HEADER OXIDOREDUCTASE 27-MAR-09 2WDW TITLE THE NATIVE CRYSTAL STRUCTURE OF THE PRIMARY HEXOSE OXIDASE (DBV29) IN TITLE 2 ANTIBIOTIC A40926 BIOSYNTHESIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE HEXOSE OXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PRIMARY HEXOSE OXIDASE; COMPND 5 EC: 1.1.3.13; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NONOMURAEA SP. ATCC 39727; SOURCE 3 ORGANISM_TAXID: 93944; SOURCE 4 ATCC: 39727; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS FAD, FLAVOPROTEIN, HEXOSE OXIDASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.-C.LIU,Y.-S.LI,S.-Y.LYU,Y.-H.CHEN,H.-C.CHAN,C.-J.HUANG,Y.-T.HUANG, AUTHOR 2 G.-H.CHEN,C.-C.CHOU,M.-D.TSAI,T.-L.LI REVDAT 4 13-DEC-23 2WDW 1 REMARK LINK REVDAT 3 27-APR-11 2WDW 1 JRNL REVDAT 2 13-APR-11 2WDW 1 JRNL REVDAT 1 07-APR-10 2WDW 0 JRNL AUTH Y.-C.LIU,Y.-S.LI,S.-Y.LYU,L.-J.HSU,Y.-H.CHEN,Y.-T.HUANG, JRNL AUTH 2 H.-C.CHAN,C.-J.HUANG,G.-H.CHEN,C.-C.CHOU,M.-D.TSAI,T.-L.LI JRNL TITL INTERCEPTION OF TEICOPLANIN OXIDATION INTERMEDIATES YIELDS JRNL TITL 2 NEW ANTIMICROBIAL SCAFFOLDS JRNL REF NAT.CHEM.BIOL. V. 7 304 2011 JRNL REFN ISSN 1552-4450 JRNL PMID 21478878 JRNL DOI 10.1038/NCHEMBIO.556 REMARK 2 REMARK 2 RESOLUTION. 3.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 16838 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 869 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.21 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.29 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1170 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7710 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 67 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.96000 REMARK 3 B22 (A**2) : 0.96000 REMARK 3 B33 (A**2) : -1.44000 REMARK 3 B12 (A**2) : 0.48000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.658 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.458 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.218 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.882 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.830 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8049 ; 0.005 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11004 ; 0.837 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 994 ; 4.179 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 362 ;34.188 ;23.260 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1190 ;15.690 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 62 ;11.980 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1164 ; 0.053 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6316 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3884 ; 0.152 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5386 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 