data_2WFD # _entry.id 2WFD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2WFD PDBE EBI-39386 WWPDB D_1290039386 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2WFD _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2009-04-03 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Seiradake, E.' 1 'Mao, W.' 2 'Hernandez, V.' 3 'Baker, S.J.' 4 'Plattner, J.J.' 5 'Alley, M.R.K.' 6 'Cusack, S.' 7 # _citation.id primary _citation.title ;Crystal Structures of the Human and Fungal Cytosolic Leucyl-tRNA Synthetase Editing Domains: A Structural Basis for the Rational Design of Antifungal Benzoxaboroles. ; _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 390 _citation.page_first 196 _citation.page_last ? _citation.year 2009 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19426743 _citation.pdbx_database_id_DOI 10.1016/J.JMB.2009.04.073 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Seiradake, E.' 1 primary 'Mao, W.' 2 primary 'Hernandez, V.' 3 primary 'Baker, S.J.' 4 primary 'Plattner, J.J.' 5 primary 'Alley, M.R.K.' 6 primary 'Cusack, S.' 7 # _cell.entry_id 2WFD _cell.length_a 94.540 _cell.length_b 94.540 _cell.length_c 148.820 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WFD _symmetry.space_group_name_H-M 'P 65' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'LEUCYL-TRNA SYNTHETASE, CYTOPLASMIC' _entity.formula_weight 28471.697 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec 6.1.1.4 _entity.pdbx_mutation ? _entity.pdbx_fragment 'EDITING OR CP1 DOMAIN, RESIDUES 260-509' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'LEUCINE--TRNA LIGASE, LEURS' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;A(MSE)GPQEYTLLKLKVLEPYPSKLSGLKGKNIFLVAATLRPET(MSE)FGQTNCWVRPD(MSE)KYIGFETVNGDIFI CTQKAARN(MSE)SYQGFTKDNGVVPVVKEL(MSE)GEEILGASLSAPLTSYKVIYVLP(MSE)LTIKEDKGTGVVTSVP SDSPDDIAALRDLKKKQALRAKYGIRDD(MSE)VLPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYL KGFYEGI(MSE)LVDGFKGQKVQDVKKTIQKK(MSE)IDAGDALIY(MSE)E ; _entity_poly.pdbx_seq_one_letter_code_can ;AMGPQEYTLLKLKVLEPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVNGDIFICTQKAARNMSYQ GFTKDNGVVPVVKELMGEEILGASLSAPLTSYKVIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYG IRDDMVLPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIMLVDGFKGQKVQDVKKTIQKK MIDAGDALIYME ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 MSE n 1 3 GLY n 1 4 PRO n 1 5 GLN n 1 6 GLU n 1 7 TYR n 1 8 THR n 1 9 LEU n 1 10 LEU n 1 11 LYS n 1 12 LEU n 1 13 LYS n 1 14 VAL n 1 15 LEU n 1 16 GLU n 1 17 PRO n 1 18 TYR n 1 19 PRO n 1 20 SER n 1 21 LYS n 1 22 LEU n 1 23 SER n 1 24 GLY n 1 25 LEU n 1 26 LYS n 1 27 GLY n 1 28 LYS n 1 29 ASN n 1 30 ILE n 1 31 PHE n 1 32 LEU n 1 33 VAL n 1 34 ALA n 1 35 ALA n 1 36 THR n 1 37 LEU n 1 38 ARG n 1 39 PRO n 1 40 GLU n 1 41 THR n 1 42 MSE n 1 43 PHE n 1 44 GLY n 1 45 GLN n 1 46 THR n 1 47 ASN n 1 48 CYS n 1 49 TRP n 1 50 VAL n 1 51 ARG n 1 52 PRO n 1 53 ASP n 1 54 MSE n 1 55 LYS n 1 56 TYR n 1 57 ILE n 1 58 GLY n 1 59 PHE n 1 60 GLU n 1 61 THR n 1 62 VAL n 1 63 ASN n 1 64 GLY n 1 65 ASP n 1 66 ILE n 1 67 PHE n 1 68 ILE n 1 69 CYS n 1 70 THR n 1 71 GLN n 1 72 LYS n 1 73 ALA n 1 74 ALA n 1 75 ARG n 1 76 ASN n 1 77 MSE n 1 78 SER n 1 79 TYR n 1 80 GLN n 1 81 GLY n 1 82 PHE n 1 83 THR n 1 84 LYS n 1 85 ASP n 1 86 ASN n 1 87 GLY n 1 88 VAL n 1 89 VAL n 1 90 PRO n 1 91 VAL n 1 92 VAL n 1 93 LYS n 1 94 GLU n 1 95 LEU n 1 96 MSE n 1 97 GLY n 1 98 GLU n 1 99 GLU n 1 100 ILE n 1 101 LEU n 1 102 GLY n 1 103 ALA n 1 104 SER n 1 105 LEU n 1 106 SER n 1 107 ALA n 1 108 PRO n 1 109 LEU n 1 110 THR n 1 111 SER n 1 112 TYR n 1 113 LYS n 1 114 VAL n 1 115 ILE n 1 116 TYR n 1 117 VAL n 1 118 LEU n 1 119 PRO n 1 120 MSE n 1 121 LEU n 1 122 THR n 1 123 ILE n 1 124 LYS n 1 125 GLU n 1 126 ASP n 1 127 LYS n 1 128 GLY n 1 129 THR n 1 130 GLY n 1 131 VAL n 1 132 VAL n 1 133 THR n 1 134 SER n 1 135 VAL n 1 136 PRO n 1 137 SER n 1 138 ASP n 1 139 SER n 1 140 PRO n 1 141 ASP n 1 142 ASP n 1 143 ILE n 1 144 ALA n 1 145 ALA n 1 146 LEU n 1 147 ARG n 1 148 ASP n 1 149 LEU n 1 150 LYS n 1 151 LYS n 1 152 LYS n 1 153 GLN n 1 154 ALA n 1 155 LEU n 1 156 ARG n 1 157 ALA n 1 158 LYS n 1 159 TYR n 1 160 GLY n 1 161 ILE n 1 162 ARG n 1 163 ASP n 1 164 ASP n 1 165 MSE n 1 166 VAL n 1 167 LEU n 1 168 PRO n 1 169 PHE n 1 170 GLU n 1 171 PRO n 1 172 VAL n 1 173 PRO n 1 174 VAL n 1 175 ILE n 1 176 GLU n 1 177 ILE n 1 178 PRO n 1 179 GLY n 1 180 PHE n 1 181 GLY n 1 182 ASN n 1 183 LEU n 1 184 SER n 1 185 ALA n 1 186 VAL n 1 187 THR n 1 188 ILE n 1 189 CYS n 1 190 ASP n 1 191 GLU n 1 192 LEU n 1 193 LYS n 1 194 ILE n 1 195 GLN n 1 196 SER n 1 197 GLN n 1 198 ASN n 1 199 ASP n 1 200 ARG n 1 201 GLU n 1 202 LYS n 1 203 LEU n 1 204 ALA n 1 205 GLU n 1 206 ALA n 1 207 LYS n 1 208 GLU n 1 209 LYS n 1 210 ILE n 1 211 TYR n 1 212 LEU n 1 213 LYS n 1 214 GLY n 1 215 PHE n 1 216 TYR n 1 217 GLU n 1 218 GLY n 1 219 ILE n 1 220 MSE n 1 221 LEU n 1 222 VAL n 1 223 ASP n 1 224 GLY n 1 225 PHE n 1 226 LYS n 1 227 GLY n 1 228 GLN n 1 229 LYS n 1 230 VAL n 1 231 GLN n 1 232 ASP n 1 233 VAL n 1 234 LYS n 1 235 LYS n 1 236 THR n 1 237 ILE n 1 238 GLN n 1 239 LYS n 1 240 LYS n 1 241 MSE n 1 242 ILE n 1 243 ASP n 1 244 ALA n 1 245 GLY n 1 246 ASP n 1 247 ALA n 1 248 LEU n 1 249 ILE n 1 250 TYR n 1 251 MSE n 1 252 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'PPROEX HTB' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2WFD 1 ? ? 