HEADER LIPID TRANSPORT 02-APR-09 2WEX TITLE CRYSTAL STRUCTURE OF HUMAN APOM IN COMPLEX WITH GLYCEROL 1- MYRISTIC TITLE 2 ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOLIPOPROTEIN M; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 22-188; COMPND 5 SYNONYM: PROTEIN G3A, APO-M, APOM; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS LIPID TRANSPORT, LIGAND-BINDING SPECIFICITY, GLYCOPROTEIN, MYRISTIC KEYWDS 2 ACID, HDL, LIPOCALIN, TRANSPORT, LIPOPROTEINS EXPDTA X-RAY DIFFRACTION AUTHOR M.SEVVANA,J.AHNSTROM,C.EGERER-SIEBER,B.DAHLBACK,Y.A.MULLER REVDAT 3 13-DEC-23 2WEX 1 REMARK REVDAT 2 27-OCT-09 2WEX 1 JRNL REVDAT 1 15-SEP-09 2WEX 0 JRNL AUTH M.SEVVANA,J.AHNSTROM,C.EGERER-SIEBER,H.A.LANGE,B.DAHLBACK, JRNL AUTH 2 Y.A.MULLER JRNL TITL SERENDIPITOUS FATTY ACID BINDING REVEALS THE STRUCTURAL JRNL TITL 2 DETERMINANTS FOR LIGAND RECOGNITION IN APOLIPOPROTEIN M. JRNL REF J.MOL.BIOL. V. 393 920 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19733574 JRNL DOI 10.1016/J.JMB.2009.08.071 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 12429 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 654 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 873 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1253 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 78 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.80000 REMARK 3 B22 (A**2) : -1.80000 REMARK 3 B33 (A**2) : 3.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.186 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.173 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.151 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.127 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1308 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1761 ; 1.800 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 156 ; 7.020 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 58 ;37.487 ;24.138 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 220 ;18.381 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;19.787 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 189 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 975 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 490 ; 0.233 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 852 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 69 ; 0.185 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 41 ; 0.214 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.330 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 825 ; 1.047 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1278 ; 1.527 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 553 ; 2.606 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 483 ; 3.614 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 31 REMARK 3 ORIGIN FOR THE GROUP (A): 26.8407 -8.4971 25.8640 REMARK 3 T TENSOR REMARK 3 T11: 0.0143 T22: 0.1868 REMARK 3 T33: 0.1827 T12: 0.1632 REMARK 3 T13: 0.0156 T23: -0.1570 REMARK 3 L TENSOR REMARK 3 L11: 29.5951 L22: 0.5695 REMARK 3 L33: 3.6876 L12: -3.7980 REMARK 3 L13: 7.7269 L23: -0.6212 REMARK 3 S TENSOR REMARK 3 S11: 0.8535 S12: 1.7266 S13: -2.6379 REMARK 3 S21: 0.0104 S22: -0.4168 S23: -0.5727 REMARK 3 S31: 0.6998 S32: 0.4822 S33: -0.4367 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 36 A 63 REMARK 3 ORIGIN FOR THE GROUP (A): 11.0022 2.4191 27.6842 REMARK 3 T TENSOR REMARK 3 T11: 0.0647 T22: 0.0454 REMARK 3 T33: -0.1274 T12: 0.1247 REMARK 3 T13: 0.0752 T23: 0.0713 REMARK 3 L TENSOR REMARK 3 L11: 8.7782 L22: 1.2502 REMARK 3 L33: 1.4272 L12: 2.8034 REMARK 3 L13: -1.0735 L23: 0.1148 REMARK 3 S TENSOR REMARK 3 S11: 0.0246 S12: 0.5843 S13: 0.1684 REMARK 3 S21: -0.2173 S22: -0.0836 S23: -0.3163 REMARK 3 S31: 0.0646 S32: -0.0935 S33: 0.0590 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 64 A 92 REMARK 3 ORIGIN FOR THE GROUP (A): 2.3736 6.9567 27.6652 REMARK 3 T TENSOR REMARK 3 T11: 0.0156 T22: 0.0026 REMARK 3 T33: -0.1093 T12: 0.1181 REMARK 3 T13: -0.0442 T23: 