228 ; 0.098 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.098 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.085 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5048 ; 0.125 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7972 ; 0.225 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3489 ; 0.163 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3032 ; 0.295 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2WDW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1290039229. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9731 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17824 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.210 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.80 REMARK 200 R MERGE FOR SHELL (I) : 0.16000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 17.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2IPI REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 30% PEG REMARK 280 550 MME, 0.05M CALCIUM CHLORIDE, 0.1M BIS TRIS, PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 263.48733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 526.97467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 395.23100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 658.71833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 131.74367 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 263.48733 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 526.97467 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 658.71833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 395.23100 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 131.74367 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLY A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 ALA A 7 REMARK 465 ASP A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 SER A 11 REMARK 465 ALA A 12 REMARK 465 GLY A 13 REMARK 465 ALA A 14 REMARK 465 SER A 15 REMARK 465 SER A 16 REMARK 465 THR A 17 REMARK 465 ARG A 18 REMARK 465 PRO A 19 REMARK 465 GLU A 20 REMARK 465 LEU A 21 REMARK 465 ARG A 22 REMARK 465 GLY A 23 REMARK 465 GLU A 24 REMARK 465 ARG A 25 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 GLY B 3 REMARK 465 GLY B 4 REMARK 465 THR B 5 REMARK 465 GLY B 6 REMARK 465 ALA B 7 REMARK 465 ASP B 8 REMARK 465 ALA B 9 REMARK 465 ALA B 10 REMARK 465 SER B 11 REMARK 465 ALA B 12 REMARK 465 GLY B 13 REMARK 465 ALA B 14 REMARK 465 SER B 15 REMARK 465 SER B 16 REMARK 465 THR B 17 REMARK 465 ARG B 18 REMARK 465 PRO B 19 REMARK 465 GLU B 20 REMARK 465 LEU B 21 REMARK 465 ARG B 22 REMARK 465 GLY B 23 REMARK 465 GLU B 24 REMARK 465 ARG B 25 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 95 39.19 -86.63 REMARK 500 HIS A 206 40.35 -106.37 REMARK 500 