2WFD ? 2 UNP SYLC_HUMAN 1 ? ? Q9P2J5 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2WFD A 1 ? 2 ? 2WFD 258 ? 259 ? 258 259 2 2 2WFD A 3 ? 252 ? Q9P2J5 260 ? 509 ? 260 509 3 1 2WFD B 1 ? 2 ? 2WFD 258 ? 259 ? 258 259 4 2 2WFD B 3 ? 252 ? Q9P2J5 260 ? 509 ? 260 509 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2WFD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.45 _exptl_crystal.density_percent_sol 63.2 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.2 M SODIUM CITRATE TRIBASIC DIHYDRATE PH 8.3, 20% W/V POLYETHYLENE GLYCOL 3350' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 _diffrn_source.pdbx_wavelength 0.9795 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2WFD _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.00 _reflns.d_resolution_high 3.00 _reflns.number_obs 15008 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.15 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 7.46 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.12 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 3.25 _reflns_shell.d_res_low 3.30 _reflns_shell.percent_possible_all 99.5 _reflns_shell.Rmerge_I_obs 0.66 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.98 _reflns_shell.pdbx_redundancy 3.16 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2WFD _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 11198 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.24 _refine.ls_d_res_high 3.25 _refine.ls_percent_reflns_obs 100.0 _refine.ls_R_factor_obs 0.204 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.202 _refine.ls_R_factor_R_free 0.240 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.200 _refine.ls_number_reflns_R_free 612 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.920 _refine.correlation_coeff_Fo_to_Fc_free 0.894 _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES RESIDUAL ONLY' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.471 _refine.overall_SU_ML 0.378 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 50.954 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3922 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 3922 _refine_hist.d_res_high 3.25 _refine_hist.d_res_low 29.24 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.022 ? 3990 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 2788 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.318 2.004 ? 5380 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.852 3.000 ? 6886 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.816 5.000 ? 502 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 43.273 25.526 ? 152 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.806 15.000 ? 770 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.321 15.000 ? 14 'X-RAY DIFFRACTION' ? r_chiral_restr 0.069 0.200 ? 614 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.021 ? 4318 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 710 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.336 1.500 ? 2508 'X-RAY DIFFRACTION' ? r_mcbond_other 0.043 1.500 ? 1018 'X-RAY DIFFRACTION' ? r_mcangle_it 0.650 2.000 ? 4064 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 0.943 3.000 ? 1482 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 1.571 4.500 ? 1316 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 1 A 3019 0.03 0.05 'tight positional' 1 1 'X-RAY DIFFRACTION' ? ? ? 2 B 3019 0.03 0.05 'tight positional' 1 2 'X-RAY DIFFRACTION' ? ? ? 1 A 3019 0.88 5.00 'tight thermal' 1 3 'X-RAY DIFFRACTION' ? ? ? 2 B 3019 0.88 5.00 'tight thermal' 1 4 'X-RAY DIFFRACTION' ? ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.25 _refine_ls_shell.d_res_low 3.33 _refine_ls_shell.number_reflns_R_work 812 _refine_ls_shell.R_factor_R_work 0.3000 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.2500 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 46 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _struct_ncs_dom.id _struct_ncs_dom.details _struct_ncs_dom.pdbx_ens_id 1 A 1 2 B 1 # loop_ _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.selection_details 1 A 258 A 401 1 1 ? ? ? ? ? ? ? ? 1 ? 2 B 258 B 401 1 1 ? ? ? ? ? ? ? ? 1 ? 1 A 425 A 509 2 1 ? ? ? ? ? ? ? ? 1 ? 2 B 425 B 509 2 1 ? ? ? ? ? ? ? ? 1 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 2WFD _struct.title 'Structure of the human cytosolic leucyl-tRNA synthetase editing domain' _struct.pdbx_descriptor 'LEUCYL-TRNA SYNTHETASE, CYTOPLASMIC (E.C.6.1.1.4)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2WFD _struct_keywords.pdbx_keywords LIGASE _struct_keywords.text ;AMINOACYL-TRNA SYNTHETASE, PHOSPHOPROTEIN, EDITING DOMAIN, NUCLEOTIDE-BINDING, HYDROLYSIS OF MIS-CHARGED TRNAS, PROTEIN BIOSYNTHESIS, LEUCYL-TRNA SYNTHETASE, HUMAN, LIGASE, CYTOPLASM, ATP-BINDING, POLYMORPHISM ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 19 ? LYS A 26 ? PRO A 276 LYS A 283 5 ? 8 HELX_P HELX_P2 2 ARG A 38 ? MSE A 42 ? ARG A 295 MSE A 299 5 ? 5 HELX_P HELX_P3 3 THR A 70 ? MSE A 77 ? THR A 327 MSE A 334 1 ? 