HEADER BIOSYNTHETIC PROTEIN 03-APR-09 2WFB TITLE HIGH RESOLUTION STRUCTURE OF THE APO FORM OF THE ORANGE PROTEIN (ORP) TITLE 2 FROM DESULFOVIBRIO GIGAS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN ORP; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: THE ORANGE PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO GIGAS; SOURCE 3 ORGANISM_TAXID: 879; SOURCE 4 ATCC: 19364; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET 21-D KEYWDS MIXED MOLYBDENUM-COPPER SULPHIDE CLUSTER, ALPHA AND BETA PROTEIN, KEYWDS 2 BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.NAJMUDIN,C.BONIFACIO,A.G.DUARTE,A.S.PEREIRA,I.MOURA,J.M.MOURA, AUTHOR 2 M.J.ROMAO REVDAT 2 13-DEC-23 2WFB 1 REMARK REVDAT 1 26-MAY-10 2WFB 0 JRNL AUTH S.NAJMUDIN,C.BONIFACIO,A.G.DUARTE,I.MOURA,J.G.MOURA, JRNL AUTH 2 M.J.ROMAO JRNL TITL HIGH RESOLUTION CRYSTAL STRUCTURE OF THE APO FORM OF THE JRNL TITL 2 ORANGE PROTEIN (APO-ORP) FROM DESULFOVIBRIO GIGAS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.NAJMUDIN,C.BONIFACIO,A.G.DUARTE,S.R.PAULETA,I.MOURA, REMARK 1 AUTH 2 J.J.G.MOURA,M.J.ROMAO REMARK 1 TITL CRYSTALLIZATION AND CRYSTALLOGRAPHIC ANALYSIS OF THE APO REMARK 1 TITL 2 FORM OF THE ORANGE PROTEIN (ORP) FROM DESULFOVIBRIO GIGAS. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 65 730 2009 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 19574652 REMARK 1 DOI 10.1107/S1744309109023392 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0036 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 106.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 3 NUMBER OF REFLECTIONS : 7108 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 347 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 328 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 58.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.1930 REMARK 3 BIN FREE R VALUE SET COUNT : 20 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 850 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 78 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.13000 REMARK 3 B22 (A**2) : 0.13000 REMARK 3 B33 (A**2) : -0.19000 REMARK 3 B12 (A**2) : 0.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.208 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.189 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.182 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 890 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1209 ; 1.650 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 123 ; 8.252 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 35 ;35.580 ;24.857 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 134 ;18.695 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;21.366 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 136 ; 0.140 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 677 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 596 ; 0.803 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 934 ; 1.551 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 294 ; 2.656 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 273 ; 4.561 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS.U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 2WFB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-APR-09. REMARK 100 THE DEPOSITION ID IS D_1290039376. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7446 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 106.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.09000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 16.90 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: PDB ENTRY 1O13 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA ACETATE, 0.2 M NAH2PO4 PH REMARK 280 4.5, 15-30% PEG 3K OR PEG 8K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.36167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 70.72333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 70.72333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.36167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2075 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2073 O HOH A 2076 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CH3 ACT A 1124 CH3 ACT A 1124 6555 2.03 REMARK 500 O HOH A 2026 O HOH A 2036 6655 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 37 N - CA - C ANGL. DEV. = 16.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 24 -69.89 -102.87 REMARK 500 THR A 37 -123.18 -35.56 REMARK 500 MET A 38 71.41 -112.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 36 THR A 37 34.16 REMARK 500 THR A 37 MET A 38 60.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1121 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1124 REMARK 999 REMARK 999 SEQUENCE REMARK 999 FIRST THREE RESIDUES (ASH) ARE A RECOMBINANT ARTIFACT, I.E. REMARK 999 ACTUAL LENGTH OF PROTEIN IS 117 AMINO ACID RESIDUES. DBREF 2WFB A 4 120 UNP Q5DUA6 Q5DUA6_DESGI 1 117 SEQADV 2WFB ALA A 1 UNP Q5DUA6 EXPRESSION TAG SEQADV 2WFB SER A 2 UNP Q5DUA6 EXPRESSION TAG SEQADV 2WFB HIS A 3 UNP Q5DUA6 EXPRESSION TAG SEQRES 1 A 120 ALA SER HIS MET GLN ARG ILE ALA VAL THR ALA GLU GLY SEQRES 2 A 120 PRO GLY LEU ASP GLY LEU VAL ASP PRO ARG PHE GLY ARG SEQRES 3 A 120 ALA ALA GLY PHE VAL VAL VAL ASP ALA ALA THR MET ALA SEQRES 4 A 120 ALA GLU TYR VAL ASP ASN GLY ALA SER GLN THR LEU SER SEQRES 5 A 120 HIS GLY ALA GLY ILE ASN ALA ALA GLN VAL LEU ALA LYS SEQRES 6 A 120 SER GLY ALA GLY VAL LEU LEU THR GLY TYR VAL GLY PRO SEQRES 7 A 120 LYS ALA PHE GLN ALA LEU GLN ALA ALA GLY ILE LYS VAL SEQRES 8 A 120 GLY GLN ASP LEU GLU GLY LEU THR VAL ARG GLN ALA VAL SEQRES 9 A 120 GLN ARG PHE LEU ASP GLY GLN VAL PRO MET ALA ALA GLY SEQRES 10 A 120 PRO ASN LYS HET PO4 A1121 5 HET PO4 A1122 5 HET PO4 A1123 5 HET ACT A1124 4 HETNAM PO4 PHOSPHATE ION HETNAM ACT ACETATE ION FORMUL 2 PO4 3(O4 P 3-) FORMUL 5 ACT C2 H3 O2 1- FORMUL 6 HOH *78(H2 O) HELIX 1 1 ASN A 45 THR A 50 1 6 HELIX 2 2 GLY A 54 GLY A 67 1 14 HELIX 3 3 GLY A 77 ALA A 87 1 11 HELIX 4 4 THR A 99 ASP A 109 1 11 SHEET 1 AA 5 ALA A 40 ASP A 44 0 SHEET 2 AA 5 GLY A 29 ASP A 34 -1 O PHE A 30 N VAL A 43 SHEET 3 AA 5 HIS A 3 ALA A 11 -1 O ILE A 7 N VAL A 33 SHEET 4 AA 5 ALA A 68 LEU A 72 1 N GLY A 69 O ARG A 6 SHEET 5 AA 5 LYS A 90 GLY A 92 1 O LYS A 90 N LEU A 71 SITE 1 AC1 9 GLY A 25 GLY A 56 GLY A 77 ALA A 80 SITE 2 AC1 9 LYS A 120 PO4 A1122 PO4 A1123 HOH A2070 SITE 3 AC1 9 HOH A2072 SITE 1 AC2 11 ARG A 26 HIS A 53 GLY A 54 