0.0382 REMARK 3 L TENSOR REMARK 3 L11: 4.1490 L22: 7.2876 REMARK 3 L33: 4.8207 L12: 3.0285 REMARK 3 L13: 1.1111 L23: 2.8920 REMARK 3 S TENSOR REMARK 3 S11: 0.0451 S12: 0.6721 S13: 0.3613 REMARK 3 S21: -0.6295 S22: -0.0107 S23: -0.1045 REMARK 3 S31: 0.0024 S32: -0.2462 S33: -0.0343 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 93 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): 2.7366 4.3411 21.3593 REMARK 3 T TENSOR REMARK 3 T11: 0.0868 T22: 0.0096 REMARK 3 T33: -0.1650 T12: 0.0958 REMARK 3 T13: -0.0603 T23: 0.0551 REMARK 3 L TENSOR REMARK 3 L11: 4.1780 L22: 21.7840 REMARK 3 L33: 8.2439 L12: -1.3631 REMARK 3 L13: -0.9414 L23: 12.3625 REMARK 3 S TENSOR REMARK 3 S11: 0.2096 S12: 0.8256 S13: -0.0124 REMARK 3 S21: -1.6088 S22: 0.0741 S23: -0.5718 REMARK 3 S31: -0.8647 S32: -0.1064 S33: -0.2836 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 109 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1090 -2.0245 16.3910 REMARK 3 T TENSOR REMARK 3 T11: 0.1657 T22: 0.2750 REMARK 3 T33: -0.1819 T12: 0.1596 REMARK 3 T13: 0.0829 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 14.5885 L22: 18.8791 REMARK 3 L33: 24.2881 L12: -10.0309 REMARK 3 L13: -2.0742 L23: -4.1565 REMARK 3 S TENSOR REMARK 3 S11: 0.4461 S12: 1.6499 S13: 0.1548 REMARK 3 S21: -2.2759 S22: -0.0442 S23: -0.3862 REMARK 3 S31: -0.5823 S32: -0.5138 S33: -0.4019 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 119 A 129 REMARK 3 ORIGIN FOR THE GROUP (A): 15.0936 -2.9806 25.1634 REMARK 3 T TENSOR REMARK 3 T11: -0.1939 T22: -0.0164 REMARK 3 T33: -0.1775 T12: 0.0390 REMARK 3 T13: 0.0545 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 10.5745 L22: 9.1356 REMARK 3 L33: 46.7033 L12: -3.4043 REMARK 3 L13: 4.3399 L23: -8.4944 REMARK 3 S TENSOR REMARK 3 S11: 0.0815 S12: 0.5060 S13: -0.3857 REMARK 3 S21: -0.3413 S22: -0.2035 S23: -0.3614 REMARK 3 S31: -0.2053 S32: 1.9112 S33: 0.1220 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 130 A 167 REMARK 3 ORIGIN FOR THE GROUP (A): 17.4959 2.6233 30.3081 REMARK 3 T TENSOR REMARK 3 T11: -0.0985 T22: -0.0398 REMARK 3 T33: 0.0123 T12: 0.0541 REMARK 3 T13: 0.0253 T23: 0.0571 REMARK 3 L TENSOR REMARK 3 L11: 8.8140 L22: 2.8766 REMARK 3 L33: 2.5658 L12: -0.6549 REMARK 3 L13: -1.1304 L23: 0.1767 REMARK 3 S TENSOR REMARK 3 S11: -0.0393 S12: 0.4608 S13: 0.3678 REMARK 3 S21: -0.2749 S22: -0.0547 S23: -0.3783 REMARK 3 S31: 0.0040 S32: 0.2507 S33: 0.0940 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 168 A 185 REMARK 3 ORIGIN FOR THE GROUP (A): 13.2601 10.1381 34.4255 REMARK 3 T TENSOR REMARK 3 T11: -0.1124 T22: -0.1262 REMARK 3 T33: -0.0300 T12: 0.0102 REMARK 3 T13: -0.0155 T23: 0.0851 REMARK 3 L TENSOR REMARK 3 L11: 7.4368 L22: 5.0537 REMARK 3 L33: 4.3095 L12: -4.3868 REMARK 3 L13: -2.2992 L23: 2.2666 REMARK 3 S TENSOR REMARK 3 S11: 0.0607 S12: -0.0870 S13: 1.0329 REMARK 3 S21: -0.0206 S22: 0.2244 S23: -0.3632 REMARK 3 S31: -0.1522 S32: 0.2938 S33: -0.2851 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2WEX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-APR-09. REMARK 100 THE DEPOSITION ID IS D_1290039343. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13097 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 8.410 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.49 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2WEW REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ABOUT 1-2 MICROL OF PROTEIN (10-16 REMARK 280 MG/ML IN 20 MM TRIS-HCL, PH 7.2) WERE MIXED WITH 1-2 MICROL OF REMARK 280 30 % PEG1500 (W/V, IN DEIONISED WATER) AND EQUILIBRATED AGAINST REMARK 280 700 MICROL OF RESERVOIR SOLUTION CONTAINING 30 % PEG1500. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.74000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 24.91000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 24.91000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 109.11000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 24.91000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 24.91000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.37000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 24.91000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 24.91000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 109.11000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 24.91000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 24.91000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.37000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.74000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 17 REMARK 465 LEU A 32 REMARK 465 GLY A 33 REMARK 465 VAL A 34 REMARK 465 ASP A 35 REMARK 465 GLU A 114 REMARK 465 GLY A 115 REMARK 465 ARG A 116 REMARK 465 PRO A 117 REMARK 465 ASP A 118 REMARK 465 SER A 186 REMARK 465 ASN A 187 REMARK 465 ASN A 188 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2061 O HOH A 2063 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 48 CD1 TYR A 48 CE1 -0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 128 CA - CB - SG ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG A 178 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 80 59.61 -94.41 REMARK 500 GLN A 139 101.90 -59.58 REMARK 500 ASP A 169 12.04 82.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GYM A 1186 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WEW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN APOM IN COMPLEX WITH MYRISTIC ACID REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 22-188 WITHOUT SIGNAL PEPTIDE HAVE BEEN CLONED DBREF 2WEX A 17 21 PDB 2WEX 2WEX 17 21 DBREF 2WEX A 22 188 UNP O95445 APOM_HUMAN 22 188 SEQRES 1 A 172 GLY SER HIS MET ASN GLN CYS PRO GLU HIS SER GLN LEU SEQRES 2 A 172 THR THR LEU GLY VAL ASP GLY LYS GLU PHE PRO GLU VAL SEQRES 3 A 172 HIS LEU GLY GLN TRP TYR PHE ILE ALA GLY ALA ALA PRO SEQRES 4 A 172 THR LYS GLU GLU LEU ALA THR PHE ASP PRO VAL ASP ASN SEQRES 5 A 172 ILE VAL PHE ASN MET ALA ALA GLY SER ALA PRO MET GLN SEQRES 6 A 172 LEU HIS LEU ARG ALA THR ILE ARG MET LYS ASP GLY LEU SEQRES 7 A 172 CYS VAL PRO ARG LYS TRP ILE TYR HIS LEU THR GLU GLY SEQRES 8 A 172 SER THR ASP LEU ARG THR GLU GLY ARG PRO ASP MET LYS SEQRES 9 A 172 THR GLU LEU PHE SER SER SER CYS PRO GLY GLY ILE MET SEQRES 10 A 172 LEU ASN GLU THR GLY GLN GLY TYR GLN ARG PHE LEU LEU SEQRES 11 A 172 TYR ASN ARG SER PRO HIS PRO PRO GLU LYS CYS VAL GLU SEQRES 12 A 172 GLU PHE LYS SER LEU THR SER CYS LEU ASP SER LYS ALA SEQRES 13 A 172 PHE LEU LEU THR PRO ARG ASN GLN GLU ALA CYS GLU LEU SEQRES 14 A 172 SER ASN ASN HET GYM A1186 21 HET EDO A1187 4 HETNAM GYM (2R)-2,3-DIHYDROXYPROPYL TETRADECANOATE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 GYM C17 H34 O4 FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *78(H2 O) HELIX 1 1 GLY A 36 GLU A 38 5 3 HELIX 2 2 PRO A 40 HIS A 43 5 4 HELIX 3 3 LYS A 57 ASP A 64 5 8 HELIX 4 4 GLU A 155 LEU A 168 1 14 SHEET 1 AA 7 CYS A 95 HIS A 103 0 SHEET 2 AA 7 GLN A 81 MET A 90 -1 O LEU A 82 N TYR A 102 SHEET 3 AA 7 VAL A 66 ALA A 75 -1 N ASP A 67 O ARG A 89 SHEET 4 AA 7 GLY A 45 ALA A 54 -1 O GLY A 45 N MET A 73 SHEET 5 AA 7 TYR A 141 ASN A 148 -1 O PHE A 144 N ALA A 53 SHEET 6 AA 7 GLY A 131 GLY A 138 -1 O ILE A 132 N TYR A 147 SHEET 7 AA 7 LYS A 120 PHE A 124 -1 O LYS A 120 N THR A 137 SHEET 1 AB 5 CYS A 95 HIS A 103 0 SHEET 2 AB 5 GLN A 81 MET A 90 -1 O LEU A 82 N TYR A 102 SHEET 3 AB 5 VAL A 66 ALA A 75 -1 N ASP A 67 O ARG A 89 SHEET 4 AB 5 GLY A 45 ALA A 54 -1 O GLY A 45 N MET A 73 SHEET 5 AB 5 ALA A 172 LEU A 175 -1 O ALA A 172 N ALA A 54 SSBOND 1 CYS A 23 CYS A 167 1555 1555 2.07 SSBOND 2 CYS A 95 CYS A 183 1555 1555 2.05 CISPEP 1 PHE A 39 PRO A 40 0 1.50 SITE 1 AC1 9 PRO A 40 HIS A 43 TRP A 47 PHE A 63 SITE 2 AC1 9 ILE A 69 PHE A 71 TYR A 102 GLU A 136 SITE 3 AC1 9 TYR A 147 CRYST1 49.820 49.820 145.480 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020072 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020072 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006874 0.00000