8 HELX_P HELX_P4 4 SER A 139 ? LYS A 152 ? SER A 396 LYS A 409 1 ? 14 HELX_P HELX_P5 5 GLN A 153 ? LYS A 158 ? GLN A 410 LYS A 415 1 ? 6 HELX_P HELX_P6 6 LEU A 183 ? LEU A 192 ? LEU A 440 LEU A 449 1 ? 10 HELX_P HELX_P7 7 ASP A 199 ? GLY A 218 ? ASP A 456 GLY A 475 1 ? 20 HELX_P HELX_P8 8 LYS A 229 ? MSE A 241 ? LYS A 486 MSE A 498 1 ? 13 HELX_P HELX_P9 9 PRO B 19 ? LYS B 26 ? PRO B 276 LYS B 283 5 ? 8 HELX_P HELX_P10 10 ARG B 38 ? MSE B 42 ? ARG B 295 MSE B 299 5 ? 5 HELX_P HELX_P11 11 THR B 70 ? MSE B 77 ? THR B 327 MSE B 334 1 ? 8 HELX_P HELX_P12 12 SER B 139 ? LYS B 152 ? SER B 396 LYS B 409 1 ? 14 HELX_P HELX_P13 13 LYS B 152 ? ALA B 157 ? LYS B 409 ALA B 414 1 ? 6 HELX_P HELX_P14 14 LYS B 158 ? GLY B 160 ? LYS B 415 GLY B 417 5 ? 3 HELX_P HELX_P15 15 LEU B 183 ? LEU B 192 ? LEU B 440 LEU B 449 1 ? 10 HELX_P HELX_P16 16 ASP B 199 ? GLY B 218 ? ASP B 456 GLY B 475 1 ? 20 HELX_P HELX_P17 17 LYS B 229 ? MSE B 241 ? LYS B 486 MSE B 498 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 1 C ? ? ? 1_555 A MSE 2 N ? ? A ALA 258 A MSE 259 1_555 ? ? ? ? ? ? ? 1.346 ? covale2 covale ? ? A MSE 2 C ? ? ? 1_555 A GLY 3 N ? ? A MSE 259 A GLY 260 1_555 ? ? ? ? ? ? ? 1.332 ? covale3 covale ? ? A THR 41 C ? ? ? 1_555 A MSE 42 N ? ? A THR 298 A MSE 299 1_555 ? ? ? ? ? ? ? 1.330 ? covale4 covale ? ? A MSE 42 C ? ? ? 1_555 A PHE 43 N ? ? A MSE 299 A PHE 300 1_555 ? ? ? ? ? ? ? 1.332 ? covale5 covale ? ? A ASP 53 C ? ? ? 1_555 A MSE 54 N ? ? A ASP 310 A MSE 311 1_555 ? ? ? ? ? ? ? 1.328 ? covale6 covale ? ? A MSE 54 C ? ? ? 1_555 A LYS 55 N ? ? A MSE 311 A LYS 312 1_555 ? ? ? ? ? ? ? 1.332 ? covale7 covale ? ? A ASN 76 C ? ? ? 1_555 A MSE 77 N ? ? A ASN 333 A MSE 334 1_555 ? ? ? ? ? ? ? 1.328 ? covale8 covale ? ? A MSE 77 C ? ? ? 1_555 A SER 78 N ? ? A MSE 334 A SER 335 1_555 ? ? ? ? ? ? ? 1.330 ? covale9 covale ? ? A LEU 95 C ? ? ? 1_555 A MSE 96 N ? ? A LEU 352 A MSE 353 1_555 ? ? ? ? ? ? ? 1.330 ? covale10 covale ? ? A MSE 96 C ? ? ? 1_555 A GLY 97 N ? ? A MSE 353 A GLY 354 1_555 ? ? ? ? ? ? ? 1.324 ? covale11 covale ? ? A PRO 119 C ? ? ? 1_555 A MSE 120 N ? ? A PRO 376 A MSE 377 1_555 ? ? ? ? ? ? ? 1.332 ? covale12 covale ? ? A MSE 120 C ? ? ? 1_555 A LEU 121 N ? ? A MSE 377 A LEU 378 1_555 ? ? ? ? ? ? ? 1.324 ? covale13 covale ? ? A ASP 164 C ? ? ? 1_555 A MSE 165 N ? ? A ASP 421 A MSE 422 1_555 ? ? ? ? ? ? ? 1.338 ? covale14 covale ? ? A MSE 165 C ? ? ? 1_555 A VAL 166 N ? ? A MSE 422 A VAL 423 1_555 ? ? ? ? ? ? ? 1.334 ? covale15 covale ? ? A ILE 219 C ? ? ? 1_555 A MSE 220 N ? ? A ILE 476 A MSE 477 1_555 ? ? ? ? ? ? ? 1.329 ? covale16 covale ? ? A MSE 220 C ? ? ? 1_555 A LEU 221 N ? ? A MSE 477 A LEU 478 1_555 ? ? ? ? ? ? ? 1.333 ? covale17 covale ? ? A LYS 240 C ? ? ? 1_555 A MSE 241 N ? ? A LYS 497 A MSE 498 1_555 ? ? ? ? ? ? ? 1.325 ? covale18 covale ? ? A MSE 241 C ? ? ? 1_555 A ILE 242 N ? ? A MSE 498 A ILE 499 1_555 ? ? ? ? ? ? ? 1.328 ? covale19 covale ? ? A TYR 250 C ? ? ? 1_555 A MSE 251 N ? ? A TYR 507 A MSE 508 1_555 ? ? ? ? ? ? ? 1.327 ? covale20 covale ? ? A MSE 251 C ? ? ? 1_555 A GLU 252 N ? ? A MSE 508 A GLU 509 1_555 ? ? ? ? ? ? ? 1.331 ? covale21 covale ? ? B ALA 1 C ? ? ? 1_555 B MSE 2 N ? ? B ALA 258 B MSE 259 1_555 ? ? ? ? ? ? ? 1.337 ? covale22 covale ? ? B MSE 2 C ? ? ? 1_555 B GLY 3 N ? ? B MSE 259 B GLY 260 1_555 ? ? ? ? ? ? ? 1.325 ? covale23 covale ? ? B THR 41 C ? ? ? 1_555 B MSE 42 N ? ? B THR 298 B MSE 299 1_555 ? ? ? ? ? ? ? 1.325 ? covale24 covale ? ? B MSE 42 C ? ? ? 1_555 B PHE 43 N ? ? B MSE 299 B PHE 300 1_555 ? ? ? ? ? ? ? 1.326 ? covale25 covale ? ? B ASP 53 C ? ? ? 1_555 B MSE 54 N ? ? B ASP 310 B MSE 311 1_555 ? ? ? ? ? ? ? 1.325 ? covale26 covale ? ? B MSE 54 C ? ? ? 1_555 B LYS 55 N ? ? B MSE 311 B LYS 312 1_555 ? ? ? ? ? ? ? 1.331 ? covale27 covale ? ? B ASN 76 C ? ? ? 1_555 B MSE 77 N ? ? B ASN 333 B MSE 334 1_555 ? ? ? ? ? ? ? 1.325 ? covale28 covale ? ? B MSE 77 C ? ? ? 1_555 B SER 78 N ? ? B MSE 334 B SER 335 1_555 ? ? ? ? ? ? ? 1.331 ? covale29 covale ? ? B LEU 95 C ? ? ? 1_555 B MSE 96 N ? ? B LEU 352 B MSE 353 1_555 ? ? ? ? ? ? ? 1.326 ? covale30 covale ? ? B MSE 96 C ? ? ? 1_555 B GLY 97 N ? ? B MSE 353 B GLY 354 1_555 ? ? ? ? ? ? ? 1.322 ? covale31 covale ? ? B PRO 119 C ? ? ? 1_555 B MSE 120 N ? ? B PRO 376 B MSE 377 1_555 ? ? ? ? ? ? ? 1.336 ? covale32 covale ? ? B MSE 120 C ? ? ? 1_555 B LEU 121 N ? ? B MSE 377 B LEU 378 1_555 ? ? ? ? ? ? ? 1.327 ? covale33 covale ? ? B ASP 164 C ? ? ? 1_555 B MSE 165 N ? ? B ASP 421 B MSE 422 1_555 ? ? ? ? ? ? ? 1.336 ? covale34 covale ? ? B MSE 165 C ? ? ? 1_555 B VAL 166 N ? ? B MSE 422 B VAL 423 1_555 ? ? ? ? ? ? ? 1.333 ? covale35 covale ? ? B ILE 219 C ? ? ? 1_555 B MSE 220 N ? ? B ILE 476 B MSE 477 1_555 ? ? ? ? ? ? ? 1.338 ? covale36 covale ? ? B MSE 220 C ? ? ? 1_555 B LEU 221 N ? ? B MSE 477 B LEU 478 1_555 ? ? ? ? ? ? ? 1.330 ? covale37 covale ? ? B LYS 240 C ? ? ? 1_555 B MSE 241 N ? ? B LYS 497 B MSE 498 1_555 ? ? ? ? ? ? ? 1.325 ? covale38 covale ? ? B MSE 241 C ? ? ? 1_555 B ILE 242 N ? ? B MSE 498 B ILE 499 1_555 ? ? ? ? ? ? ? 1.327 ? covale39 covale ? ? B TYR 250 C ? ? ? 1_555 B MSE 251 N ? ? B TYR 507 B MSE 508 1_555 ? ? ? ? ? ? ? 1.326 ? covale40 covale ? ? B MSE 251 C ? ? ? 