HEADER HYDROLASE 27-MAR-09 2WE1 TITLE EBV DUTPASE MUTANT ASP131ASN WITH BOUND DUMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DUTPASE, DUTP PYROPHOSPHATASE; COMPND 5 EC: 3.6.1.23; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 4; SOURCE 3 ORGANISM_COMMON: EPSTEIN-BARR VIRUS; SOURCE 4 ORGANISM_TAXID: 10377; SOURCE 5 STRAIN: B95-8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPROEX HTB KEYWDS PYROPHOSPHATASE, EPSTEIN-BARR VIRUS, NUCLEOTIDE METABOLISM, DUTPASE, KEYWDS 2 MONOMER, HYDROLASE, HERPES VIRUS EXPDTA X-RAY DIFFRACTION AUTHOR L.FREEMAN,M.BUISSON,N.TARBOURIECH,W.P.BURMEISTER REVDAT 4 13-DEC-23 2WE1 1 REMARK REVDAT 3 15-SEP-09 2WE1 1 JRNL DBREF REVDAT 2 21-JUL-09 2WE1 1 JRNL REVDAT 1 07-JUL-09 2WE1 0 JRNL AUTH L.FREEMAN,M.BUISSON,N.TARBOURIECH,A.VAN DER HEYDEN,P.LABBE, JRNL AUTH 2 W.P.BURMEISTER JRNL TITL THE FLEXIBLE MOTIF V OF EPSTEIN-BARR VIRUS DEOXYURIDINE JRNL TITL 2 5'-TRIPHOSPHATE PYROPHOSPHATASE IS ESSENTIAL FOR CATALYSIS. JRNL REF J.BIOL.CHEM. V. 284 25280 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19586911 JRNL DOI 10.1074/JBC.M109.019315 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.TARBOURIECH,M.BUISSON,J.M.SEIGNEURIN,S.CUSACK, REMARK 1 AUTH 2 W.P.BURMEISTER REMARK 1 TITL THE MONOMERIC DUTPASE FROM EPSTEIN-BARR VIRUS MIMICS REMARK 1 TITL 2 TRIMERIC DUTPASES. REMARK 1 REF STRUCTURE V. 13 1299 2005 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 16154087 REMARK 1 DOI 10.1016/J.STR.2005.06.009 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 22791 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1229 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1688 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1936 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 225 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : -0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.144 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.142 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.081 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2055 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2808 ; 1.632 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 252 ; 5.993 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 83 ;29.468 ;21.566 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 333 ;13.026 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;18.780 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 316 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1534 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 901 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1360 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 210 ; 0.172 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 84 ; 0.306 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.202 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1274 ; 1.059 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2031 ; 1.716 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 870 ; 2.668 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 773 ; 4.090 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2WE1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1290039236. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24052 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.380 REMARK 200 RESOLUTION RANGE LOW (A) : 46.