HEADER SPLICING 06-APR-09 2WFH TITLE THE HUMAN SLIT 2 DIMERIZATION DOMAIN D4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SLIT HOMOLOG 2 PROTEIN C-PRODUCT; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DIMERIZATION DOMAIN, RESIDUES 726-907; COMPND 5 SYNONYM: HUMAN SLIT 2 DOMAIN D4, SLIT-2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: HUMAN EMBRYONIC KIDNEY CELLS (HEK 293 SOURCE 7 EBNA); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: MODIFIED PTT3 KEYWDS DEVELOPMENTAL PROTEIN, NEUROGENESIS, SPLICING, GLYCOPROTEIN, LEUCINE- KEYWDS 2 RICH REPEAT, DISULFIDE BOND, DIFFERENTIATION, EGF-LIKE DOMAIN, ID14- KEYWDS 3 EH4, ROUNDABOUT, CHEMOTAXIS, NERVE CELL, MIDLINE, HEPARAN, HEPARIN, KEYWDS 4 SECRETED, GUIDANCE, D4, XDS, LRR, SLIT, AXON, NEURON, PHASER, KEYWDS 5 SULFATE EXPDTA X-RAY DIFFRACTION AUTHOR E.SEIRADAKE,A.C.VON PHILIPSBORN,M.HENRY,M.FRITZ,H.LORTAT-JACOB, AUTHOR 2 M.JAMIN,W.HEMRIKA,M.BASTMEYER,S.CUSACK,A.A.MCCARTHY REVDAT 7 20-NOV-24 2WFH 1 REMARK REVDAT 6 13-DEC-23 2WFH 1 REMARK REVDAT 5 10-JAN-18 2WFH 1 JRNL REVDAT 4 28-SEP-11 2WFH 1 JRNL REVDAT 3 13-JUL-11 2WFH 1 VERSN REVDAT 2 16-JUN-09 2WFH 1 JRNL REVDAT 1 21-APR-09 2WFH 0 JRNL AUTH E.SEIRADAKE,A.C.VON PHILIPSBORN,M.HENRY,M.FRITZ, JRNL AUTH 2 H.LORTAT-JACOB,M.JAMIN,W.HEMRIKA,M.BASTMEYER,S.CUSACK, JRNL AUTH 3 A.A.MCCARTHY JRNL TITL STRUCTURE AND FUNCTIONAL RELEVANCE OF THE SLIT2 JRNL TITL 2 HOMODIMERIZATION DOMAIN. JRNL REF EMBO REP. V. 10 736 2009 JRNL REFN ESSN 1469-3178 JRNL PMID 19498462 JRNL DOI 10.1038/EMBOR.2009.95 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 34545 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1800 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2596 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 125 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2808 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 329 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.97000 REMARK 3 B22 (A**2) : -1.97000 REMARK 3 B33 (A**2) : 3.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.129 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.673 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2891 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1988 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3935 ; 1.461 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4871 ; 0.967 ; 3.007 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 366 ; 6.324 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;40.237 ;24.336 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 517 ;13.406 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;14.294 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 461 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3138 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 531 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 550 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2082 ; 0.200 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1336 ; 0.168 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1411 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 241 ; 0.159 