1_555 B GLU 252 N ? ? B MSE 508 B GLU 509 1_555 ? ? ? ? ? ? ? 1.333 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 3 A . ? GLY 260 A PRO 4 A ? PRO 261 A 1 12.92 2 GLU 16 A . ? GLU 273 A PRO 17 A ? PRO 274 A 1 10.38 3 GLY 3 B . ? GLY 260 B PRO 4 B ? PRO 261 B 1 11.69 4 GLU 16 B . ? GLU 273 B PRO 17 B ? PRO 274 B 1 10.82 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 6 ? AB ? 9 ? BA ? 6 ? BB ? 9 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? parallel AA 4 5 ? anti-parallel AA 5 6 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? parallel AB 4 5 ? anti-parallel AB 5 6 ? anti-parallel AB 6 7 ? anti-parallel AB 7 8 ? parallel AB 8 9 ? anti-parallel BA 1 2 ? anti-parallel BA 2 3 ? anti-parallel BA 3 4 ? parallel BA 4 5 ? anti-parallel BA 5 6 ? anti-parallel BB 1 2 ? anti-parallel BB 2 3 ? anti-parallel BB 3 4 ? parallel BB 4 5 ? anti-parallel BB 5 6 ? anti-parallel BB 6 7 ? anti-parallel BB 7 8 ? parallel BB 8 9 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 VAL A 91 ? GLU A 94 ? VAL A 348 GLU A 351 AA 2 ILE A 57 ? GLU A 60 ? ILE A 314 GLU A 317 AA 3 ILE A 66 ? CYS A 69 ? ILE A 323 CYS A 326 AA 4 ILE A 30 ? THR A 36 ? ILE A 287 THR A 293 AA 5 TYR A 7 ? LEU A 15 ? TYR A 264 LEU A 272 AA 6 ALA A 247 ? TYR A 250 ? ALA A 504 TYR A 507 AB 1 VAL A 91 ? GLU A 94 ? VAL A 348 GLU A 351 AB 2 ILE A 57 ? GLU A 60 ? ILE A 314 GLU A 317 AB 3 ILE A 66 ? CYS A 69 ? ILE A 323 CYS A 326 AB 4 ILE A 30 ? THR A 36 ? ILE A 287 THR A 293 AB 5 TYR A 7 ? LEU A 15 ? TYR A 264 LEU A 272 AB 6 SER A 104 ? SER A 106 ? SER A 361 SER A 363 AB 7 ILE A 115 ? PRO A 119 ? ILE A 372 PRO A 376 AB 8 ASN A 47 ? VAL A 50 ? ASN A 304 VAL A 307 AB 9 VAL A 132 ? SER A 134 ? VAL A 389 SER A 391 BA 1 VAL B 91 ? GLU B 94 ? VAL B 348 GLU B 351 BA 2 ILE B 57 ? GLU B 60 ? ILE B 314 GLU B 317 BA 3 ILE B 66 ? CYS B 69 ? ILE B 323 CYS B 326 BA 4 ILE B 30 ? THR B 36 ? ILE B 287 THR B 293 BA 5 TYR B 7 ? LEU B 15 ? TYR B 264 LEU B 272 BA 6 ALA B 247 ? TYR B 250 ? ALA B 504 TYR B 507 BB 1 VAL B 91 ? GLU B 94 ? VAL B 348 GLU B 351 BB 2 ILE B 57 ? GLU B 60 ? ILE B 314 GLU B 317 BB 3 ILE B 66 ? CYS B 69 ? ILE B 323 CYS B 326 BB 4 ILE B 30 ? THR B 36 ? ILE B 287 THR B 293 BB 5 TYR B 7 ? LEU B 15 ? TYR B 264 LEU B 272 BB 6 SER B 104 ? SER B 106 ? SER B 361 SER B 363 BB 7 ILE B 115 ? PRO B 119 ? ILE B 372 PRO B 376 BB 8 ASN B 47 ? VAL B 50 ? ASN B 304 VAL B 307 BB 9 VAL B 132 ? SER B 134 ? VAL B 389 SER B 391 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N VAL A 92 ? N VAL A 349 O GLY A 58 ? O GLY A 315 AA 2 3 N PHE A 59 ? N PHE A 316 O PHE A 67 ? O PHE A 324 AA 3 4 N ILE A 68 ? N ILE A 325 O PHE A 31 ? O PHE A 288 AA 4 5 N THR A 36 ? N THR A 293 O THR A 8 ? O THR A 265 AA 5 6 N LEU A 9 ? N LEU A 266 O LEU A 248 ? O LEU A 505 AB 1 2 N VAL A 92 ? N VAL A 349 O GLY A 58 ? O GLY A 315 AB 2 3 N PHE A 59 ? N PHE A 316 O PHE A 67 ? O PHE A 324 AB 3 4 N ILE A 68 ? N ILE A 325 O PHE A 31 ? O PHE A 288 AB 4 5 N THR A 36 ? N THR A 293 O THR A 8 ? O THR A 265 AB 5 6 N LEU A 15 ? N LEU A 272 O SER A 104 ? O SER A 361 AB 6 7 N LEU A 105 ? N LEU A 362 O ILE A 115 ? O ILE A 372 AB 7 8 N LEU A 118 ? N LEU A 375 O CYS A 48 ? O CYS A 305 AB 8 9 N TRP A 49 ? N TRP A 306 O VAL A 132 ? O VAL A 389 BA 1 2 N VAL B 92 ? N VAL B 349 O GLY B 58 ? O GLY B 315 BA 2 3 N PHE B 59 ? N PHE B 316 O PHE B 67 ? O PHE B 324 BA 3 4 N ILE B 68 ? N ILE B 325 O PHE B 31 ? O PHE B 288 BA 4 5 N THR B 36 ? N THR B 293 O THR B 8 ? O THR B 265 BA 5 6 N LEU B 9 ? N LEU B 266 O LEU B 248 ? O LEU B 505 BB 1 2 N VAL B 92 ? N VAL B 349 O GLY B 58 ? O GLY B 315 BB 2 3 N PHE B 59 ? N PHE B 316 O PHE B 67 ? O PHE B 324 BB 3 4 N ILE B 68 ? N ILE B 325 O PHE B 31 ? O PHE B 288 BB 4 5 N THR B 36 ? N THR B 293 O THR B 8 ? O THR B 265 BB 5 6 N LEU B 15 ? N LEU B 272 O SER B 104 ? O SER B 361 BB 6 7 N LEU B 105 ? N LEU B 362 O ILE B 115 ? O ILE B 372 BB 7 8 N LEU B 118 ? N LEU B 375 O CYS B 48 ? O CYS B 305 BB 8 9 N TRP B 49 ? N TRP B 306 O VAL B 132 ? O VAL B 389 # _database_PDB_matrix.entry_id 2WFD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2WFD _atom_sites.fract_transf_matrix[1][1] 0.010578 _atom_sites.fract_transf_matrix[1][2] 0.006107 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012214 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006720 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 258 258 ALA ALA A . n A 1 2 MSE 2 259 259 MSE MSE A . n A 1 3 GLY 3 260 260 GLY GLY A . n A 1 4 PRO 4 261 261 PRO PRO A . n A 1 5 GLN 5 262 262 GLN GLN A . n A 1 6 GLU 6 263 263 GLU GLU A . n A 1 7 TYR 7 264 264 TYR TYR A . n A 1 8 THR 8 265 265 THR THR A . n A 1 9 LEU 9 266 266 LEU LEU A . n A 1 10 LEU 10 267 267 LEU LEU A . n A 1 11 LYS 11 268 268 LYS LYS A . n A 1 12 LEU 12 269 269 LEU LEU A . n A 1 13 LYS 13 270 270 LYS LYS A . n A 1 14 VAL 14 271 271 VAL VAL A . n A 1 15 LEU 15 272 272 LEU LEU A . n A 1 16 GLU 16 273 273 GLU GLU A . n A 1 17 PRO 17 274 274 PRO PRO A . n A 1 18 TYR 18 275 275 TYR TYR A . n A 1 19 PRO 19 276 276 PRO PRO A . n A 1 20 SER 20 277 277 SER SER A . n A 1 21 LYS 21 278 278 LYS LYS A . n A 1 22 LEU 22 279 279 LEU LEU A . n A 1 23 SER 23 280 280 SER SER A . n A 1 24 GLY 24 281 281 GLY GLY A . n A 1 25 LEU 25 282 282 LEU LEU A . n A 1 26 LYS 26 283 283 LYS LYS A . n A 1 