HEADER SIGNALING PROTEIN 14-APR-09 2WFR TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL SIGNALLING DOMAIN OF HUMAN DHH TITLE 2 WITH CALCIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: DESERT HEDGEHOG PROTEIN N-PRODUCT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL SIGNALLING DOMAIN, RESIDUES 39-194; COMPND 5 SYNONYM: DESERT HEDGEHOG, HHG-3, DHH; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA-GAMI 2(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS LIPOPROTEIN, DEVELOPMENT, CELL MEMBRANE, AUTOCATALYTIC CLEAVAGE, KEYWDS 2 SIGNALING PROTEIN, DISEASE MUTATION, HEDGEHOG SIGNALLING, PROTEASE, KEYWDS 3 MEMBRANE, SECRETED, PALMITATE, HYDROLASE, SIGNAL TRANSDUCTION, KEYWDS 4 DEVELOPMENTAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.BISHOP,A.R.ARICESCU,K.HARLOS,C.A.O'CALLAGHAN,E.Y.JONES,C.SIEBOLD REVDAT 4 13-DEC-23 2WFR 1 REMARK LINK REVDAT 3 13-JUL-11 2WFR 1 VERSN REVDAT 2 21-JUL-09 2WFR 1 JRNL REVDAT 1 30-JUN-09 2WFR 0 JRNL AUTH B.BISHOP,A.R.ARICESCU,K.HARLOS,C.A.O'CALLAGHAN,E.Y.JONES, JRNL AUTH 2 C.SIEBOLD JRNL TITL STRUCTURAL INSIGHTS INTO HEDGEHOG LIGAND SEQUESTRATION BY JRNL TITL 2 THE HUMAN HEDGEHOG-INTERACTING PROTEIN HIP JRNL REF NAT.STRUCT.MOL.BIOL. V. 16 698 2009 JRNL REFN ISSN 1545-9993 JRNL PMID 19561611 JRNL DOI 10.1038/NSMB.1607 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0047 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 10143 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 491 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 718 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 30 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1325 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 96 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.86000 REMARK 3 B22 (A**2) : 1.92000 REMARK 3 B33 (A**2) : -1.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.204 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.168 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.125 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.405 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1366 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 928 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1853 ; 1.455 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2228 ; 0.899 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 164 ; 5.927 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 74 ;31.964 ;22.703 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 219 ;13.442 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;14.624 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 192 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1546 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 298 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 820 ; 0.752 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 334 ; 0.202 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1313 ; 1.295 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 546 ; 2.152 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 540 ; 3.364 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 39 A 203 REMARK 3 ORIGIN FOR THE GROUP (A): -10.7010 7.6560 -10.8080 REMARK 3 T TENSOR REMARK 3 T11: 0.0189 T22: 0.0732 REMARK 3 T33: 0.0106 T12: -0.0124 REMARK 3 T13: 0.0066 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 3.3738 L22: 3.0751 REMARK 3 L33: 3.3480 L12: -0.4626 REMARK 3 L13: -0.7534 L23: 0.8039 REMARK 3 S TENSOR REMARK 3 S11: 0.0460 S12: 0.1751 S13: 0.1250 REMARK 3 S21: -0.2182 S22: -0.0138 S23: -0.0246 REMARK 3 S31: -0.0793 S32: -0.0766 S33: -0.0322 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES RESIDUAL ONLY. RESIDUE Q39 WAS DISORDERED REMARK 3 AND MODELED AS AN ALANINE. REMARK 4 REMARK 4 2WFR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-APR-09. REMARK 100 THE DEPOSITION ID IS D_1290039463. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97623 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10765 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.74000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2WFQ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, PH 8.5 0.2 M LITHIUM REMARK 280 SULFATE 0.2 M SODIUM THIOCYANATE 30% (W/V) PEG4000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.06500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.89000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.94000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.89000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.06500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 20.94000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 39 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 59 -122.38 -111.69 REMARK 500 ASP A 132 -71.85 -93.36 REMARK 500 ASP A 138 25.46 48.57 REMARK 500 HIS A 202 -139.09 -115.