THR A 214 39.33 -91.98 REMARK 500 ASN A 220 -51.15 -121.57 REMARK 500 ASP A 321 32.15 -94.97 REMARK 500 ARG A 357 77.90 -69.86 REMARK 500 MET A 390 58.42 -145.79 REMARK 500 ASN A 408 32.78 -79.83 REMARK 500 TYR A 453 36.25 -98.29 REMARK 500 THR A 456 44.12 -109.02 REMARK 500 PRO A 462 121.62 -39.53 REMARK 500 TYR A 473 73.47 -112.62 REMARK 500 LYS A 496 -126.09 51.25 REMARK 500 HIS B 91 36.49 -93.32 REMARK 500 THR B 214 38.13 -96.90 REMARK 500 ASN B 220 -66.21 -109.27 REMARK 500 MET B 304 113.70 -161.97 REMARK 500 ASP B 316 105.37 -57.84 REMARK 500 MET B 390 58.60 -144.48 REMARK 500 PRO B 462 117.68 -35.74 REMARK 500 ASP B 467 55.30 -145.81 REMARK 500 TYR B 473 76.05 -112.67 REMARK 500 THR B 485 61.00 -104.39 REMARK 500 LYS B 496 -124.90 53.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WDX RELATED DB: PDB REMARK 900 THE COMPLEXED CRYSTAL STRUCTURE OF THE PRIMARY HEXOSE OXIDASE REMARK 900 (DBV29) IN ANTIBIOTIC A40926 BIOSYNTHESIS DBREF 2WDW A 1 523 UNP Q7WZ62 Q7WZ62_9ACTO 1 523 DBREF 2WDW B 1 523 UNP Q7WZ62 Q7WZ62_9ACTO 1 523 SEQRES 1 A 523 MET THR GLY GLY THR GLY ALA ASP ALA ALA SER ALA GLY SEQRES 2 A 523 ALA SER SER THR ARG PRO GLU LEU ARG GLY GLU ARG CYS SEQRES 3 A 523 LEU PRO PRO ALA GLY PRO VAL LYS VAL THR PRO ASP ASP SEQRES 4 A 523 PRO ARG TYR LEU ASN LEU LYS LEU ARG GLY ALA ASN SER SEQRES 5 A 523 ARG PHE ASN GLY GLU PRO ASP TYR ILE HIS LEU VAL GLY SEQRES 6 A 523 SER THR GLN GLN VAL ALA ASP ALA VAL GLU GLU THR VAL SEQRES 7 A 523 ARG THR GLY LYS ARG VAL ALA VAL ARG SER GLY GLY HIS SEQRES 8 A 523 CYS PHE GLU ASP PHE VAL ASP ASN PRO ASP VAL LYS VAL SEQRES 9 A 523 ILE ILE ASP MET SER LEU LEU THR GLU ILE ALA TYR ASP SEQRES 10 A 523 PRO SER MET ASN ALA PHE LEU ILE GLU PRO GLY ASN THR SEQRES 11 A 523 LEU SER GLU VAL TYR GLU LYS LEU TYR LEU GLY TRP ASN SEQRES 12 A 523 VAL THR ILE PRO GLY GLY VAL CYS GLY GLY VAL GLY VAL SEQRES 13 A 523 GLY GLY HIS ILE CYS GLY GLY GLY TYR GLY PRO LEU SER SEQRES 14 A 523 ARG GLN PHE GLY SER VAL VAL ASP TYR LEU TYR ALA VAL SEQRES 15 A 523 GLU VAL VAL VAL VAL ASN LYS GLN GLY LYS ALA ARG VAL SEQRES 16 A 523 ILE VAL ALA THR ARG GLU ARG ASP ASP PRO HIS HIS ASP SEQRES 17 A 523 LEU TRP TRP ALA HIS THR GLY GLY GLY GLY GLY ASN PHE SEQRES 18 A 523 GLY VAL VAL THR LYS TYR TRP MET ARG VAL PRO GLU ASP SEQRES 19 A 523 VAL GLY ARG ASN PRO GLU ARG LEU LEU PRO LYS PRO PRO SEQRES 20 A 523 ALA THR LEU LEU THR SER THR VAL THR PHE ASP TRP ALA SEQRES 21 A 523 GLY MET THR GLU ALA ALA PHE SER ARG LEU LEU ARG ASN SEQRES 22 A 523 HIS GLY GLU TRP TYR GLU ARG ASN SER GLY PRO ASP SER SEQRES 23 A 523 PRO TYR THR GLY LEU TRP SER GLN LEU MET ILE GLY ASN SEQRES 24 A 523 GLU VAL PRO GLY MET GLY GLU SER GLY PHE MET MET PRO SEQRES 25 A 523 ILE GLN VAL ASP ALA THR ARG PRO ASP ALA ARG ARG LEU SEQRES 26 A 523 LEU