27 GLY 27 284 284 GLY GLY A . n A 1 28 LYS 28 285 285 LYS LYS A . n A 1 29 ASN 29 286 286 ASN ASN A . n A 1 30 ILE 30 287 287 ILE ILE A . n A 1 31 PHE 31 288 288 PHE PHE A . n A 1 32 LEU 32 289 289 LEU LEU A . n A 1 33 VAL 33 290 290 VAL VAL A . n A 1 34 ALA 34 291 291 ALA ALA A . n A 1 35 ALA 35 292 292 ALA ALA A . n A 1 36 THR 36 293 293 THR THR A . n A 1 37 LEU 37 294 294 LEU LEU A . n A 1 38 ARG 38 295 295 ARG ARG A . n A 1 39 PRO 39 296 296 PRO PRO A . n A 1 40 GLU 40 297 297 GLU GLU A . n A 1 41 THR 41 298 298 THR THR A . n A 1 42 MSE 42 299 299 MSE MSE A . n A 1 43 PHE 43 300 300 PHE PHE A . n A 1 44 GLY 44 301 301 GLY GLY A . n A 1 45 GLN 45 302 302 GLN GLN A . n A 1 46 THR 46 303 303 THR THR A . n A 1 47 ASN 47 304 304 ASN ASN A . n A 1 48 CYS 48 305 305 CYS CYS A . n A 1 49 TRP 49 306 306 TRP TRP A . n A 1 50 VAL 50 307 307 VAL VAL A . n A 1 51 ARG 51 308 308 ARG ARG A . n A 1 52 PRO 52 309 309 PRO PRO A . n A 1 53 ASP 53 310 310 ASP ASP A . n A 1 54 MSE 54 311 311 MSE MSE A . n A 1 55 LYS 55 312 312 LYS LYS A . n A 1 56 TYR 56 313 313 TYR TYR A . n A 1 57 ILE 57 314 314 ILE ILE A . n A 1 58 GLY 58 315 315 GLY GLY A . n A 1 59 PHE 59 316 316 PHE PHE A . n A 1 60 GLU 60 317 317 GLU GLU A . n A 1 61 THR 61 318 318 THR THR A . n A 1 62 VAL 62 319 319 VAL VAL A . n A 1 63 ASN 63 320 320 ASN ASN A . n A 1 64 GLY 64 321 321 GLY GLY A . n A 1 65 ASP 65 322 322 ASP ASP A . n A 1 66 ILE 66 323 323 ILE ILE A . n A 1 67 PHE 67 324 324 PHE PHE A . n A 1 68 ILE 68 325 325 ILE ILE A . n A 1 69 CYS 69 326 326 CYS CYS A . n A 1 70 THR 70 327 327 THR THR A . n A 1 71 GLN 71 328 328 GLN GLN A . n A 1 72 LYS 72 329 329 LYS LYS A . n A 1 73 ALA 73 330 330 ALA ALA A . n A 1 74 ALA 74 331 331 ALA ALA A . n A 1 75 ARG 75 332 332 ARG ARG A . n A 1 76 ASN 76 333 333 ASN ASN A . n A 1 77 MSE 77 334 334 MSE MSE A . n A 1 78 SER 78 335 335 SER SER A . n A 1 79 TYR 79 336 336 TYR TYR A . n A 1 80 GLN 80 337 337 GLN GLN A . n A 1 81 GLY 81 338 338 GLY GLY A . n A 1 82 PHE 82 339 339 PHE PHE A . n A 1 83 THR 83 340 340 THR THR A . n A 1 84 LYS 84 341 341 LYS LYS A . n A 1 85 ASP 85 342 342 ASP ASP A . n A 1 86 ASN 86 343 343 ASN ASN A . n A 1 87 GLY 87 344 344 GLY GLY A . n A 1 88 VAL 88 345 345 VAL VAL A . n A 1 89 VAL 89 346 346 VAL VAL A . n A 1 90 PRO 90 347 347 PRO PRO A . n A 1 91 VAL 91 348 348 VAL VAL A . n A 1 92 VAL 92 349 349 VAL VAL A . n A 1 93 LYS 93 350 350 LYS LYS A . n A 1 94 GLU 94 351 351 GLU GLU A . n A 1 95 LEU 95 352 352 LEU LEU A . n A 1 96 MSE 96 353 353 MSE MSE A . n A 1 97 GLY 97 354 354 GLY GLY A . n A 1 98 GLU 98 355 355 GLU GLU A . n A 1 99 GLU 99 356 356 GLU GLU A . n A 1 100 ILE 100 357 357 ILE ILE A . n A 1 101 LEU 101 358 358 LEU LEU A . n A 1 102 GLY 102 359 359 GLY GLY A . n A 1 103 ALA 103 360 360 ALA ALA A . n A 1 104 SER 104 361 361 SER SER A . n A 1 105 LEU 105 362 362 LEU LEU A . n A 1 106 SER 106 363 363 SER SER A . n A 1 107 ALA 107 364 364 ALA ALA A . n A 1 108 PRO 108 365 365 PRO PRO A . n A 1 109 LEU 109 366 366 LEU LEU A . n A 1 110 THR 110 367 367 THR THR A . n A 1 111 SER 111 368 368 SER SER A . n A 1 112 TYR 112 369 369 TYR TYR A . n A 1 113 LYS 113 370 370 LYS LYS A . n A 1 114 VAL 114 371 371 VAL VAL A . n A 1 115 ILE 115 372 372 ILE ILE A . n A 1 116 TYR 116 373 373 TYR TYR A . n A 1 117 VAL 117 374 374 VAL VAL A . n A 1 118 LEU 118 375 375 LEU LEU A . n A 1 119 PRO 119 376 376 PRO PRO A . n A 1 120 MSE 120 377 377 MSE MSE A . n A 1 121 LEU 121 378 378 LEU LEU A . n A 1 122 THR 122 379 379 THR THR A . n A 1 123 ILE 123 380 380 ILE ILE A . n A 1 124 LYS 124 381 381 LYS LYS A . n A 1 125 GLU 125 382 382 GLU GLU A . n A 1 126 ASP 126 383 383 ASP ASP A . n A 1 127 LYS 127 384 384 LYS LYS A . n A 1 128 GLY 128 385 385 GLY GLY A . n A 1 129 THR 129 386 386 THR THR A . n A 1 130 GLY 130 387 387 GLY GLY A . n A 1 131 VAL 131 388 388 VAL VAL A . n A 1 132 VAL 132 389 389 VAL VAL A . n A 1 133 THR 133 390 390 THR THR A . n A 1 134 SER 134 391 391 SER SER A . n A 1 135 VAL 135 392 392 VAL VAL A . n A 1 136 PRO 136 393 393 PRO PRO A . n A 1 137 SER 137 394 394 SER SER A . n A 1 138 ASP 138 395 395 ASP ASP A . n A 1 139 SER 139 396 396 SER SER A . n A 1 140 PRO 140 397 397 PRO PRO A . n A 1 141 ASP 141 398 398 ASP ASP A . n A 1 142 ASP 142 399 399 ASP ASP A . n A 1 143 ILE 143 400 400 ILE ILE A . n A 1 144 ALA 144 401 401 ALA ALA A . n A 1 145 ALA 145 402 402 ALA ALA A . n A 1 146 LEU 146 403 403 LEU LEU A . n A 1 147 ARG 147 404 404 ARG ARG A . n A 1 148 ASP 148 405 405 ASP ASP A . n A 1 149 LEU 149 406 406 LEU LEU A . n A 1 150 LYS 150 407 407 LYS LYS A . n A 1 151 LYS 151 408 408 LYS LYS A . n A 1 152 LYS 152 409 409 LYS LYS A . n A 1 153 GLN 153 410 410 GLN GLN A . n A 1 154 ALA 154 411 411 ALA ALA A . n A 1 155 LEU 155 412 412 LEU LEU A . n A 1 156 ARG 156 413 413 ARG ARG A . n A 1 157 ALA 157 414 414 ALA ALA A . n A 1 158 LYS 158 415 415 LYS LYS A . n A 1 159 TYR 159 416 416 TYR TYR A . n A 1 160 GLY 160 417 417 GLY GLY A . n A 1 161 ILE 161 418 418 ILE ILE A . n A 1 162 ARG 162 419 419 ARG ARG A . n A 1 163 ASP 163 420 420 ASP ASP A . n A 1 164 ASP 164 421 421 ASP ASP A . n A 1 165 MSE 165 422 422 MSE MSE A . n A 1 166 VAL 166 423 423 VAL VAL A . n A 1 167 LEU 167 424 424 