HEADER OXIDOREDUCTASE 03-APR-09 2WFC TITLE CRYSTAL STRUCTURE OF PEROXIREDOXIN 5 FROM ARENICOLA MARINA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXIREDOXIN 5; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RESIDUES 28-186; COMPND 5 SYNONYM: PRDX5; COMPND 6 EC: 1.11.1.15; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARENICOLA MARINA; SOURCE 3 ORGANISM_COMMON: LUGWORM; SOURCE 4 ORGANISM_TAXID: 6344; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: M15; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE-60 KEYWDS OXIDOREDUCTASE, ANTIOXIDANT ENZYMES EXPDTA X-RAY DIFFRACTION AUTHOR A.SMEETS,J.P.DECLERCQ REVDAT 2 13-DEC-23 2WFC 1 REMARK REVDAT 1 19-MAY-10 2WFC 0 JRNL AUTH A.SMEETS,B.KNOOPS,J.P.DECLERCQ JRNL TITL CRYSTAL STRUCTURE OF PEROXIREDOXIN 5 FROM ARENICOLA MARINA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0070 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 48544 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2596 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3070 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 172 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4620 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 627 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : 1.10000 REMARK 3 B33 (A**2) : -1.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.43000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.128 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.654 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4707 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3108 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6375 ; 1.676 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7696 ; 0.960 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 632 ; 6.403 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;38.739 ;26.098 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 776 ;14.203 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;10.358 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 740 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5276 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 828 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3143 ; 0.883 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1316 ; 0.301 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5014 ; 1.438 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1564 ; 2.529 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1361 ; 3.773 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 187 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8100 54.7400 20.0630 REMARK 3 T TENSOR REMARK 3 T11: 0.0095 T22: 0.0017 REMARK 3 T33: 