ALA A 55 SITE 2 AC2 11 GLY A 56 LYS A 120 PO4 A1121 PO4 A1123 SITE 3 AC2 11 HOH A2073 HOH A2074 HOH A2075 SITE 1 AC3 8 GLY A 77 PRO A 78 LYS A 79 ALA A 80 SITE 2 AC3 8 PO4 A1121 PO4 A1122 HOH A2074 HOH A2077 SITE 1 AC4 4 ARG A 23 ARG A 26 GLN A 49 HOH A2078 CRYST1 43.078 43.078 106.085 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023214 0.013402 0.000000 0.00000 SCALE2 0.000000 0.026805 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009426 0.00000 TER 862 LYS A 120 HETATM 863 P PO4 A1121 -12.570 30.733 15.833 1.00 20.16 P HETATM 864 O1 PO4 A1121 -11.811 30.143 14.717 1.00 20.13 O HETATM 865 O2 PO4 A1121 -13.094 32.055 15.383 1.00 22.11 O HETATM 866 O3 PO4 A1121 -13.686 29.830 16.221 1.00 20.78 O HETATM 867 O4 PO4 A1121 -11.644 30.925 17.010 1.00 21.45 O HETATM 868 P PO4 A1122 -13.414 29.452 19.995 1.00 28.81 P HETATM 869 O1 PO4 A1122 -12.561 30.658 19.688 1.00 30.18 O HETATM 870 O2 PO4 A1122 -14.823 29.937 20.172 1.00 30.70 O HETATM 871 O3 PO4 A1122 -13.254 28.430 18.880 1.00 31.76 O HETATM 872 O4 PO4 A1122 -12.944 28.779 21.254 1.00 29.50 O HETATM 873 P PO4 A1123 -15.179 33.242 18.029 1.00 40.59 P HETATM 874 O1 PO4 A1123 -13.917 33.669 17.343 1.00 37.34 O HETATM 875 O2 PO4 A1123 -15.999 34.476 18.297 1.00 38.77 O HETATM 876 O3 PO4 A1123 -15.924 32.229 17.183 1.00 40.47 O HETATM 877 O4 PO4 A1123 -14.854 32.590 19.344 1.00 42.14 O HETATM 878 C ACT A1124 -10.242 21.372 18.634 1.00 26.28 C HETATM 879 O ACT A1124 -9.925 21.786 19.753 1.00 27.01 O HETATM 880 OXT ACT A1124 -9.468 20.669 17.936 1.00 27.02 O HETATM 881 CH3 ACT A1124 -11.544 21.796 18.144 1.00 26.02 C HETATM 882 O HOH A2001 9.308 34.642 11.336 1.00 46.41 O HETATM 883 O HOH A2002 -0.097 18.339 12.685 1.00 46.58 O HETATM 884 O HOH A2003 -4.274 18.471 10.988 1.00 49.89 O HETATM 885 O HOH A2004 1.757 18.455 7.238 1.00 52.88 O HETATM 886 O HOH A2005 1.250 23.051 6.016 1.00 25.49 O HETATM 887 O HOH A2006 7.022 24.661 7.605 1.00 29.19 O HETATM 888 O HOH A2007 6.420 32.229 18.462 1.00 48.22 O HETATM 889 O HOH A2008 8.525 23.205 2.642 1.00 47.34 O HETATM 890 O HOH A2009 8.566 21.124 12.670 1.00 34.78 O HETATM 891 O HOH A2010 5.713 19.923 2.123 1.00 39.12 O HETATM 892 O HOH A2011 3.302 17.526 0.245 1.00 48.06 O HETATM 893 O HOH A2012 -2.416 18.942 4.381 1.00 28.75 O HETATM 894 O HOH A2013 -1.137 22.089 6.278 1.00 17.20 O HETATM 895 O HOH A2014 -8.214 23.090 3.145 1.00 19.25 O HETATM 896 O HOH A2015 -7.685 22.019 12.896 1.00 29.88 O HETATM 897 O HOH A2016 -9.829 21.489 10.512 1.00 31.59 O HETATM 898 O HOH A2017 -13.686 25.764 15.371 1.00 22.61 O HETATM 899 O HOH A2018 -0.995 21.072 16.956 1.00 31.20 O HETATM 900 O HOH A2019 9.817 33.302 9.397 1.00 34.31 O HETATM 901 O HOH A2020 13.931 30.690 10.098 1.00 48.68 O HETATM 902 O HOH A2021 11.696 29.284 13.832 1.00 30.15 O HETATM 903 O HOH A2022 8.128 34.296 14.746 1.00 51.20 O HETATM 904 O HOH A2023 8.860 32.864 16.805 1.00 59.40 O HETATM 905 O HOH A2024 2.440 28.514 -5.594 1.00 26.99 O HETATM 906 O HOH A2025 -11.017 29.030 -7.768 1.00 54.79 O HETATM 907 O HOH A2026 9.887 25.900 12.460 1.00 36.31 O HETATM 908 O HOH A2027 0.983 20.236 15.040 1.00 35.28 O HETATM 909 O HOH A2028 7.864 23.867 14.771 1.00 30.51 O HETATM 910 O HOH A2029 1.215 