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.142 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 42 ; 0.277 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.175 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2340 ; 0.856 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 724 ; 0.165 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2958 ; 1.052 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1224 ; 1.823 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 974 ; 2.605 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 727 A 907 REMARK 3 ORIGIN FOR THE GROUP (A): 15.9902 -5.5132 22.5413 REMARK 3 T TENSOR REMARK 3 T11: -0.0732 T22: -0.0471 REMARK 3 T33: 0.0250 T12: -0.0220 REMARK 3 T13: 0.0186 T23: -0.0275 REMARK 3 L TENSOR REMARK 3 L11: 0.5199 L22: 1.6666 REMARK 3 L33: 1.3579 L12: 0.1994 REMARK 3 L13: 0.0384 L23: -0.8390 REMARK 3 S TENSOR REMARK 3 S11: 0.0068 S12: 0.0408 S13: -0.1478 REMARK 3 S21: -0.0620 S22: 0.0002 S23: 0.0662 REMARK 3 S31: 0.0782 S32: -0.1243 S33: -0.0070 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 727 B 907 REMARK 3 ORIGIN FOR THE GROUP (A): 36.1828 7.8606 18.2627 REMARK 3 T TENSOR REMARK 3 T11: -0.0685 T22: -0.0576 REMARK 3 T33: 0.0136 T12: -0.0167 REMARK 3 T13: 0.0247 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 0.8685 L22: 0.9773 REMARK 3 L33: 1.1124 L12: 0.0790 REMARK 3 L13: -0.2561 L23: -0.6148 REMARK 3 S TENSOR REMARK 3 S11: -0.0056 S12: -0.0108 S13: 0.1455 REMARK 3 S21: 0.0143 S22: 0.0074 S23: -0.1042 REMARK 3 S31: -0.0099 S32: 0.0368 S33: -0.0018 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2WFH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-APR-09. REMARK 100 THE DEPOSITION ID IS D_1290039374. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36353 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 45.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2V70 REMARK 200 REMARK 200 REMARK: THE INPUT MODEL WAS EDITED TO CONTAIN THE SAME NUMBER OF REMARK 200 LRR REPEATS AS THE TARGET. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LISO4, 0.1 M TRIS PH 8.5, 30% REMARK 280 PEG 4000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 64.33000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 64.33000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.07500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 64.33000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 12.03750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 64.33000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.11250 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 64.33000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.33000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 24.07500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 64.33000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 36.11250 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 64.33000 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 12.03750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 724 REMARK 465 SER A 725 REMARK 465 ARG A 726 REMARK 465 ALA A 908 REMARK 465 ALA A 909 REMARK 465 