0.0468 T12: -0.0017 REMARK 3 T13: 0.0013 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 1.6440 L22: 2.2946 REMARK 3 L33: 3.0958 L12: 0.4620 REMARK 3 L13: -0.3815 L23: -0.1320 REMARK 3 S TENSOR REMARK 3 S11: 0.0184 S12: -0.0366 S13: -0.0871 REMARK 3 S21: 0.1452 S22: -0.0285 S23: 0.0388 REMARK 3 S31: -0.0005 S32: -0.0294 S33: 0.0100 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 29 B 187 REMARK 3 ORIGIN FOR THE GROUP (A): -5.7750 82.0260 38.3840 REMARK 3 T TENSOR REMARK 3 T11: 0.0292 T22: 0.0231 REMARK 3 T33: 0.0200 T12: -0.0069 REMARK 3 T13: -0.0048 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 1.8697 L22: 1.9397 REMARK 3 L33: 3.2219 L12: -0.3886 REMARK 3 L13: -0.4430 L23: 0.0830 REMARK 3 S TENSOR REMARK 3 S11: 0.0060 S12: -0.2007 S13: 0.0507 REMARK 3 S21: 0.2135 S22: -0.0031 S23: 0.0173 REMARK 3 S31: -0.0056 S32: 0.0383 S33: -0.0029 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 29 C 187 REMARK 3 RESIDUE RANGE : C 1188 C 1188 REMARK 3 ORIGIN FOR THE GROUP (A): -1.8510 81.9330 7.2170 REMARK 3 T TENSOR REMARK 3 T11: 0.0058 T22: 0.0308 REMARK 3 T33: 0.0196 T12: -0.0015 REMARK 3 T13: 0.0009 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 1.6801 L22: 1.8772 REMARK 3 L33: 3.8685 L12: 0.4184 REMARK 3 L13: -0.2791 L23: 0.0165 REMARK 3 S TENSOR REMARK 3 S11: -0.0211 S12: 0.1925 S13: 0.0488 REMARK 3 S21: -0.0902 S22: -0.0044 S23: -0.0499 REMARK 3 S31: -0.0499 S32: -0.0778 S33: 0.0254 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 29 D 187 REMARK 3 ORIGIN FOR THE GROUP (A): 19.3300 54.6890 -11.0430 REMARK 3 T TENSOR REMARK 3 T11: 0.0821 T22: 0.2135 REMARK 3 T33: 0.0682 T12: -0.0484 REMARK 3 T13: -0.0144 T23: -0.0710 REMARK 3 L TENSOR REMARK 3 L11: 3.0303 L22: 1.8558 REMARK 3 L33: 5.1356 L12: 0.7164 REMARK 3 L13: -1.9816 L23: -0.4212 REMARK 3 S TENSOR REMARK 3 S11: -0.2123 S12: 0.7022 S13: -0.1856 REMARK 3 S21: -0.3499 S22: 0.0895 S23: 0.0342 REMARK 3 S31: 0.2280 S32: -0.7060 S33: 0.1228 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2WFC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-APR-09. REMARK 100 THE DEPOSITION ID IS D_1290039378. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797 REMARK 200 MONOCHROMATOR : FIRST CRYSTAL FLAT AND N2 COOLED REMARK 200 OPTICS : SECOND CRYSTAL SAGITALLY BENT REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51140 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 34.