24.823 21.455 1.00 35.58 O HETATM 911 O HOH A2030 3.822 27.334 19.560 1.00 21.07 O HETATM 912 O HOH A2031 -4.862 19.273 15.181 1.00 38.45 O HETATM 913 O HOH A2032 -16.248 25.767 22.394 1.00 21.74 O HETATM 914 O HOH A2033 -13.342 24.758 30.426 1.00 43.83 O HETATM 915 O HOH A2034 -9.871 30.274 27.353 1.00 42.80 O HETATM 916 O HOH A2035 -8.452 32.601 25.539 1.00 28.86 O HETATM 917 O HOH A2036 -6.786 39.770 22.711 1.00 40.01 O HETATM 918 O HOH A2037 1.282 40.747 15.366 1.00 33.44 O HETATM 919 O HOH A2038 -0.016 44.617 8.907 1.00 38.30 O HETATM 920 O HOH A2039 -15.667 25.193 2.896 1.00 35.51 O HETATM 921 O HOH A2040 -15.598 40.832 14.880 1.00 31.29 O HETATM 922 O HOH A2041 -11.854 39.676 20.930 1.00 23.67 O HETATM 923 O HOH A2042 -14.871 34.100 24.694 1.00 52.27 O HETATM 924 O HOH A2043 -19.673 36.420 25.586 1.00 44.11 O HETATM 925 O HOH A2044 -4.870 41.000 20.507 1.00 35.01 O HETATM 926 O HOH A2045 -10.170 35.463 -0.041 1.00 36.04 O HETATM 927 O HOH A2046 -15.002 30.072 2.536 1.00 48.89 O HETATM 928 O HOH A2047 -12.876 36.818 0.641 1.00 47.64 O HETATM 929 O HOH A2048 -14.910 35.731 3.560 1.00 40.19 O HETATM 930 O HOH A2049 -8.951 22.443 -3.338 1.00 35.24 O HETATM 931 O HOH A2050 1.881 24.115 -3.487 1.00 20.50 O HETATM 932 O HOH A2051 4.232 31.235 -2.317 1.00 30.35 O HETATM 933 O HOH A2052 -1.565 30.509 -6.216 1.00 20.26 O HETATM 934 O HOH A2053 6.900 33.215 -6.678 1.00 31.49 O HETATM 935 O HOH A2054 4.544 30.331 -5.163 1.00 24.86 O HETATM 936 O HOH A2055 -8.612 28.410 -6.933 1.00 33.94 O HETATM 937 O HOH A2056 -9.579 33.959 -2.538 1.00 34.61 O HETATM 938 O HOH A2057 -4.258 39.901 -2.104 1.00 14.75 O HETATM 939 O HOH A2058 3.416 37.637 -9.312 1.00 29.50 O HETATM 940 O HOH A2059 -8.800 41.035 -4.467 1.00 37.73 O HETATM 941 O HOH A2060 -9.931 37.230 -6.608 1.00 52.20 O HETATM 942 O HOH A2061 -10.719 37.512 2.380 1.00 22.17 O HETATM 943 O HOH A2062 -9.064 44.274 -0.310 1.00 35.21 O HETATM 944 O HOH A2063 -8.721 42.519 7.665 1.00 26.76 O HETATM 945 O HOH A2064 -15.416 40.533 4.404 1.00 41.83 O HETATM 946 O HOH A2065 -13.193 46.118 9.471 1.00 47.42 O HETATM 947 O HOH A2066 -16.562 38.847 5.545 1.00 49.40 O HETATM 948 O HOH A2067 -18.816 39.977 8.734 1.00 35.45 O HETATM 949 O HOH A2068 -20.414 30.754 6.026 1.00 49.23 O HETATM 950 O HOH A2069 -20.839 36.114 12.902 1.00 44.85 O HETATM 951 O HOH A2070 -11.444 27.229 15.068 1.00 23.98 O HETATM 952 O HOH A2071 -16.393 29.114 17.594 0.50 28.16 O HETATM 953 O HOH A2072 -12.369 29.070 12.497 1.00 14.68 O HETATM 954 O HOH A2073 -14.587 31.182 22.332 1.00 33.18 O HETATM 955 O HOH A2074 -12.413 33.189 20.355 1.00 39.08 O HETATM 956 O HOH A2075 -15.318 26.532 17.693 0.50 22.48 O HETATM 957 O HOH A2076 -14.864 33.052 22.519 1.00 32.27 O HETATM 958 O HOH A2077 -18.645 34.164 19.027 1.00 34.91 O HETATM 959 O HOH A2078 -8.084 18.669 16.056 1.00 44.67 O CONECT 863 864 865 866 867 CONECT 864 863 CONECT 865 863 CONECT 866 863 CONECT 867 863 CONECT 868 869 870 871 872 CONECT 869 868 CONECT 870 868 CONECT 871 868 CONECT 872 868 CONECT 873 874 875 876 877 CONECT 874 873 CONECT 875 873 CONECT 876 873 CONECT 877 873 CONECT 878 879 880 881 CONECT 879 878 CONECT 880 878 CONECT 881 878 MASTER 365 0 4 4 5 0 9 6 947 1 19 10 END