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1205 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 90 OE2 REMARK 620 2 GLU A 90 OE1 50.2 REMARK 620 3 GLU A 91 OE2 80.6 110.6 REMARK 620 4 GLU A 91 OE1 82.1 75.3 49.1 REMARK 620 5 ASP A 96 OD1 155.9 146.8 76.3 87.8 REMARK 620 6 ASP A 96 OD2 146.4 97.8 107.0 79.4 50.4 REMARK 620 7 THR A 126 O 99.5 87.8 154.3 156.6 98.4 87.2 REMARK 620 8 GLU A 127 OE1 88.1 133.9 74.2 123.3 79.2 125.4 80.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1206 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 91 OE2 REMARK 620 2 GLU A 127 OE2 104.0 REMARK 620 3 ASP A 130 OD1 157.5 88.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 141 NE2 REMARK 620 2 ASP A 148 OD1 111.0 REMARK 620 3 HIS A 183 ND1 98.4 109.6 REMARK 620 4 HIS A 203 ND1 111.4 117.5 107.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1208 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WFQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL SIGNALLING DOMAIN OF HUMAN DHH REMARK 900 WITHOUT CALCIUM REMARK 900 RELATED ID: 2WG3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN HUMAN HEDGEHOG-INTERACTING REMARK 900 PROTEIN HIP AND DESERT HEDGEHOG WITHOUT CALCIUM REMARK 900 RELATED ID: 2WFX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN HUMAN HEDGEHOG-INTERACTING REMARK 900 PROTEIN HIP AND SONIC HEDGEHOG IN THE PRESENCE OF CALCIUM REMARK 900 RELATED ID: 2WG4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN HUMAN HEDGEHOG-INTERACTING REMARK 900 PROTEIN HIP AND SONIC HEDGEHOG WITHOUT CALCIUM REMARK 900 RELATED ID: 2WFT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN HIP ECTODOMAIN DBREF 2WFR A 39 194 UNP O43323 DHH_HUMAN 39 194 DBREF 2WFR A 195 203 PDB 2WFR 2WFR 195 203 SEQRES 1 A 165 GLN LEU VAL PRO LEU LEU TYR LYS GLN PHE VAL PRO GLY SEQRES 2 A 165 VAL PRO GLU ARG THR LEU GLY ALA SER GLY PRO ALA GLU SEQRES 3 A 165 GLY ARG VAL ALA ARG GLY SER GLU ARG PHE ARG ASP LEU SEQRES 4 A 165 VAL PRO ASN TYR ASN PRO ASP ILE ILE PHE LYS ASP GLU SEQRES 5 A 165 GLU ASN SER GLY ALA ASP ARG LEU MET THR GLU ARG CYS SEQRES 6 A 165 LYS GLU ARG VAL ASN ALA LEU ALA ILE ALA VAL MET ASN SEQRES 7 A 165 MET TRP PRO GLY VAL ARG LEU ARG VAL THR GLU GLY TRP SEQRES 8 A 165 ASP GLU ASP GLY HIS HIS ALA GLN ASP SER LEU HIS TYR SEQRES 9 A 165 GLU GLY ARG ALA LEU ASP ILE THR THR SER ASP ARG ASP SEQRES 10 A 165 ARG ASN LYS TYR GLY LEU LEU ALA ARG LEU ALA VAL GLU SEQRES 11 A 165 ALA GLY PHE ASP TRP VAL TYR TYR GLU SER ARG ASN HIS SEQRES 12 A 165 VAL HIS VAL SER VAL LYS ALA ASP ASN SER LEU ALA VAL SEQRES 13 A 165 LYS LEU GLU HIS HIS HIS HIS HIS HIS HET ZN A1204 1 HET CA A1205 1 HET CA A1206 1 HET SO4 A1207 5 HET SO4 A1208 5 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION FORMUL 2 ZN ZN 2+ FORMUL 3 CA 2(CA 2+) FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 HOH *96(H2 O) HELIX 1 1 ARG A 73 LEU A 77 5 5 HELIX 2 2 GLY A 94 ASP A 96 5 3 HELIX 3 3 THR A 100 TRP A 118 1 19 HELIX 4 4 SER A 139 GLY A 144 5 6 HELIX 5 5 ASP A 155 ASN A 157 5 3 HELIX 6 6 LYS A 158 ALA A 169 1 12 HELIX 7 7 SER A 191 LEU A 196 1 6 HELIX 8 8 GLU A 197 HIS A 201 5 5 SHEET 1 AA 6 PHE A 48 VAL A 49 0 SHEET 2 AA 6 TRP A 173 SER A 178 -1 O VAL A 174 N VAL A 49 SHEET 3 AA 6 HIS A 181 SER A 185 -1 O HIS A 181 N SER A 178 SHEET 4 AA 6 ALA A 146 THR A 151 -1 O LEU A 147 N VAL A 184 SHEET 5 AA 6 LEU A 123 GLU A 127 -1 O ARG A 124 N THR A 150 SHEET 6 AA 6 ILE A 85 PHE A 87 1 O ILE A 86 N VAL A 125 SHEET 1 AB 2 VAL A 78 PRO A 79 0 SHEET 2 AB 2 LEU A 98 MET A 99 -1 O MET A 99 N VAL A 78 LINK OE2 GLU A 90 CA CA A1205 1555 1555 2.67 LINK OE1 GLU A 90 CA CA A1205 1555 1555 2.54 LINK OE2 GLU A 91 CA CA A1205 1555 1555 2.58 LINK OE1 GLU A 91 CA CA A1205 1555 1555 2.66 LINK OE2 GLU A 91 CA CA A1206 1555 1555 2.56 LINK OD1 ASP A 96 CA CA A1205 1555 1555 2.80 LINK OD2 ASP A 96 CA CA A1205 1555 1555 2.40 LINK O THR A 126 CA CA A1205 1555 1555 2.54 LINK OE1 GLU A 127 CA CA A1205 1555 1555 2.67 LINK OE2 GLU A 127 CA CA A1206 1555 1555 2.57 LINK OD1 ASP A 130 CA CA A1206 1555 1555 2.82 LINK NE2 HIS A 141 ZN ZN A1204 1555 1555 2.03 LINK OD1 ASP A 148 ZN ZN A1204 1555 1555 1.99 LINK ND1 HIS A 183 ZN ZN A1204 1555 1555 2.27 LINK ND1 HIS A 203 ZN ZN A1204 4455 1555 2.03 CISPEP 1 VAL A 49 PRO A 50 0 -2.94 SITE 1 AC1 4 HIS A 141 ASP A 148 HIS A 183 HIS A 203 SITE 1 AC2 5 GLU A 90 GLU A 91 ASP A 96 THR A 126 SITE 2 AC2 5 GLU A 127 SITE 1 AC3 3 GLU A 91 GLU A 127 ASP A 130 SITE 1 AC4 5 LYS A 88 ARG A 124 GLN A 137 ARG A 154 SITE 2 AC4 5 HOH A2073 SITE 1 AC5 4 LEU A 44 TYR A 45 ARG A 179 HOH A2096 CRYST1 40.130 41.880 83.780 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024919 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023878 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011936 0.00000