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.27000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1HD2 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000 29%(W/V), DTT 0.001 M REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 56.03500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 74 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN B, CYS 74 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN C, CYS 74 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN D, CYS 74 TO SER REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 28 REMARK 465 GLY A 188 REMARK 465 HIS A 189 REMARK 465 HIS A 190 REMARK 465 HIS A 191 REMARK 465 HIS A 192 REMARK 465 HIS A 193 REMARK 465 HIS A 194 REMARK 465 MET B 28 REMARK 465 GLY B 188 REMARK 465 HIS B 189 REMARK 465 HIS B 190 REMARK 465 HIS B 191 REMARK 465 HIS B 192 REMARK 465 HIS B 193 REMARK 465 HIS B 194 REMARK 465 MET C 28 REMARK 465 GLY C 188 REMARK 465 HIS C 189 REMARK 465 HIS C 190 REMARK 465 HIS C 191 REMARK 465 HIS C 192 REMARK 465 HIS C 193 REMARK 465 HIS C 194 REMARK 465 MET D 28 REMARK 465 GLY D 188 REMARK 465 HIS D 189 REMARK 465 HIS D 190 REMARK 465 HIS D 191 REMARK 465 HIS D 192 REMARK 465 HIS D 193 REMARK 465 HIS D 194 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 149 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 77 -53.83 -121.36 REMARK 500 LYS A 172 -17.02 -140.47 REMARK 500 THR A 175 -100.20 -139.55 REMARK 500 THR B 77 -57.09 -121.91 REMARK 500 ASP B 118 117.34 -34.63 REMARK 500 ASP B 119 -6.19 73.07 REMARK 500 THR B 175 -101.41 -139.33 REMARK 500 THR C 77 -60.01 -120.16 REMARK 500 ASP C 118 120.11 -36.74 REMARK 500 ASP C 126 76.87 -119.04 REMARK 500 LEU C 141 74.40 -117.22 REMARK 500 ARG C 149 -164.28 -125.35 REMARK 500 THR C 175 -99.19 -139.28 REMARK 500 ASP D 118 107.71 -18.14 REMARK 500 ASP D 119 -12.29 67.73 REMARK 500 ASP D 126 68.79 -117.74 REMARK 500 ARG D 149 -164.80 -123.75 REMARK 500 THR D 175 -97.72 -136.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2050 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH B2036 DISTANCE = 7.16 ANGSTROMS REMARK 525 HOH B2037 DISTANCE = 5.81 ANGSTROMS REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 1188 DBREF 2WFC A 28 186 UNP Q1AN23 Q1AN23_AREMA 28 186 DBREF 2WFC B 28 186 UNP Q1AN23 Q1AN23_AREMA 28 186 DBREF 2WFC C 28 186 UNP Q1AN23 Q1AN23_AREMA 28 186 DBREF 2WFC D 28 186 UNP Q1AN23 Q1AN23_AREMA 28 186 SEQADV 2WFC GLY A 187 UNP Q1AN23 EXPRESSION TAG SEQADV 2WFC GLY A 188 UNP Q1AN23 EXPRESSION TAG SEQADV 2WFC HIS A 189 UNP Q1AN23 EXPRESSION TAG SEQADV 2WFC HIS A 190 UNP Q1AN23 EXPRESSION TAG SEQADV 2WFC HIS A 191 UNP Q1AN23 EXPRESSION TAG SEQADV 2WFC HIS A 192 UNP Q1AN23 EXPRESSION TAG SEQADV 2WFC HIS A 193 UNP Q1AN23 EXPRESSION TAG SEQADV 2WFC HIS A 194 UNP Q1AN23 EXPRESSION TAG SEQADV 2WFC SER A 74 UNP Q1AN23 CYS 74 ENGINEERED MUTATION SEQADV 2WFC GLY B 187 UNP Q1AN23 EXPRESSION TAG SEQADV 2WFC GLY B 188 UNP Q1AN23 EXPRESSION TAG SEQADV 2WFC HIS B 189 