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.450 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.43 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.160 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2BSY REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3 M AMMONIUM SULFATE, 25 % PEG 3350, REMARK 280 0.1 M HEPES PH 7, 10 MM DUTP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.81200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.53650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.42950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.53650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.81200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.42950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASP 131 TO ASN REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -7 REMARK 465 ALA A -6 REMARK 465 MET A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 GLY A -2 REMARK 465 ILE A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ALA A 3 REMARK 465 GLU A 117 REMARK 465 GLU A 118 REMARK 465 ASP A 119 REMARK 465 LYS A 120 REMARK 465 HIS A 125 REMARK 465 PRO A 126 REMARK 465 GLN A 127 REMARK 465 TYR A 128 REMARK 465 GLY A 257 REMARK 465 ASP A 258 REMARK 465 SER A 259 REMARK 465 GLY A 260 REMARK 465 LEU A 261 REMARK 465 SER A 262 REMARK 465 GLU A 263 REMARK 465 ALA A 264 REMARK 465 LEU A 265 REMARK 465 GLU A 266 REMARK 465 GLY A 267 REMARK 465 ARG A 268 REMARK 465 GLN A 269 REMARK 465 GLY A 270 REMARK 465 ARG A 271 REMARK 465 GLY A 272 REMARK 465 PHE A 273 REMARK 465 GLY A 274 REMARK 465 SER A 275 REMARK 465 SER A 276 REMARK 465 GLY A 277 REMARK 465 GLN A 278 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2144 O HOH A 2179 1.90 REMARK 500 OG1 THR A 153 O HOH A 2126 2.16 REMARK 500 O HOH A 2189 O HOH A 2190 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 13 107.98 -167.25 REMARK 500 SER A 100 -4.87 77.61 REMARK 500 TYR A 208 -9.05 75.37 REMARK 500 PRO A 228 0.12 -66.96 REMARK 500 VAL A 234 -63.53 -97.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMP A 1257 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1258 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1259 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1260 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BSY RELATED DB: PDB REMARK 900 EPSTEIN BARR VIRUS DUTPASE REMARK 900 RELATED ID: 2WE0 RELATED DB: PDB REMARK 900 EBV DUTPASE MUTANT CYS4SER REMARK 900 RELATED ID: 2WE2 RELATED DB: PDB REMARK 900 EBV DUTPASE DOUBLE MUTANT GLY78ASP-ASP131SER WITH DUMP REMARK 900 RELATED ID: 2BT1 RELATED DB: PDB REMARK 900 EPSTEIN BARR VIRUS DUTPASE IN COMPLEX WITH A,B-IMINO DUTP REMARK 900 RELATED ID: 2WE3 RELATED DB: PDB REMARK 900 EBV DUTPASE INACTIVE MUTANT DELETED OF MOTIF V DBREF 2WE1 A -7 0 PDB 2WE1 2WE1 -7 0 DBREF 2WE1 A 1 278 UNP P03195 DUT_EBVB9 1 278 SEQADV 2WE1 ASN A 131 UNP P03195 ASP 131 ENGINEERED MUTATION SEQRES 1 A 286 GLY ALA MET GLY SER GLY ILE PRO MET GLU ALA CYS PRO SEQRES 2 A 286 HIS ILE ARG TYR ALA PHE GLN ASN ASP LYS LEU LEU LEU SEQRES 3 A 286 GLN GLN ALA SER VAL GLY ARG LEU THR LEU VAL ASN LYS SEQRES 4 A 286 THR THR ILE LEU LEU ARG PRO MET LYS THR THR THR VAL SEQRES 5 A 286 ASP LEU GLY LEU TYR ALA ARG PRO PRO GLU GLY HIS GLY SEQRES 6 A 286 LEU MET LEU TRP GLY SER THR SER ARG PRO VAL THR SER SEQRES 7 A 286 HIS VAL GLY ILE ILE ASP PRO GLY TYR