ASP ALA HIS ILE GLU ALA VAL ILE ASP GLY VAL PRO SEQRES 27 A 523 PRO ALA GLU VAL PRO GLU PRO ILE GLU GLN ARG TRP LEU SEQRES 28 A 523 ALA SER THR PRO GLY ARG GLY GLY ARG GLY PRO ALA SER SEQRES 29 A 523 LYS THR LYS ALA GLY TYR LEU ARG LYS ARG LEU THR ASP SEQRES 30 A 523 ARG GLN ILE GLN ALA VAL TYR GLU ASN MET THR HIS MET SEQRES 31 A 523 ASP GLY ILE ASP TYR GLY ALA VAL TRP LEU ILE GLY TYR SEQRES 32 A 523 GLY GLY LYS VAL ASN THR VAL ASP PRO ALA ALA THR ALA SEQRES 33 A 523 LEU PRO GLN ARG ASP ALA ILE LEU LYS VAL ASN TYR ILE SEQRES 34 A 523 THR GLY TRP ALA ASN PRO GLY ASN GLU ALA LYS HIS LEU SEQRES 35 A 523 THR TRP VAL ARG LYS LEU TYR ALA ASP VAL TYR ALA GLU SEQRES 36 A 523 THR GLY GLY VAL PRO VAL PRO ASN ASP VAL SER ASP GLY SEQRES 37 A 523 ALA TYR ILE ASN TYR PRO ASP SER ASP LEU ALA ASP PRO SEQRES 38 A 523 GLY LEU ASN THR SER GLY VAL PRO TRP HIS ASP LEU TYR SEQRES 39 A 523 TYR LYS GLY ASN HIS PRO ARG LEU ARG LYS VAL LYS ALA SEQRES 40 A 523 ALA TYR ASP PRO ARG ASN HIS PHE HIS HIS ALA LEU SER SEQRES 41 A 523 ILE ARG PRO SEQRES 1 B 523 MET THR GLY GLY THR GLY ALA ASP ALA ALA SER ALA GLY SEQRES 2 B 523 ALA SER SER THR ARG PRO GLU LEU ARG GLY GLU ARG CYS SEQRES 3 B 523 LEU PRO PRO ALA GLY PRO VAL LYS VAL THR PRO ASP ASP SEQRES 4 B 523 PRO ARG TYR LEU ASN LEU LYS LEU ARG GLY ALA ASN SER SEQRES 5 B 523 ARG PHE ASN GLY GLU PRO ASP TYR ILE HIS LEU VAL GLY SEQRES 6 B 523 SER THR GLN GLN VAL ALA ASP ALA VAL GLU GLU THR VAL SEQRES 7 B 523 ARG THR GLY LYS ARG VAL ALA VAL ARG SER GLY GLY HIS SEQRES 8 B 523 CYS PHE GLU ASP PHE VAL ASP ASN PRO ASP VAL LYS VAL SEQRES 9 B 523 ILE ILE ASP MET SER LEU LEU THR GLU ILE ALA TYR ASP SEQRES 10 B 523 PRO SER MET ASN ALA PHE LEU ILE GLU PRO GLY ASN THR SEQRES 11 B 523 LEU SER GLU VAL TYR GLU LYS LEU TYR LEU GLY TRP ASN SEQRES 12 B 523 VAL THR ILE PRO GLY GLY VAL CYS GLY GLY VAL GLY VAL SEQRES 13 B 523 GLY GLY HIS ILE CYS GLY GLY GLY TYR GLY PRO LEU SER SEQRES 14 B 523 ARG GLN PHE GLY SER VAL VAL ASP TYR LEU TYR ALA VAL SEQRES 15 B 523 GLU VAL VAL VAL VAL ASN LYS GLN GLY LYS ALA ARG VAL SEQRES 16 B 523 ILE VAL ALA THR ARG GLU ARG ASP ASP PRO HIS HIS ASP SEQRES 17 B 523 LEU TRP TRP ALA HIS THR GLY GLY GLY GLY GLY ASN PHE SEQRES 18 B 523 GLY VAL VAL THR LYS TYR TRP MET ARG VAL PRO GLU ASP SEQRES 19 B 523 VAL GLY ARG ASN PRO GLU ARG LEU LEU PRO LYS PRO PRO SEQRES 20 B 523 ALA THR LEU LEU THR SER THR VAL THR PHE ASP TRP ALA SEQRES 21 B 523 GLY MET THR GLU ALA ALA PHE SER ARG LEU LEU ARG ASN SEQRES 22 B 523 HIS GLY GLU TRP TYR GLU ARG ASN SER GLY PRO ASP SER SEQRES 23 B 523 PRO TYR THR GLY LEU TRP SER GLN LEU MET ILE GLY ASN SEQRES 24 B 523 GLU VAL PRO GLY MET GLY GLU SER GLY PHE MET MET PRO SEQRES 25 B 523 ILE GLN VAL ASP ALA THR ARG PRO ASP ALA ARG ARG LEU SEQRES 26 B 523 LEU ASP ALA HIS ILE GLU