UNP Q1AN23 EXPRESSION TAG SEQADV 2WFC HIS B 190 UNP Q1AN23 EXPRESSION TAG SEQADV 2WFC HIS B 191 UNP Q1AN23 EXPRESSION TAG SEQADV 2WFC HIS B 192 UNP Q1AN23 EXPRESSION TAG SEQADV 2WFC HIS B 193 UNP Q1AN23 EXPRESSION TAG SEQADV 2WFC HIS B 194 UNP Q1AN23 EXPRESSION TAG SEQADV 2WFC SER B 74 UNP Q1AN23 CYS 74 ENGINEERED MUTATION SEQADV 2WFC GLY C 187 UNP Q1AN23 EXPRESSION TAG SEQADV 2WFC GLY C 188 UNP Q1AN23 EXPRESSION TAG SEQADV 2WFC HIS C 189 UNP Q1AN23 EXPRESSION TAG SEQADV 2WFC HIS C 190 UNP Q1AN23 EXPRESSION TAG SEQADV 2WFC HIS C 191 UNP Q1AN23 EXPRESSION TAG SEQADV 2WFC HIS C 192 UNP Q1AN23 EXPRESSION TAG SEQADV 2WFC HIS C 193 UNP Q1AN23 EXPRESSION TAG SEQADV 2WFC HIS C 194 UNP Q1AN23 EXPRESSION TAG SEQADV 2WFC SER C 74 UNP Q1AN23 CYS 74 ENGINEERED MUTATION SEQADV 2WFC GLY D 187 UNP Q1AN23 EXPRESSION TAG SEQADV 2WFC GLY D 188 UNP Q1AN23 EXPRESSION TAG SEQADV 2WFC HIS D 189 UNP Q1AN23 EXPRESSION TAG SEQADV 2WFC HIS D 190 UNP Q1AN23 EXPRESSION TAG SEQADV 2WFC HIS D 191 UNP Q1AN23 EXPRESSION TAG SEQADV 2WFC HIS D 192 UNP Q1AN23 EXPRESSION TAG SEQADV 2WFC HIS D 193 UNP Q1AN23 EXPRESSION TAG SEQADV 2WFC HIS D 194 UNP Q1AN23 EXPRESSION TAG SEQADV 2WFC SER D 74 UNP Q1AN23 CYS 74 ENGINEERED MUTATION SEQRES 1 A 167 MET PRO ILE LYS GLU GLY ASP LYS LEU PRO ALA VAL THR SEQRES 2 A 167 VAL PHE GLY ALA THR PRO ASN ASP LYS VAL ASN MET ALA SEQRES 3 A 167 GLU LEU PHE ALA GLY LYS LYS GLY VAL LEU PHE ALA VAL SEQRES 4 A 167 PRO GLY ALA PHE THR PRO GLY SER SER LYS THR HIS LEU SEQRES 5 A 167 PRO GLY TYR VAL GLU GLN ALA ALA ALA ILE HIS GLY LYS SEQRES 6 A 167 GLY VAL ASP ILE ILE ALA CYS MET ALA VAL ASN ASP SER SEQRES 7 A 167 PHE VAL MET ASP ALA TRP GLY LYS ALA HIS GLY ALA ASP SEQRES 8 A 167 ASP LYS VAL GLN MET LEU ALA ASP PRO GLY GLY ALA PHE SEQRES 9 A 167 THR LYS ALA VAL ASP MET GLU LEU ASP LEU SER ALA VAL SEQRES 10 A 167 LEU GLY ASN VAL ARG SER LYS ARG TYR SER LEU VAL ILE SEQRES 11 A 167 GLU ASP GLY VAL VAL THR LYS VAL ASN VAL GLU PRO ASP SEQRES 12 A 167 GLY LYS GLY LEU THR CYS SER LEU ALA PRO ASN ILE LEU SEQRES 13 A 167 SER GLN LEU GLY GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 167 MET PRO ILE LYS GLU GLY ASP LYS LEU PRO ALA VAL THR SEQRES 2 B 167 VAL PHE GLY ALA THR PRO ASN ASP LYS VAL ASN MET ALA SEQRES 3 B 167 GLU LEU PHE ALA GLY LYS LYS GLY VAL LEU PHE ALA VAL SEQRES 4 B 167 PRO GLY ALA PHE THR PRO GLY SER SER LYS THR HIS LEU SEQRES 5 B 167 PRO GLY TYR VAL GLU GLN ALA ALA ALA ILE HIS GLY LYS SEQRES 6 B 167 GLY VAL ASP ILE ILE ALA CYS MET ALA VAL ASN ASP SER SEQRES 7 B 167 PHE VAL MET ASP ALA TRP GLY LYS ALA HIS GLY ALA ASP SEQRES 8 B 167 ASP LYS VAL GLN MET LEU ALA ASP PRO GLY GLY ALA PHE SEQRES 9 B 167 THR LYS ALA VAL ASP MET GLU LEU ASP LEU