LEU LEU A . n A 1 168 PRO 168 425 425 PRO PRO A . n A 1 169 PHE 169 426 426 PHE PHE A . n A 1 170 GLU 170 427 427 GLU GLU A . n A 1 171 PRO 171 428 428 PRO PRO A . n A 1 172 VAL 172 429 429 VAL VAL A . n A 1 173 PRO 173 430 430 PRO PRO A . n A 1 174 VAL 174 431 431 VAL VAL A . n A 1 175 ILE 175 432 432 ILE ILE A . n A 1 176 GLU 176 433 433 GLU GLU A . n A 1 177 ILE 177 434 434 ILE ILE A . n A 1 178 PRO 178 435 435 PRO PRO A . n A 1 179 GLY 179 436 436 GLY GLY A . n A 1 180 PHE 180 437 437 PHE PHE A . n A 1 181 GLY 181 438 438 GLY GLY A . n A 1 182 ASN 182 439 439 ASN ASN A . n A 1 183 LEU 183 440 440 LEU LEU A . n A 1 184 SER 184 441 441 SER SER A . n A 1 185 ALA 185 442 442 ALA ALA A . n A 1 186 VAL 186 443 443 VAL VAL A . n A 1 187 THR 187 444 444 THR THR A . n A 1 188 ILE 188 445 445 ILE ILE A . n A 1 189 CYS 189 446 446 CYS CYS A . n A 1 190 ASP 190 447 447 ASP ASP A . n A 1 191 GLU 191 448 448 GLU GLU A . n A 1 192 LEU 192 449 449 LEU LEU A . n A 1 193 LYS 193 450 450 LYS LYS A . n A 1 194 ILE 194 451 451 ILE ILE A . n A 1 195 GLN 195 452 452 GLN GLN A . n A 1 196 SER 196 453 453 SER SER A . n A 1 197 GLN 197 454 454 GLN GLN A . n A 1 198 ASN 198 455 455 ASN ASN A . n A 1 199 ASP 199 456 456 ASP ASP A . n A 1 200 ARG 200 457 457 ARG ARG A . n A 1 201 GLU 201 458 458 GLU GLU A . n A 1 202 LYS 202 459 459 LYS LYS A . n A 1 203 LEU 203 460 460 LEU LEU A . n A 1 204 ALA 204 461 461 ALA ALA A . n A 1 205 GLU 205 462 462 GLU GLU A . n A 1 206 ALA 206 463 463 ALA ALA A . n A 1 207 LYS 207 464 464 LYS LYS A . n A 1 208 GLU 208 465 465 GLU GLU A . n A 1 209 LYS 209 466 466 LYS LYS A . n A 1 210 ILE 210 467 467 ILE ILE A . n A 1 211 TYR 211 468 468 TYR TYR A . n A 1 212 LEU 212 469 469 LEU LEU A . n A 1 213 LYS 213 470 470 LYS LYS A . n A 1 214 GLY 214 471 471 GLY GLY A . n A 1 215 PHE 215 472 472 PHE PHE A . n A 1 216 TYR 216 473 473 TYR TYR A . n A 1 217 GLU 217 474 474 GLU GLU A . n A 1 218 GLY 218 475 475 GLY GLY A . n A 1 219 ILE 219 476 476 ILE ILE A . n A 1 220 MSE 220 477 477 MSE MSE A . n A 1 221 LEU 221 478 478 LEU LEU A . n A 1 222 VAL 222 479 479 VAL VAL A . n A 1 223 ASP 223 480 480 ASP ASP A . n A 1 224 GLY 224 481 481 GLY GLY A . n A 1 225 PHE 225 482 482 PHE PHE A . n A 1 226 LYS 226 483 483 LYS LYS A . n A 1 227 GLY 227 484 484 GLY GLY A . n A 1 228 GLN 228 485 485 GLN GLN A . n A 1 229 LYS 229 486 486 LYS LYS A . n A 1 230 VAL 230 487 487 VAL VAL A . n A 1 231 GLN 231 488 488 GLN GLN A . n A 1 232 ASP 232 489 489 ASP ASP A . n A 1 233 VAL 233 490 490 VAL VAL A . n A 1 234 LYS 234 491 491 LYS LYS A . n A 1 235 LYS 235 492 492 LYS LYS A . n A 1 236 THR 236 493 493 THR THR A . n A 1 237 ILE 237 494 494 ILE ILE A . n A 1 238 GLN 238 495 495 GLN GLN A . n A 1 239 LYS 239 496 496 LYS LYS A . n A 1 240 LYS 240 497 497 LYS LYS A . n A 1 241 MSE 241 498 498 MSE MSE A . n A 1 242 ILE 242 499 499 ILE ILE A . n A 1 243 ASP 243 500 500 ASP ASP A . n A 1 244 ALA 244 501 501 ALA ALA A . n A 1 245 GLY 245 502 502 GLY GLY A . n A 1 246 ASP 246 503 503 ASP ASP A . n A 1 247 ALA 247 504 504 ALA ALA A . n A 1 248 LEU 248 505 505 LEU LEU A . n A 1 249 ILE 249 506 506 ILE ILE A . n A 1 250 TYR 250 507 507 TYR TYR A . n A 1 251 MSE 251 508 508 MSE MSE A . n A 1 252 GLU 252 509 509 GLU GLU A . n B 1 1 ALA 1 258 258 ALA ALA B . n B 1 2 MSE 2 259 259 MSE MSE B . n B 1 3 GLY 3 260 260 GLY GLY B . n B 1 4 PRO 4 261 261 PRO PRO B . n B 1 5 GLN 5 262 262 GLN GLN B . n B 1 6 GLU 6 263 263 GLU GLU B . n B 1 7 TYR 7 264 264 TYR TYR B . n B 1 8 THR 8 265 265 THR THR B . n B 1 9 LEU 9 266 266 LEU LEU B . n B 1 10 LEU 10 267 267 LEU LEU B . n B 1 11 LYS 11 268 268 LYS LYS B . n B 1 12 LEU 12 269 269 LEU LEU B . n B 1 13 LYS 13 270 270 LYS LYS B . n B 1 14 VAL 14 271 271 VAL VAL B . n B 1 15 LEU 15 272 272 LEU LEU B . n B 1 16 GLU 16 273 273 GLU GLU B . n B 1 17 PRO 17 274 274 PRO PRO B . n B 1 18 TYR 18 275 275 TYR TYR B . n B 1 19 PRO 19 276 276 PRO PRO B . n B 1 20 SER 20 277 277 SER SER B . n B 1 21 LYS 21 278 278 LYS LYS B . n B 1 22 LEU 22 279 279 LEU LEU B . n B 1 23 SER 23 280 280 SER SER B . n B 1 24 GLY 24 281 281 GLY GLY B . n B 1 25 LEU 25 282 282 LEU LEU B . n B 1 26 LYS 26 283 283 LYS LYS B . n B 1 27 GLY 27 284 284 GLY GLY B . n B 1 28 LYS 28 285 285 LYS LYS B . n B 1 29 ASN 29 286 286 ASN ASN B . n B 1 30 ILE 30 287 287 ILE ILE B . n B 1 31 PHE 31 288 288 PHE PHE B . n B 1 32 LEU 32 289 289 LEU LEU B . n B 1 33 VAL 33 290 290 VAL VAL B . n B 1 34 ALA 34 291 291 ALA ALA B . n B 1 35 ALA 35 292 292 ALA ALA B . n B 1 36 THR 36 293 293 THR THR B . n B 1 37 LEU 37 294 294 LEU LEU B . n B 1 38 ARG 38 295 295 ARG ARG B . n B 1 39 PRO 39 296 296 PRO PRO B . n B 1 40 GLU 40 297 297 GLU GLU B . n B 1 41 THR 41 298 298 THR THR B . n B 1 42 MSE 42 299 299 MSE MSE B . n B 1 43 PHE 43 300 300 PHE PHE B . n B 1 44 GLY 44 301 301 GLY GLY B . n B 1 45 GLN 45 302 302 GLN GLN B . n B 1 46 THR 46 303 303 THR THR B . n B 1 47 ASN 47 304 304 ASN ASN B . n B 1 48 CYS 48 305 305 CYS CYS B . n B 1 49 TRP 49 306 306 TRP TRP B . n B 1 50 VAL 50 307 307 VAL VAL B . n B 1 51 ARG 51 308 308 ARG ARG B . n B 1 52 PRO 52 309 309 PRO PRO B . n B 1 53 ASP 53 310 310 ASP ASP B . n B 1 54 MSE 54 311 311 MSE MSE B . n B 1 55 LYS 55 312 312 