ALA A 910 REMARK 465 HIS A 911 REMARK 465 HIS A 912 REMARK 465 HIS A 913 REMARK 465 HIS A 914 REMARK 465 HIS A 915 REMARK 465 HIS A 916 REMARK 465 GLY B 724 REMARK 465 SER B 725 REMARK 465 ARG B 726 REMARK 465 ALA B 908 REMARK 465 ALA B 909 REMARK 465 ALA B 910 REMARK 465 HIS B 911 REMARK 465 HIS B 912 REMARK 465 HIS B 913 REMARK 465 HIS B 914 REMARK 465 HIS B 915 REMARK 465 HIS B 916 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 735 63.36 32.22 REMARK 500 THR A 736 -5.26 81.78 REMARK 500 ASN A 764 -161.02 -122.81 REMARK 500 ASN A 787 -165.24 -125.73 REMARK 500 ASN A 799 -6.18 77.07 REMARK 500 MET A 800 52.80 -97.59 REMARK 500 ASN A 811 -157.71 -124.26 REMARK 500 LEU A 824 59.12 -91.33 REMARK 500 ASN A 835 -156.50 -122.13 REMARK 500 ILE A 856 22.34 -141.10 REMARK 500 PRO A 881 32.57 -85.37 REMARK 500 ASN B 764 -163.81 -115.74 REMARK 500 ASN B 787 -162.53 -121.17 REMARK 500 MET B 800 54.98 -100.87 REMARK 500 ASN B 811 -157.37 -124.81 REMARK 500 ARG B 814 -63.56 -130.24 REMARK 500 ASN B 835 -159.68 -133.20 REMARK 500 LEU B 848 59.12 -93.82 REMARK 500 ILE B 856 26.26 -146.80 REMARK 500 ASP B 864 -169.92 -103.59 REMARK 500 PRO B 881 31.02 -87.75 REMARK 500 ALA B 893 119.94 -37.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2070 DISTANCE = 6.00 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1908 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2V9T RELATED DB: PDB REMARK 900 COMPLEX BETWEEN THE SECOND LRR DOMAIN OF SLIT2 AND THE FIRST IG REMARK 900 DOMAIN FROM ROBO1 REMARK 900 RELATED ID: 2V9S RELATED DB: PDB REMARK 900 SECOND LRR DOMAIN OF HUMAN SLIT2 REMARK 900 RELATED ID: 2V70 RELATED DB: PDB REMARK 900 THIRD LRR DOMAIN OF HUMAN SLIT2 REMARK 999 REMARK 999 SEQUENCE REMARK 999 CONSTRUCT CONTAINS N-TERMINAL RESIDUES GS AND C-TERMINAL REMARK 999 RESIDUES AAAHHHHHH DBREF 2WFH A 724 725 PDB 2WFH 2WFH 724 725 DBREF 2WFH A 726 907 UNP O94813 SLIT2_HUMAN 726 907 DBREF 2WFH A 908 916 PDB 2WFH 2WFH 908 916 DBREF 2WFH B 724 725 PDB 2WFH 2WFH 724 725 DBREF 2WFH B 726 907 UNP O94813 SLIT2_HUMAN 726 907 DBREF 2WFH B 908 916 PDB 2WFH 2WFH 908 916 SEQRES 1 A 193 GLY SER ARG CYS PRO THR GLU CYS THR CYS LEU ASP THR SEQRES 2 A 193 VAL VAL ARG CYS SER ASN LYS GLY LEU LYS VAL LEU PRO SEQRES 3 A 193 LYS GLY ILE PRO ARG ASP VAL THR GLU LEU TYR LEU ASP SEQRES 4 A 193 GLY ASN GLN PHE THR LEU VAL PRO LYS GLU LEU SER ASN SEQRES 5 A 193 TYR LYS HIS LEU THR LEU ILE ASP LEU SER ASN ASN ARG SEQRES 6 A 193 ILE SER THR LEU SER ASN GLN SER PHE SER ASN MET THR SEQRES 7 A 193 GLN LEU LEU THR LEU ILE LEU SER TYR ASN ARG LEU ARG SEQRES 8 A 193 CYS ILE PRO PRO ARG THR PHE ASP GLY LEU LYS SER LEU SEQRES 9 A 193 ARG LEU LEU SER LEU HIS GLY ASN ASP ILE SER VAL VAL SEQRES 10 A 193 PRO GLU GLY ALA PHE ASN ASP LEU SER ALA LEU SER HIS SEQRES 11 A 193 LEU ALA ILE GLY ALA ASN PRO LEU TYR CYS ASP CYS ASN SEQRES 12 A 193 MET GLN TRP LEU SER ASP TRP VAL LYS SER GLU TYR LYS SEQRES 13 A 193 GLU PRO GLY ILE ALA ARG CYS ALA GLY PRO GLY GLU MET SEQRES 14 A 193 ALA ASP LYS LEU LEU LEU THR THR PRO SER LYS LYS PHE SEQRES 15 A 193 THR CYS ALA ALA ALA HIS HIS HIS HIS HIS HIS SEQRES 1 B 193 GLY SER ARG CYS PRO