THR GLY GLU LEU SEQRES 8 A 286 ARG LEU ILE LEU GLN ASN GLN ARG ARG TYR ASN SER THR SEQRES 9 A 286 LEU ARG PRO SER GLU LEU LYS ILE HIS LEU ALA ALA PHE SEQRES 10 A 286 ARG TYR ALA THR PRO GLN MET GLU GLU ASP LYS GLY PRO SEQRES 11 A 286 ILE ASN HIS PRO GLN TYR PRO GLY ASN VAL GLY LEU ASP SEQRES 12 A 286 VAL SER LEU PRO LYS ASP LEU ALA LEU PHE PRO HIS GLN SEQRES 13 A 286 THR VAL SER VAL THR LEU THR VAL PRO PRO PRO SER ILE SEQRES 14 A 286 PRO HIS HIS ARG PRO THR ILE PHE GLY ARG SER GLY LEU SEQRES 15 A 286 ALA MET GLN GLY ILE LEU VAL LYS PRO CYS ARG TRP ARG SEQRES 16 A 286 ARG GLY GLY VAL ASP VAL SER LEU THR ASN PHE SER ASP SEQRES 17 A 286 GLN THR VAL PHE LEU ASN LYS TYR ARG ARG PHE CYS GLN SEQRES 18 A 286 LEU VAL TYR LEU HIS LYS HIS HIS LEU THR SER PHE TYR SEQRES 19 A 286 SER PRO HIS SER ASP ALA GLY VAL LEU GLY PRO ARG SER SEQRES 20 A 286 LEU PHE ARG TRP ALA SER CYS THR PHE GLU GLU VAL PRO SEQRES 21 A 286 SER LEU ALA MET GLY ASP SER GLY LEU SER GLU ALA LEU SEQRES 22 A 286 GLU GLY ARG GLN GLY ARG GLY PHE GLY SER SER GLY GLN HET UMP A1257 20 HET SO4 A1258 5 HET SO4 A1259 5 HET SO4 A1260 5 HETNAM UMP 2'-DEOXYURIDINE 5'-MONOPHOSPHATE HETNAM SO4 SULFATE ION HETSYN UMP DUMP FORMUL 2 UMP C9 H13 N2 O8 P FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 HOH *225(H2 O) HELIX 1 1 ARG A 171 GLN A 177 1 7 HELIX 2 2 PRO A 252 ALA A 255 5 4 SHEET 1 AA 5 VAL A 68 SER A 70 0 SHEET 2 AA 5 LEU A 83 ASN A 89 -1 O GLN A 88 N THR A 69 SHEET 3 AA 5 THR A 41 ARG A 51 -1 O THR A 42 N LEU A 87 SHEET 4 AA 5 ILE A 7 PHE A 11 -1 O ARG A 8 N ARG A 51 SHEET 5 AA 5 PHE A 248 GLU A 250 1 O GLU A 249 N TYR A 9 SHEET 1 AB 5 LEU A 16 SER A 22 0 SHEET 2 AB 5 ARG A 25 ASN A 30 -1 O ARG A 25 N SER A 22 SHEET 3 AB 5 LYS A 103 ALA A 112 -1 O ILE A 104 N LEU A 28 SHEET 4 AB 5 HIS A 56 SER A 63 -1 O GLY A 57 N PHE A 109 SHEET 5 AB 5 GLY A 73 ILE A 75 -1 O GLY A 73 N LEU A 60 SHEET 1 AC 4 LEU A 16 SER A 22 0 SHEET 2 AC 4 ARG A 25 ASN A 30 -1 O ARG A 25 N SER A 22 SHEET 3 AC 4 LYS A 103 ALA A 112 -1 O ILE A 104 N LEU A 28 SHEET 4 AC 4 ARG A 210 HIS A 218 -1 O TYR A 216 N ALA A 112 SHEET 1 AD 2 ILE A 34 LEU A 36 0 SHEET 2 AD 2 SER A 95 LEU A 97 -1 O SER A 95 N LEU A 36 SHEET 1 AE 2 LEU A 142 LEU A 144 0 SHEET 2 AE 2 VAL A 203 LEU A 205 -1 O VAL A 203 N LEU A 144 SHEET 1 AF 3 GLN A 148 LEU A 154 0 SHEET 2 AF 3 VAL A 191 ASN A 197 -1 O VAL A 191 N LEU A 154 SHEET 3 AF 3 ILE A 179 VAL A 181 -1 O LEU A 180 N THR A 196 SHEET 1 AG 3 LEU A 222 THR A 223 0 SHEET 2 AG 3 LEU A 240 ARG A 242 -1 O LEU A 240 N THR A 223 SHEET 3 AG 3 SER A 230 ASP A 231 -1 O ASP A 231 N PHE A 241 SSBOND 1 CYS A 4 CYS A 246 1555 1555 2.02 CISPEP 1 GLY A 121 PRO A 122 0 -14.58 SITE 1 AC1 20 LEU A 60 HIS A 71 GLY A 73 ILE A 74 SITE 2 AC1 20 ILE A 75 ASP A 76 TYR A 79 LEU A 83 SITE 3 AC1 20 ARG A 84 ASN A 94 ARG A 171 SER A 172 SITE 4 AC1 20 HOH A2069 HOH A2071 HOH A2088 HOH A2216 SITE 5 AC1 20 HOH A2217 HOH A2218 HOH A2219 HOH A2220 SITE 1 AC2 6 CYS A 184 ARG A 185 ARG A 187 ARG A 238 SITE 2 AC2 6 SER A 239 HOH A2221 SITE 1 AC3 4 HIS A 163 ARG A 165 LYS A 219 HOH A2222 SITE 1 AC4 7 GLN A 19 LYS A 103 HIS A 105 LYS A 140 SITE 2 AC4 7 HOH A2223 HOH A2224 HOH A2225 CRYST1 55.624 56.859 81.073 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017978 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017587 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012335 0.00000