ALA VAL ILE ASP GLY VAL PRO SEQRES 27 B 523 PRO ALA GLU VAL PRO GLU PRO ILE GLU GLN ARG TRP LEU SEQRES 28 B 523 ALA SER THR PRO GLY ARG GLY GLY ARG GLY PRO ALA SER SEQRES 29 B 523 LYS THR LYS ALA GLY TYR LEU ARG LYS ARG LEU THR ASP SEQRES 30 B 523 ARG GLN ILE GLN ALA VAL TYR GLU ASN MET THR HIS MET SEQRES 31 B 523 ASP GLY ILE ASP TYR GLY ALA VAL TRP LEU ILE GLY TYR SEQRES 32 B 523 GLY GLY LYS VAL ASN THR VAL ASP PRO ALA ALA THR ALA SEQRES 33 B 523 LEU PRO GLN ARG ASP ALA ILE LEU LYS VAL ASN TYR ILE SEQRES 34 B 523 THR GLY TRP ALA ASN PRO GLY ASN GLU ALA LYS HIS LEU SEQRES 35 B 523 THR TRP VAL ARG LYS LEU TYR ALA ASP VAL TYR ALA GLU SEQRES 36 B 523 THR GLY GLY VAL PRO VAL PRO ASN ASP VAL SER ASP GLY SEQRES 37 B 523 ALA TYR ILE ASN TYR PRO ASP SER ASP LEU ALA ASP PRO SEQRES 38 B 523 GLY LEU ASN THR SER GLY VAL PRO TRP HIS ASP LEU TYR SEQRES 39 B 523 TYR LYS GLY ASN HIS PRO ARG LEU ARG LYS VAL LYS ALA SEQRES 40 B 523 ALA TYR ASP PRO ARG ASN HIS PHE HIS HIS ALA LEU SER SEQRES 41 B 523 ILE ARG PRO HET FAD A 601 53 HET FAD B 601 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 HOH *67(H2 O) HELIX 1 1 ARG A 41 LEU A 47 1 7 HELIX 2 2 SER A 66 GLY A 81 1 16 HELIX 3 3 THR A 130 ASN A 143 1 14 HELIX 4 4 GLY A 155 GLY A 162 1 8 HELIX 5 5 LEU A 168 GLY A 173 1 6 HELIX 6 6 SER A 174 ASP A 177 5 4 HELIX 7 7 HIS A 206 HIS A 213 1 8 HELIX 8 8 ASN A 238 LEU A 242 5 5 HELIX 9 9 TRP A 259 MET A 262 5 4 HELIX 10 10 THR A 263 ARG A 280 1 18 HELIX 11 11 ASP A 321 ILE A 334 1 14 HELIX 12 12 THR A 376 HIS A 389 1 14 HELIX 13 13 GLY A 404 VAL A 410 5 7 HELIX 14 14 ASN A 434 GLY A 436 5 3 HELIX 15 15 ASN A 437 TYR A 453 1 17 HELIX 16 16 ALA A 454 GLY A 457 5 4 HELIX 17 17 ASP A 475 ALA A 479 5 5 HELIX 18 18 PRO A 489 LYS A 496 1 8 HELIX 19 19 ASN A 498 ASP A 510 1 13 HELIX 20 20 ARG B 41 LEU B 47 1 7 HELIX 21 21 SER B 66 GLY B 81 1 16 HELIX 22 22 THR B 130 ASN B 143 1 14 HELIX 23 23 GLY B 155 GLY B 162 1 8 HELIX 24 24 LEU B 168 GLY B 173 1 6 HELIX 25 25 SER B 174 ASP B 177 5 4 HELIX 26 26 HIS B 206 HIS B 213 1 8 HELIX 27 27 ASN B 238 LEU B 242 5 5 HELIX 28 28 TRP B 259 MET B 262 5 4 HELIX 29 29 THR B 263 ASN B 281 1 19 HELIX 30 30 SER B 286 THR B 289 5 4 HELIX 31 31 ASP B 321 ILE B 334 1 14 HELIX 32 32 THR B 376 HIS B 389 1 14 HELIX 33 33 GLY B 404 VAL B 410 5 7 HELIX 34 34 ASN B 434 GLY B 436 5 3 HELIX 35 35 ASN B 437 TYR B 453 1 17 HELIX 36 36 ALA B 454 GLY B 457 5 4 HELIX 37 37 ASP B 475 ALA B 479 5 5 HELIX 38 38 PRO B 489 TYR B 495 1 7 HELIX 39 39 ASN B 498 ASP B 510 1 13 SHEET 1 AA 4 VAL A 33 VAL A 35 0 SHEET 2 AA 4 TYR A 60 LEU A 63 -1 O ILE A 61 N VAL A 35 SHEET 3 AA 4 VAL A 104 ASP A 107 1 O ILE A 105 N HIS A 62 SHEET 4 AA 4 VAL A 84 ARG A 87 1 O ALA A 85 N ILE A 106 SHEET 1 AB 5 ILE A 114 ASP A 117 0 SHEET 2 AB 5 ALA A 