA VAL VAL LEU SEQRES 21 A 562 LEU SER HIS ASN GLY MET GLN LEU ASP ALA ALA LEU ALA SEQRES 22 A 562 GLU ARG ILE ARG GLY ILE ASP LEU ILE LEU SER GLY HIS SEQRES 23 A 562 THR HIS ASP LEU THR PRO ARG PRO TRP ARG VAL GLY LYS SEQRES 24 A 562 THR TRP ILE VAL ALA GLY SER ALA ALA GLY LYS ALA LEU SEQRES 25 A 562 MET ARG VAL ASP LEU LYS LEU TRP LYS GLY GLY ILE ALA SEQRES 26 A 562 ASN LEU ARG VAL ARG VAL LEU PRO VAL LEU ALA GLU HIS SEQRES 27 A 562 LEU PRO LYS ALA GLU ASP VAL GLU ALA PHE LEU LYS ALA SEQRES 28 A 562 GLN LEU ALA PRO HIS GLN ASP HIS LEU PHE THR PRO LEU SEQRES 29 A 562 ALA VAL SER GLU THR LEU LEU TYR LYS ARG ASP THR LEU SEQRES 30 A 562 TYR SER THR TRP ASP GLN LEU VAL GLY GLU ALA VAL LYS SEQRES 31 A 562 ALA ILE TYR PRO GLU VAL GLU VAL VAL PHE SER PRO ALA SEQRES 32 A 562 VAL ARG TRP GLY THR THR ILE LEU PRO GLY GLN ALA ILE SEQRES 33 A 562 THR TRP ASP HIS LEU TYR ALA TYR THR GLY PHE THR TYR SEQRES 34 A 562 PRO GLU LEU TYR LEU PHE TYR LEU ARG GLY ALA GLN ILE SEQRES 35 A 562 LYS ALA VAL LEU GLU ASP ILE ALA SER ASN VAL PHE THR SEQRES 36 A 562 SER ASP PRO PHE TYR GLN GLN GLY GLY ASP VAL SER ARG SEQRES 37 A 562 VAL PHE GLY LEU ARG TYR VAL LEU ASP PRO ASP ALA PRO SEQRES 38 A 562 THR GLY GLU ARG VAL ARG GLU VAL GLU VAL GLY GLY ARG SEQRES 39 A 562 PRO LEU ASP PRO ASN ARG ARG TYR LEU ALA ALA ALA TYR SEQRES 40 A 562 GLY GLY ARG LEU GLN ARG VAL GLY GLU ALA LYS PRO GLY SEQRES 41 A 562 TYR GLU PRO ARG PRO ILE TYR GLU VAL LEU ALA GLU TYR SEQRES 42 A 562 LEU ARG SER VAL GLY ARG VAL ARG VAL ARG PRO GLU PRO SEQRES 43 A 562 ASN VAL LYS VAL ILE GLY ARG ASN TYR ARG LEU PRO GLU SEQRES 44 A 562 VAL THR GLY HET TBU A1573 5 HET TBU A1574 5 HET TBU A1575 5 HET TBU A1576 5 HET MN A1577 1 HET MN A1578 1 HET THJ A1579 5 HETNAM TBU TERTIARY-BUTYL ALCOHOL HETNAM MN MANGANESE (II) ION HETNAM THJ THIOSULFATE HETSYN TBU 2-METHYL-2-PROPANOL FORMUL 2 TBU 4(C4 H10 O) FORMUL 6 MN 2(MN 2+) FORMUL 8 THJ O3 S2 2- FORMUL 9 HOH *439(H2 O) HELIX 1 1 PRO A 66 MET A 70 5 5 HELIX 2 2 THR A 77 GLY A 86 1 10 HELIX 3 3 THR A 91 SER A 98 1 8 HELIX 4 4 ASP A 101 GLY A 110 1 10 HELIX 5 5 GLY A 114 GLU A 132 1 19 HELIX 6 6 SER A 148 THR A 154 1 7 HELIX 7 7 GLY A 156 GLY A 167 1 12 HELIX 8 8 HIS A 174 LEU A 179 5 6 HELIX 9 9 GLY A 180 PHE A 191 1 12 HELIX 10 10 TYR A 232 HIS A 237 1 6 HELIX 11 11 PRO A 238 GLU A 243 5 6 HELIX 12 12 ASP A 250 GLU A 264 1 15 HELIX 13 13 GLY A 276 GLU A 285 1 10 HELIX 14 14 ALA A 347 LEU A 350 5 4 HELIX 15 15 ALA A 353 ALA A 365 1 13 HELIX 16 16 HIS A 367 THR A 373 1 7 HELIX 17 17 SER A 390 TYR A 404 1 15 HELIX 18 18 THR A 428 GLY A 437 1 10 HELIX 19 19 GLY A 450 PHE A 465 1 16 HELIX 20 20 ASP A 468 GLN A 472 5 5 HELIX 21 21 ARG A 521 GLY A 526 5 6 HELIX 22 22 ILE A 537 GLY A 549 1 13 SHEET 1 AA 6 GLU A 194 PHE A 195 0 SHEET 2 AA 6 HIS A 170 MET A 171 1 N MET A 171 O GLU A 194 SHEET 3 AA 6 LYS A 135 ASP A 140 1 N ASP