SER ALA VAL SEQRES 10 B 167 LEU GLY ASN VAL ARG SER LYS ARG TYR SER LEU VAL ILE SEQRES 11 B 167 GLU ASP GLY VAL VAL THR LYS VAL ASN VAL GLU PRO ASP SEQRES 12 B 167 GLY LYS GLY LEU THR CYS SER LEU ALA PRO ASN ILE LEU SEQRES 13 B 167 SER GLN LEU GLY GLY HIS HIS HIS HIS HIS HIS SEQRES 1 C 167 MET PRO ILE LYS GLU GLY ASP LYS LEU PRO ALA VAL THR SEQRES 2 C 167 VAL PHE GLY ALA THR PRO ASN ASP LYS VAL ASN MET ALA SEQRES 3 C 167 GLU LEU PHE ALA GLY LYS LYS GLY VAL LEU PHE ALA VAL SEQRES 4 C 167 PRO GLY ALA PHE THR PRO GLY SER SER LYS THR HIS LEU SEQRES 5 C 167 PRO GLY TYR VAL GLU GLN ALA ALA ALA ILE HIS GLY LYS SEQRES 6 C 167 GLY VAL ASP ILE ILE ALA CYS MET ALA VAL ASN ASP SER SEQRES 7 C 167 PHE VAL MET ASP ALA TRP GLY LYS ALA HIS GLY ALA ASP SEQRES 8 C 167 ASP LYS VAL GLN MET LEU ALA ASP PRO GLY GLY ALA PHE SEQRES 9 C 167 THR LYS ALA VAL ASP MET GLU LEU ASP LEU SER ALA VAL SEQRES 10 C 167 LEU GLY ASN VAL ARG SER LYS ARG TYR SER LEU VAL ILE SEQRES 11 C 167 GLU ASP GLY VAL VAL THR LYS VAL ASN VAL GLU PRO ASP SEQRES 12 C 167 GLY LYS GLY LEU THR CYS SER LEU ALA PRO ASN ILE LEU SEQRES 13 C 167 SER GLN LEU GLY GLY HIS HIS HIS HIS HIS HIS SEQRES 1 D 167 MET PRO ILE LYS GLU GLY ASP LYS LEU PRO ALA VAL THR SEQRES 2 D 167 VAL PHE GLY ALA THR PRO ASN ASP LYS VAL ASN MET ALA SEQRES 3 D 167 GLU LEU PHE ALA GLY LYS LYS GLY VAL LEU PHE ALA VAL SEQRES 4 D 167 PRO GLY ALA PHE THR PRO GLY SER SER LYS THR HIS LEU SEQRES 5 D 167 PRO GLY TYR VAL GLU GLN ALA ALA ALA ILE HIS GLY LYS SEQRES 6 D 167 GLY VAL ASP ILE ILE ALA CYS MET ALA VAL ASN ASP SER SEQRES 7 D 167 PHE VAL MET ASP ALA TRP GLY LYS ALA HIS GLY ALA ASP SEQRES 8 D 167 ASP LYS VAL GLN MET LEU ALA ASP PRO GLY GLY ALA PHE SEQRES 9 D 167 THR LYS ALA VAL ASP MET GLU LEU ASP LEU SER ALA VAL SEQRES 10 D 167 LEU GLY ASN VAL ARG SER LYS ARG TYR SER LEU VAL ILE SEQRES 11 D 167 GLU ASP GLY VAL VAL THR LYS VAL ASN VAL GLU PRO ASP SEQRES 12 D 167 GLY LYS GLY LEU THR CYS SER LEU ALA PRO ASN ILE LEU SEQRES 13 D 167 SER GLN LEU GLY GLY HIS HIS HIS HIS HIS HIS HET ACT C1188 4 HETNAM ACT ACETATE ION FORMUL 5 ACT C2 H3 O2 1- FORMUL 6 HOH *627(H2 O) HELIX 1 1 MET A 52 PHE A 56 1 5 HELIX 2 2 THR A 71 LYS A 92 1 22 HELIX 3 3 ASP A 104 HIS A 115 1 12 HELIX 4 4 GLY A 129 VAL A 135 1 7 HELIX 5 5 LEU A 141 GLY A 146 1 6 HELIX 6 6 LEU A 178 GLY A 187 1 10 HELIX 7 1 MET B 52 PHE B 56 1 5 HELIX 8 2 THR B 71 GLY B 91 1 21 HELIX 9 3 ASP B 104 HIS B 115 1 12 HELIX 10 4 GLY B 129 VAL B 135 1 7 HELIX 11 5 SER B 142 GLY B 146 1 5 HELIX 12 6 LEU B 178 GLY B 187 1 10 HELIX 13 1 MET C 52 PHE C 56 1 5 HELIX 14 2 THR C 71 GLY C 91 1 21 HELIX 15 3 ASP C 104 HIS C 115 1 12 HELIX 16 4 GLY C 129 VAL C 135 1 7 HELIX 17 5 LEU C 141 GLY C 146 1 6 HELIX 