122 ILE A 125 -1 O ALA A 122 N ASP A 117 SHEET 3 AB 5 VAL A 223 MET A 229 -1 O TYR A 227 N ILE A 125 SHEET 4 AB 5 LEU A 179 VAL A 187 -1 N TYR A 180 O TRP A 228 SHEET 5 AB 5 ALA A 193 THR A 199 -1 O ARG A 194 N VAL A 186 SHEET 1 AC 3 ALA A 340 GLU A 341 0 SHEET 2 AC 3 THR A 249 PHE A 257 -1 O THR A 256 N GLU A 341 SHEET 3 AC 3 ILE A 346 ARG A 349 -1 O ILE A 346 N THR A 252 SHEET 1 AD 7 ALA A 340 GLU A 341 0 SHEET 2 AD 7 THR A 249 PHE A 257 -1 O THR A 256 N GLU A 341 SHEET 3 AD 7 PHE A 309 ASP A 316 -1 O PHE A 309 N PHE A 257 SHEET 4 AD 7 LEU A 291 GLY A 298 -1 O TRP A 292 N GLN A 314 SHEET 5 AD 7 TYR A 395 GLY A 402 -1 O VAL A 398 N ILE A 297 SHEET 6 AD 7 LEU A 424 TRP A 432 -1 O LYS A 425 N ILE A 401 SHEET 7 AD 7 ALA A 363 LEU A 371 -1 O ALA A 363 N TRP A 432 SHEET 1 BA 4 VAL B 33 VAL B 35 0 SHEET 2 BA 4 TYR B 60 LEU B 63 -1 O ILE B 61 N VAL B 35 SHEET 3 BA 4 VAL B 104 ASP B 107 1 O ILE B 105 N HIS B 62 SHEET 4 BA 4 VAL B 84 ARG B 87 1 O ALA B 85 N ILE B 106 SHEET 1 BB 5 ILE B 114 ASP B 117 0 SHEET 2 BB 5 ALA B 122 ILE B 125 -1 O ALA B 122 N ASP B 117 SHEET 3 BB 5 VAL B 223 MET B 229 -1 O TYR B 227 N ILE B 125 SHEET 4 BB 5 LEU B 179 VAL B 187 -1 N TYR B 180 O TRP B 228 SHEET 5 BB 5 ALA B 193 THR B 199 -1 O ARG B 194 N VAL B 186 SHEET 1 BC 3 ALA B 340 GLU B 341 0 SHEET 2 BC 3 THR B 249 PHE B 257 -1 O THR B 256 N GLU B 341 SHEET 3 BC 3 ILE B 346 ARG B 349 -1 O ILE B 346 N THR B 252 SHEET 1 BD 7 ALA B 340 GLU B 341 0 SHEET 2 BD 7 THR B 249 PHE B 257 -1 O THR B 256 N GLU B 341 SHEET 3 BD 7 PHE B 309 ASP B 316 -1 O PHE B 309 N PHE B 257 SHEET 4 BD 7 LEU B 291 GLY B 298 -1 O TRP B 292 N GLN B 314 SHEET 5 BD 7 TYR B 395 GLY B 402 -1 O VAL B 398 N ILE B 297 SHEET 6 BD 7 LEU B 424 TRP B 432 -1 O LYS B 425 N ILE B 401 SHEET 7 BD 7 ALA B 363 LEU B 371 -1 O ALA B 363 N TRP B 432 SSBOND 1 CYS A 26 CYS B 26 1555 1555 2.04 LINK ND1 HIS B 91 C8M FAD B 601 1555 1555 1.62 LINK SG CYS B 151 C6 FAD B 601 1555 1555 1.62 SITE 1 AC1 23 VAL A 86 ARG A 87 SER A 88 GLY A 89 SITE 2 AC1 23 GLY A 90 HIS A 91 CYS A 92 PHE A 93 SITE 3 AC1 23 PHE A 96 GLY A 149 VAL A 150 CYS A 151 SITE 4 AC1 23 VAL A 154 GLY A 155 GLY A 157 GLY A 158 SITE 5 AC1 23 HIS A 159 TYR A 165 GLY A 218 GLY A 219 SITE 6 AC1 23 VAL A 224 TYR A 470 ASN A 472 SITE 1 AC2 24 VAL B 86 ARG B 87 SER B 88 GLY B 89 SITE 2 AC2 24 GLY B 90 HIS B 91 CYS B 92 PHE B 96 SITE 3 AC2 24 VAL B 97 GLY B 149 VAL B 150 CYS B 151 SITE 4 AC2 24 VAL B 154 GLY B 155 GLY B 157 GLY B 158 SITE 5 AC2 24 HIS B 159 GLY B 164 TYR B 165 GLY B 218 SITE 6 AC2 24 GLY B 219 VAL B 224 TYR B 470 ASN B 472 CRYST1 66.092 66.092 790.462 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015130 0.008736 0.000000 0.00000 SCALE2 0.000000 0.017471 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001265 0.00000