LYS LYS B . n B 1 56 TYR 56 313 313 TYR TYR B . n B 1 57 ILE 57 314 314 ILE ILE B . n B 1 58 GLY 58 315 315 GLY GLY B . n B 1 59 PHE 59 316 316 PHE PHE B . n B 1 60 GLU 60 317 317 GLU GLU B . n B 1 61 THR 61 318 318 THR THR B . n B 1 62 VAL 62 319 319 VAL VAL B . n B 1 63 ASN 63 320 320 ASN ASN B . n B 1 64 GLY 64 321 321 GLY GLY B . n B 1 65 ASP 65 322 322 ASP ASP B . n B 1 66 ILE 66 323 323 ILE ILE B . n B 1 67 PHE 67 324 324 PHE PHE B . n B 1 68 ILE 68 325 325 ILE ILE B . n B 1 69 CYS 69 326 326 CYS CYS B . n B 1 70 THR 70 327 327 THR THR B . n B 1 71 GLN 71 328 328 GLN GLN B . n B 1 72 LYS 72 329 329 LYS LYS B . n B 1 73 ALA 73 330 330 ALA ALA B . n B 1 74 ALA 74 331 331 ALA ALA B . n B 1 75 ARG 75 332 332 ARG ARG B . n B 1 76 ASN 76 333 333 ASN ASN B . n B 1 77 MSE 77 334 334 MSE MSE B . n B 1 78 SER 78 335 335 SER SER B . n B 1 79 TYR 79 336 336 TYR TYR B . n B 1 80 GLN 80 337 337 GLN GLN B . n B 1 81 GLY 81 338 338 GLY GLY B . n B 1 82 PHE 82 339 339 PHE PHE B . n B 1 83 THR 83 340 340 THR THR B . n B 1 84 LYS 84 341 341 LYS LYS B . n B 1 85 ASP 85 342 342 ASP ASP B . n B 1 86 ASN 86 343 343 ASN ASN B . n B 1 87 GLY 87 344 344 GLY GLY B . n B 1 88 VAL 88 345 345 VAL VAL B . n B 1 89 VAL 89 346 346 VAL VAL B . n B 1 90 PRO 90 347 347 PRO PRO B . n B 1 91 VAL 91 348 348 VAL VAL B . n B 1 92 VAL 92 349 349 VAL VAL B . n B 1 93 LYS 93 350 350 LYS LYS B . n B 1 94 GLU 94 351 351 GLU GLU B . n B 1 95 LEU 95 352 352 LEU LEU B . n B 1 96 MSE 96 353 353 MSE MSE B . n B 1 97 GLY 97 354 354 GLY GLY B . n B 1 98 GLU 98 355 355 GLU GLU B . n B 1 99 GLU 99 356 356 GLU GLU B . n B 1 100 ILE 100 357 357 ILE ILE B . n B 1 101 LEU 101 358 358 LEU LEU B . n B 1 102 GLY 102 359 359 GLY GLY B . n B 1 103 ALA 103 360 360 ALA ALA B . n B 1 104 SER 104 361 361 SER SER B . n B 1 105 LEU 105 362 362 LEU LEU B . n B 1 106 SER 106 363 363 SER SER B . n B 1 107 ALA 107 364 364 ALA ALA B . n B 1 108 PRO 108 365 365 PRO PRO B . n B 1 109 LEU 109 366 366 LEU LEU B . n B 1 110 THR 110 367 367 THR THR B . n B 1 111 SER 111 368 368 SER SER B . n B 1 112 TYR 112 369 369 TYR TYR B . n B 1 113 LYS 113 370 370 LYS LYS B . n B 1 114 VAL 114 371 371 VAL VAL B . n B 1 115 ILE 115 372 372 ILE ILE B . n B 1 116 TYR 116 373 373 TYR TYR B . n B 1 117 VAL 117 374 374 VAL VAL B . n B 1 118 LEU 118 375 375 LEU LEU B . n B 1 119 PRO 119 376 376 PRO PRO B . n B 1 120 MSE 120 377 377 MSE MSE B . n B 1 121 LEU 121 378 378 LEU LEU B . n B 1 122 THR 122 379 379 THR THR B . n B 1 123 ILE 123 380 380 ILE ILE B . n B 1 124 LYS 124 381 381 LYS LYS B . n B 1 125 GLU 125 382 382 GLU GLU B . n B 1 126 ASP 126 383 383 ASP ASP B . n B 1 127 LYS 127 384 384 LYS LYS B . n B 1 128 GLY 128 385 385 GLY GLY B . n B 1 129 THR 129 386 386 THR THR B . n B 1 130 GLY 130 387 387 GLY GLY B . n B 1 131 VAL 131 388 388 VAL VAL B . n B 1 132 VAL 132 389 389 VAL VAL B . n B 1 133 THR 133 390 390 THR THR B . n B 1 134 SER 134 391 391 SER SER B . n B 1 135 VAL 135 392 392 VAL VAL B . n B 1 136 PRO 136 393 393 PRO PRO B . n B 1 137 SER 137 394 394 SER SER B . n B 1 138 ASP 138 395 395 ASP ASP B . n B 1 139 SER 139 396 396 SER SER B . n B 1 140 PRO 140 397 397 PRO PRO B . n B 1 141 ASP 141 398 398 ASP ASP B . n B 1 142 ASP 142 399 399 ASP ASP B . n B 1 143 ILE 143 400 400 ILE ILE B . n B 1 144 ALA 144 401 401 ALA ALA B . n B 1 145 ALA 145 402 402 ALA ALA B . n B 1 146 LEU 146 403 403 LEU LEU B . n B 1 147 ARG 147 404 404 ARG ARG B . n B 1 148 ASP 148 405 405 ASP ASP B . n B 1 149 LEU 149 406 406 LEU LEU B . n B 1 150 LYS 150 407 407 LYS LYS B . n B 1 151 LYS 151 408 408 LYS LYS B . n B 1 152 LYS 152 409 409 LYS LYS B . n B 1 153 GLN 153 410 410 GLN GLN B . n B 1 154 ALA 154 411 411 ALA ALA B . n B 1 155 LEU 155 412 412 LEU LEU B . n B 1 156 ARG 156 413 413 ARG ARG B . n B 1 157 ALA 157 414 414 ALA ALA B . n B 1 158 LYS 158 415 415 LYS LYS B . n B 1 159 TYR 159 416 416 TYR TYR B . n B 1 160 GLY 160 417 417 GLY GLY B . n B 1 161 ILE 161 418 418 ILE ILE B . n B 1 162 ARG 162 419 419 ARG ARG B . n B 1 163 ASP 163 420 420 ASP ASP B . n B 1 164 ASP 164 421 421 ASP ASP B . n B 1 165 MSE 165 422 422 MSE MSE B . n B 1 166 VAL 166 423 423 VAL VAL B . n B 1 167 LEU 167 424 424 LEU LEU B . n B 1 168 PRO 168 425 425 PRO PRO B . n B 1 169 PHE 169 426 426 PHE PHE B . n B 1 170 GLU 170 427 427 GLU GLU B . n B 1 171 PRO 171 428 428 PRO PRO B . n B 1 172 VAL 172 429 429 VAL VAL B . n B 1 173 PRO 173 430 430 PRO PRO B . n B 1 174 VAL 174 431 431 VAL VAL B . n B 1 175 ILE 175 432 432 ILE ILE B . n B 1 176 GLU 176 433 433 GLU GLU B . n B 1 177 ILE 177 434 434 ILE ILE B . n B 1 178 PRO 178 435 435 PRO PRO B . n B 1 179 GLY 179 436 436 GLY GLY B . n B 1 180 PHE 180 437 437 PHE PHE B . n B 1 181 GLY 181 438 438 GLY GLY B . n B 1 182 ASN 182 439 439 ASN ASN B . n B 1 183 LEU 183 440 440 LEU LEU B . n B 1 184 SER 184 441 441 SER SER B . n B 1 185 ALA 185 442 442 ALA ALA B . n B 1 186 VAL 186 443 443 VAL VAL B . n B 1 187 THR 187 444 444 THR THR B . n B 1 188 ILE 188 445 445 ILE ILE B . n B 1 189 CYS 189 446 446 CYS CYS B . n B 1 190 ASP 190 447 447 ASP ASP B . n B 1 191 GLU 191 448 448 GLU GLU B . n B 1 192 LEU 192 449 449 LEU LEU B . n B 1 193 LYS 193 450 450 LYS LYS B . n B 1 194 ILE 194 451 451 