THR GLU CYS THR CYS LEU ASP THR SEQRES 2 B 193 VAL VAL ARG CYS SER ASN LYS GLY LEU LYS VAL LEU PRO SEQRES 3 B 193 LYS GLY ILE PRO ARG ASP VAL THR GLU LEU TYR LEU ASP SEQRES 4 B 193 GLY ASN GLN PHE THR LEU VAL PRO LYS GLU LEU SER ASN SEQRES 5 B 193 TYR LYS HIS LEU THR LEU ILE ASP LEU SER ASN ASN ARG SEQRES 6 B 193 ILE SER THR LEU SER ASN GLN SER PHE SER ASN MET THR SEQRES 7 B 193 GLN LEU LEU THR LEU ILE LEU SER TYR ASN ARG LEU ARG SEQRES 8 B 193 CYS ILE PRO PRO ARG THR PHE ASP GLY LEU LYS SER LEU SEQRES 9 B 193 ARG LEU LEU SER LEU HIS GLY ASN ASP ILE SER VAL VAL SEQRES 10 B 193 PRO GLU GLY ALA PHE ASN ASP LEU SER ALA LEU SER HIS SEQRES 11 B 193 LEU ALA ILE GLY ALA ASN PRO LEU TYR CYS ASP CYS ASN SEQRES 12 B 193 MET GLN TRP LEU SER ASP TRP VAL LYS SER GLU TYR LYS SEQRES 13 B 193 GLU PRO GLY ILE ALA ARG CYS ALA GLY PRO GLY GLU MET SEQRES 14 B 193 ALA ASP LYS LEU LEU LEU THR THR PRO SER LYS LYS PHE SEQRES 15 B 193 THR CYS ALA ALA ALA HIS HIS HIS HIS HIS HIS HET SO4 A1908 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *329(H2 O) HELIX 1 1 PRO A 770 TYR A 776 5 7 HELIX 2 2 ASP A 864 ASN A 866 5 3 HELIX 3 3 MET A 867 GLU A 877 1 11 HELIX 4 4 PRO A 889 ALA A 893 5 5 HELIX 5 5 PRO A 901 PHE A 905 5 5 HELIX 6 6 PRO B 770 TYR B 776 5 7 HELIX 7 7 ASP B 864 ASN B 866 5 3 HELIX 8 8 MET B 867 LYS B 875 1 9 HELIX 9 9 PRO B 889 ALA B 893 5 5 HELIX 10 10 PRO B 901 PHE B 905 5 5 SHEET 1 AA 7 THR A 732 LEU A 734 0 SHEET 2 AA 7 VAL A 737 ARG A 739 -1 O VAL A 737 N LEU A 734 SHEET 3 AA 7 GLU A 758 TYR A 760 1 O GLU A 758 N VAL A 738 SHEET 4 AA 7 LEU A 781 ASP A 783 1 O LEU A 781 N LEU A 759 SHEET 5 AA 7 THR A 805 ILE A 807 1 O THR A 805 N ILE A 782 SHEET 6 AA 7 LEU A 829 SER A 831 1 O LEU A 829 N LEU A 806 SHEET 7 AA 7 HIS A 853 ALA A 855 1 O HIS A 853 N LEU A 830 SHEET 1 AB 2 LEU A 861 TYR A 862 0 SHEET 2 AB 2 CYS A 886 GLY A 888 1 N ALA A 887 O LEU A 861 SHEET 1 BA 7 THR B 732 LEU B 734 0 SHEET 2 BA 7 VAL B 737 ARG B 739 -1 O VAL B 737 N LEU B 734 SHEET 3 BA 7 GLU B 758 TYR B 760 1 O GLU B 758 N VAL B 738 SHEET 4 BA 7 LEU B 781 ASP B 783 1 O LEU B 781 N LEU B 759 SHEET 5 BA 7 THR B 805 ILE B 807 1 O THR B 805 N ILE B 782 SHEET 6 BA 7 LEU B 829 SER B 831 1 O LEU B 829 N LEU B 806 SHEET 7 BA 7 HIS B 853 ALA B 855 1 O HIS B 853 N LEU B 830 SHEET 1 BB 2 LEU B 861 TYR B 862 0 SHEET 2 BB 2 CYS B 886 GLY B 888 1 N ALA B 887 O LEU B 861 SSBOND 1 CYS A 727 CYS A 733 1555 1555 2.03 SSBOND 2 CYS A 731 CYS A 740 1555 1555 2.06 SSBOND 3 CYS A 863 CYS A 886 1555 1555 2.04 SSBOND 4 CYS A 865 CYS A 907 1555 1555 2.03 SSBOND 5 CYS B 727 CYS B 733 1555 1555 2.05 SSBOND 6 CYS B 731 CYS B 740 1555 1555 2.05 SSBOND 7 CYS B 863 CYS B 886 1555 1555 2.05 SSBOND 8 CYS B 865 CYS B 907 1555 1555 2.03 CISPEP 1 GLY A 888 PRO A 889 0 -2.04 CISPEP 2 GLY B 888 PRO B 889 0 -0.38 SITE 1 AC1 8 TYR A 810 HIS A 833 ALA A 858 HOH A2178 SITE 2 AC1 8 HOH A2179 HOH A2180 TYR B 810 HIS B 833 CRYST1 128.660 128.660 48.150 90.00 90.00 90.00 I 41 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007772 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007772 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020768 0.00000