18 6 LEU C 178 GLY C 187 1 10 HELIX 19 1 MET D 52 PHE D 56 1 5 HELIX 20 2 THR D 71 LYS D 92 1 22 HELIX 21 3 ASP D 104 HIS D 115 1 12 HELIX 22 4 GLY D 129 VAL D 135 1 7 HELIX 23 5 LEU D 141 GLY D 146 1 6 HELIX 24 6 LEU D 178 GLY D 187 1 10 SHEET 1 AA 2 THR A 40 PHE A 42 0 SHEET 2 AA 2 LYS A 49 ASN A 51 -1 O VAL A 50 N VAL A 41 SHEET 1 AB 5 GLN A 122 ALA A 125 0 SHEET 2 AB 5 ILE A 96 ALA A 101 1 O ILE A 97 N GLN A 122 SHEET 3 AB 5 LYS A 60 ALA A 65 1 O VAL A 62 N ALA A 98 SHEET 4 AB 5 TYR A 153 GLU A 158 -1 O TYR A 153 N ALA A 65 SHEET 5 AB 5 VAL A 161 VAL A 167 -1 O VAL A 161 N GLU A 158 SHEET 1 AC 2 GLU A 138 LEU A 139 0 SHEET 2 AC 2 ARG A 149 SER A 150 -1 O ARG A 149 N LEU A 139 SHEET 1 BA 2 THR B 40 PHE B 42 0 SHEET 2 BA 2 LYS B 49 ASN B 51 -1 O VAL B 50 N VAL B 41 SHEET 1 BB 5 GLN B 122 ALA B 125 0 SHEET 2 BB 5 ILE B 96 ALA B 101 1 O ILE B 97 N GLN B 122 SHEET 3 BB 5 LYS B 60 ALA B 65 1 O VAL B 62 N ALA B 98 SHEET 4 BB 5 TYR B 153 GLU B 158 -1 O TYR B 153 N ALA B 65 SHEET 5 BB 5 VAL B 161 VAL B 167 -1 O VAL B 161 N GLU B 158 SHEET 1 CA 2 THR C 40 PHE C 42 0 SHEET 2 CA 2 LYS C 49 ASN C 51 -1 O VAL C 50 N VAL C 41 SHEET 1 CB 5 GLN C 122 ALA C 125 0 SHEET 2 CB 5 ILE C 96 ALA C 101 1 O ILE C 97 N GLN C 122 SHEET 3 CB 5 LYS C 60 ALA C 65 1 O VAL C 62 N ALA C 98 SHEET 4 CB 5 TYR C 153 GLU C 158 -1 O TYR C 153 N ALA C 65 SHEET 5 CB 5 VAL C 161 VAL C 167 -1 O VAL C 161 N GLU C 158 SHEET 1 CC 2 GLU C 138 LEU C 139 0 SHEET 2 CC 2 ARG C 149 SER C 150 -1 O ARG C 149 N LEU C 139 SHEET 1 DA 2 THR D 40 PHE D 42 0 SHEET 2 DA 2 LYS D 49 ASN D 51 -1 O VAL D 50 N VAL D 41 SHEET 1 DB 5 GLN D 122 ALA D 125 0 SHEET 2 DB 5 ILE D 96 ALA D 101 1 O ILE D 97 N GLN D 122 SHEET 3 DB 5 LYS D 60 ALA D 65 1 O VAL D 62 N ALA D 98 SHEET 4 DB 5 TYR D 153 GLU D 158 -1 O TYR D 153 N ALA D 65 SHEET 5 DB 5 VAL D 161 VAL D 167 -1 O VAL D 161 N GLU D 158 SHEET 1 DC 2 GLU D 138 ASP D 140 0 SHEET 2 DC 2 VAL D 148 SER D 150 -1 O ARG D 149 N LEU D 139 SITE 1 AC1 6 LYS C 49 THR C 71 PRO C 72 GLY C 73 SITE 2 AC1 6 SER C 74 ARG C 152 CRYST1 35.210 112.070 68.910 90.00 97.35 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028401 0.000000 0.003663 0.00000 SCALE2 0.000000 0.008923 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014632 0.00000 MTRIX1 1 -0.700060 0.678050 -0.223970 -27.85693 1 MTRIX2 1 -0.678900 -0.729220 -0.085630 133.74178 1 MTRIX3 1 -0.221380 0.092100 0.970830 17.19934 1 MTRIX1 2 0.397620 -0.898750 0.184770 37.60585 1 MTRIX2 2 -0.902570 -0.419350 -0.097510 120.47395 1 MTRIX3 2 0.165120 -0.128000 -0.977930 31.58232 1 MTRIX1 3 0.232920 0.957990 0.167360 -40.09594 1 MTRIX2 3 0.958580 -0.255170 0.126530 51.82991 1 MTRIX3 3 0.163920 0.130960 -0.977740 -0.88668 1