A 140 O HIS A 170 SHEET 4 AA 6 ALA A 40 PHE A 45 1 O THR A 41 N LEU A 137 SHEET 5 AA 6 ALA A 322 TRP A 331 -1 O MET A 324 N TYR A 44 SHEET 6 AA 6 GLY A 334 PRO A 344 -1 O GLY A 334 N TRP A 331 SHEET 1 AB 2 VAL A 201 ASP A 202 0 SHEET 2 AB 2 LEU A 245 SER A 246 -1 O SER A 246 N VAL A 201 SHEET 1 AC 6 TYR A 213 VAL A 218 0 SHEET 2 AC 6 TYR A 221 ALA A 228 -1 O TYR A 221 N VAL A 218 SHEET 3 AC 6 ALA A 268 SER A 273 1 O ALA A 268 N ALA A 224 SHEET 4 AC 6 LEU A 292 SER A 295 1 O LEU A 292 N LEU A 271 SHEET 5 AC 6 THR A 311 ALA A 315 1 O TRP A 312 N ILE A 293 SHEET 6 AC 6 TRP A 306 VAL A 308 -1 O TRP A 306 N ILE A 313 SHEET 1 AD 3 ALA A 426 ILE A 427 0 SHEET 2 AD 3 ALA A 376 SER A 378 -1 O ALA A 376 N ILE A 427 SHEET 3 AD 3 ARG A 550 VAL A 551 1 N VAL A 551 O VAL A 377 SHEET 1 AE 5 ARG A 479 PHE A 481 0 SHEET 2 AE 5 VAL A 409 SER A 412 -1 O VAL A 410 N PHE A 481 SHEET 3 AE 5 ARG A 512 TYR A 518 1 O ALA A 516 N PHE A 411 SHEET 4 AE 5 GLU A 442 ARG A 449 -1 O TYR A 444 N ALA A 517 SHEET 5 AE 5 ARG A 535 PRO A 536 -1 O ARG A 535 N LEU A 443 SHEET 1 AF 5 ARG A 479 PHE A 481 0 SHEET 2 AF 5 VAL A 409 SER A 412 -1 O VAL A 410 N PHE A 481 SHEET 3 AF 5 ARG A 512 TYR A 518 1 O ALA A 516 N PHE A 411 SHEET 4 AF 5 GLU A 442 ARG A 449 -1 O TYR A 444 N ALA A 517 SHEET 5 AF 5 GLU A 527 ALA A 528 -1 O GLU A 527 N TYR A 447 SHEET 1 AG 4 ARG A 505 PRO A 506 0 SHEET 2 AG 4 VAL A 497 VAL A 502 -1 O VAL A 502 N ARG A 505 SHEET 3 AG 4 LEU A 483 LEU A 487 -1 O ARG A 484 N GLU A 501 SHEET 4 AG 4 VAL A 559 VAL A 561 1 O LYS A 560 N LEU A 487 LINK OD1 ASP A 47 MN MN A1577 1555 1555 2.12 LINK NE2 HIS A 49 MN MN A1577 1555 1555 2.23 LINK OD2 ASP A 143 MN MN A1577 1555 1555 2.30 LINK OD2 ASP A 143 MN MN A1578 1555 1555 2.23 LINK ND1 HIS A 174 MN MN A1578 1555 1555 2.22 LINK NE2 HIS A 274 MN MN A1578 1555 1555 2.21 LINK ND1 HIS A 297 MN MN A1578 1555 1555 2.32 LINK NE2 HIS A 299 MN MN A1577 1555 1555 2.27 LINK MN MN A1577 O2 THJ A1579 1555 1555 2.27 LINK MN MN A1577 O HOH A2438 1555 1555 1.97 LINK MN MN A1578 O1 THJ A1579 1555 1555 2.37 LINK MN MN A1578 O HOH A2438 1555 1555 2.32 CISPEP 1 GLN A 472 GLN A 473 0 -2.28 SITE 1 AC1 4 ALA A 455 SER A 547 HOH A2327 HOH A2439 SITE 1 AC2 3 TRP A 331 ALA A 336 HIS A 349 SITE 1 AC3 3 GLU A 157 GLU A 186 HOH A2128 SITE 1 AC4 1 TYR A 433 SITE 1 AC5 7 ASP A 47 HIS A 49 ASP A 143 HIS A 299 SITE 2 AC5 7 MN A1578 THJ A1579 HOH A2438 SITE 1 AC6 7 ASP A 143 HIS A 174 HIS A 274 HIS A 297 SITE 2 AC6 7 MN A1577 THJ A1579 HOH A2438 SITE 1 AC7 12 HIS A 49 ASP A 143 HIS A 174 TRP A 175 SITE 2 AC7 12 HIS A 297 HIS A 299 VAL A 415 ARG A 416 SITE 3 AC7 12 TRP A 417 MN A1577 MN A1578 HOH A2438 CRYST1 70.801 86.738 95.383 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014124 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011529 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010484 0.00000