ILE ILE B . n B 1 195 GLN 195 452 452 GLN GLN B . n B 1 196 SER 196 453 453 SER SER B . n B 1 197 GLN 197 454 454 GLN GLN B . n B 1 198 ASN 198 455 455 ASN ASN B . n B 1 199 ASP 199 456 456 ASP ASP B . n B 1 200 ARG 200 457 457 ARG ARG B . n B 1 201 GLU 201 458 458 GLU GLU B . n B 1 202 LYS 202 459 459 LYS LYS B . n B 1 203 LEU 203 460 460 LEU LEU B . n B 1 204 ALA 204 461 461 ALA ALA B . n B 1 205 GLU 205 462 462 GLU GLU B . n B 1 206 ALA 206 463 463 ALA ALA B . n B 1 207 LYS 207 464 464 LYS LYS B . n B 1 208 GLU 208 465 465 GLU GLU B . n B 1 209 LYS 209 466 466 LYS LYS B . n B 1 210 ILE 210 467 467 ILE ILE B . n B 1 211 TYR 211 468 468 TYR TYR B . n B 1 212 LEU 212 469 469 LEU LEU B . n B 1 213 LYS 213 470 470 LYS LYS B . n B 1 214 GLY 214 471 471 GLY GLY B . n B 1 215 PHE 215 472 472 PHE PHE B . n B 1 216 TYR 216 473 473 TYR TYR B . n B 1 217 GLU 217 474 474 GLU GLU B . n B 1 218 GLY 218 475 475 GLY GLY B . n B 1 219 ILE 219 476 476 ILE ILE B . n B 1 220 MSE 220 477 477 MSE MSE B . n B 1 221 LEU 221 478 478 LEU LEU B . n B 1 222 VAL 222 479 479 VAL VAL B . n B 1 223 ASP 223 480 480 ASP ASP B . n B 1 224 GLY 224 481 481 GLY GLY B . n B 1 225 PHE 225 482 482 PHE PHE B . n B 1 226 LYS 226 483 483 LYS LYS B . n B 1 227 GLY 227 484 484 GLY GLY B . n B 1 228 GLN 228 485 485 GLN GLN B . n B 1 229 LYS 229 486 486 LYS LYS B . n B 1 230 VAL 230 487 487 VAL VAL B . n B 1 231 GLN 231 488 488 GLN GLN B . n B 1 232 ASP 232 489 489 ASP ASP B . n B 1 233 VAL 233 490 490 VAL VAL B . n B 1 234 LYS 234 491 491 LYS LYS B . n B 1 235 LYS 235 492 492 LYS LYS B . n B 1 236 THR 236 493 493 THR THR B . n B 1 237 ILE 237 494 494 ILE ILE B . n B 1 238 GLN 238 495 495 GLN GLN B . n B 1 239 LYS 239 496 496 LYS LYS B . n B 1 240 LYS 240 497 497 LYS LYS B . n B 1 241 MSE 241 498 498 MSE MSE B . n B 1 242 ILE 242 499 499 ILE ILE B . n B 1 243 ASP 243 500 500 ASP ASP B . n B 1 244 ALA 244 501 501 ALA ALA B . n B 1 245 GLY 245 502 502 GLY GLY B . n B 1 246 ASP 246 503 503 ASP ASP B . n B 1 247 ALA 247 504 504 ALA ALA B . n B 1 248 LEU 248 505 505 LEU LEU B . n B 1 249 ILE 249 506 506 ILE ILE B . n B 1 250 TYR 250 507 507 TYR TYR B . n B 1 251 MSE 251 508 508 MSE MSE B . n B 1 252 GLU 252 509 509 GLU GLU B . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 259 ? MET SELENOMETHIONINE 2 A MSE 42 A MSE 299 ? MET SELENOMETHIONINE 3 A MSE 54 A MSE 311 ? MET SELENOMETHIONINE 4 A MSE 77 A MSE 334 ? MET SELENOMETHIONINE 5 A MSE 96 A MSE 353 ? MET SELENOMETHIONINE 6 A MSE 120 A MSE 377 ? MET SELENOMETHIONINE 7 A MSE 165 A MSE 422 ? MET SELENOMETHIONINE 8 A MSE 220 A MSE 477 ? MET SELENOMETHIONINE 9 A MSE 241 A MSE 498 ? MET SELENOMETHIONINE 10 A MSE 251 A MSE 508 ? MET SELENOMETHIONINE 11 B MSE 2 B MSE 259 ? MET SELENOMETHIONINE 12 B MSE 42 B MSE 299 ? MET SELENOMETHIONINE 13 B MSE 54 B MSE 311 ? MET SELENOMETHIONINE 14 B MSE 77 B MSE 334 ? MET SELENOMETHIONINE 15 B MSE 96 B MSE 353 ? MET SELENOMETHIONINE 16 B MSE 120 B MSE 377 ? MET SELENOMETHIONINE 17 B MSE 165 B MSE 422 ? MET SELENOMETHIONINE 18 B MSE 220 B MSE 477 ? MET SELENOMETHIONINE 19 B MSE 241 B MSE 498 ? MET SELENOMETHIONINE 20 B MSE 251 B MSE 508 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2700 ? 1 MORE -18.93 ? 1 'SSA (A^2)' 21880 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-05-19 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 25.2490 -37.7950 -15.7780 -0.2567 -0.0849 -0.2320 -0.0346 0.0132 -0.0633 4.2893 1.6841 1.6987 2.3531 0.2890 0.0995 0.0355 -0.2551 0.1820 0.1789 -0.0285 0.0712 -0.1952 -0.1560 -0.0069 'X-RAY DIFFRACTION' 2 ? refined 27.4800 -37.8330 -48.7140 -0.2598 -0.0426 -0.1828 -0.1087 0.0193 -0.0400 3.9546 1.7456 4.1614 1.5832 -0.9927 -0.1080 -0.0754 0.5118 0.0413 -0.1161 0.0261 0.2995 0.2456 -1.0905 0.0493 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 258 ? ? A 509 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 258 ? ? B 509 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.5.0070 ? 1 XDS 'data reduction' . ? 2 XSCALE 'data scaling' . ? 3 SHELXD phasing SHARP ? 4 # _pdbx_database_remark.id 700 _pdbx_database_remark.text ; SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, TWO SHEETS ARE DEFINED. ; # _pdbx_entry_details.entry_id 2WFD _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;SELENOMETHIONINE (MSE): PROTEIN WAS SELENOMETHIONINE LABELLED ; _pdbx_entry_details.sequence_details 'EXTRA ALA-MET AT N-TERMINUS FROM CLONING.' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MSE A 259 ? ? 65.10 -161.32 2 1 MSE A 299 ? ? -69.61 2.40 3 1 ASN A 304 ? ? -173.30 -164.17 4 1 CYS A 326 ? ? -171.40 -172.89 5 1 LEU A 366 ? ? 69.23 -54.74 6 1 ASP A 383 ? ? -69.01 -80.31 7 1 VAL A 423 ? ? -130.99 -56.10 8 1 LYS A 450 ? ? 64.77 64.59 9 1 ASN A 455 ? ? -86.85 31.92 10 1 ASP A 456 ? ? -105.26 54.62 11 1 PHE A 482 ? ? -167.39 69.76 12 1 MSE B 259 ? ? 67.27 -161.51 13 1 MSE B 299 ? ? -68.85 1.37 14 1 ASN B 304 ? ? -172.13 -165.17 15 1 CYS B 326 ? ? -172.08 -174.25 16 1 LEU B 366 ? ? 68.24 -56.19 17 1 ASP B 383 ? ? -69.67 -74.99 18 1 ALA B 402 ? ? -61.69 -71.88 19 1 ASP B 421 ? ? -17.22 -44.45 20 1 VAL B 423 ? ? -142.26 -66.97 21 1 ASN B 455 ? ? -87.68 30.27 22 1 ASP B 456 ? ? -104.79 57.76 23 1 PHE B 482 ? ? -165.17 71.07 #