HEADER VIRAL PROTEIN 27-APR-09 2WGT TITLE STRUCTURE OF HUMAN ADENOVIRUS SEROTYPE 37 FIBRE HEAD IN COMPLEX WITH A TITLE 2 SIALIC ACID DERIVATIVE, O-METHYL 5-N-PROPAONYL-3,5-DIDEOXY-D- TITLE 3 GLYCERO-A-D-GALACTO-2-NONULOPYRANOSYLONIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBER PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: FIBRE HEAD, RESIDUES 177-365; COMPND 5 SYNONYM: ADENOVIRUS 37 FIBRE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ADENOVIRUS 37; SOURCE 3 ORGANISM_TAXID: 52275; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21STAR(DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PPROEX HTB KEYWDS SIALIC ACID, VIRAL PROTEIN, CONJUNCTIVITIS, DAF, AD37, CD46, KEYWDS 2 RECEPTOR, NEURAMINIC ACID EXPDTA X-RAY DIFFRACTION AUTHOR S.JOHANSSON,E.NILSSON,W.QIAN,D.GUILLIGAY,T.CREPIN,S.CUSACK,N.ARNBERG, AUTHOR 2 M.ELOFSSON REVDAT 3 13-DEC-23 2WGT 1 HETSYN REVDAT 2 29-JUL-20 2WGT 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 24-NOV-09 2WGT 0 JRNL AUTH S.JOHANSSON,E.NILSSON,W.QIAN,D.GUILLIGAY,T.CREPIN,S.CUSACK, JRNL AUTH 2 N.ARNBERG,M.ELOFSSON JRNL TITL DESIGN, SYNTHESIS, AND EVALUATION OF N-ACYL MODIFIED SIALIC JRNL TITL 2 ACIDS AS INHIBITORS OF ADENOVIRUSES CAUSING EPIDEMIC JRNL TITL 3 KERATOCONJUNCTIVITIS. JRNL REF J.MED.CHEM. V. 52 3666 2009 JRNL REFN ISSN 0022-2623 JRNL PMID 19456100 JRNL DOI 10.1021/JM801609S REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 55584 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2953 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4067 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 207 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4361 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 715 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.64000 REMARK 3 B22 (A**2) : 0.64000 REMARK 3 B33 (A**2) : -1.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.58000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.129 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.774 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4530 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3003 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6164 ; 1.225 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7390 ; 0.864 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 548 ; 6.533 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 188 ;37.630 ;25.160 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 758 ;12.066 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ; 9.781 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 707 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4934 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 885 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 704 ; 0.171 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3008 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2156 ; 0.172 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2179 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 554 ; 0.135 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.161 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.237 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 25 ; 0.135 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.125 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.023 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2860 ; 0.655 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1105 ; 0.129 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4486 ; 1.094 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1986 ; 1.337 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1678 ; 1.922 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2WGT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-APR-09. REMARK 100 THE DEPOSITION ID IS D_1290039603. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58545 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.740 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.73 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1UXA REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25-27 % POLYETHYLENE GLYCOL 8000, 50 REMARK 280 MM ZINC ACETATE, AND 100 MM HEPES PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.99500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -110.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 172 REMARK 465 ALA A 173 REMARK 465 MET A 174 REMARK 465 GLY A 175 REMARK 465 SER A 176 REMARK 465 TRP A 177 REMARK 465 ASN A 178 REMARK 465 PRO A 179 REMARK 465 LYS A 180 REMARK 465 GLY B 172 REMARK 465 ALA B 173 REMARK 465 MET B 174 REMARK 465 GLY B 175 REMARK 465 SER B 176 REMARK 465 TRP B 177 REMARK 465 ASN B 178 REMARK 465 PRO B 179 REMARK 465 LYS B 180 REMARK 465 TYR B 181 REMARK 465 ASP B 182 REMARK 465 GLY C 172 REMARK 465 ALA C 173 REMARK 465 MET C 174 REMARK 465 GLY C 175 REMARK 465 SER C 176 REMARK 465 TRP C 177 REMARK 465 ASN C 178 REMARK 465 PRO C 179 REMARK 465 LYS C 180 REMARK 465 TYR C 181 REMARK 465 ASP C 182 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 2267 O HOH C 2268 2.14 REMARK 500 O HOH A 2143 O HOH A 2145 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 182 -87.90 50.23 REMARK 500 THR A 189 152.26 69.89 REMARK 500 CYS A 213 75.68 -119.62 REMARK 500 SER A 274 -154.15 -130.57 REMARK 500 ALA A 283 40.29 -151.93 REMARK 500 THR B 189 154.67 66.97 REMARK 500 ILE B 198 -63.57 -94.02 REMARK 500 CYS B 213 71.42 -111.08 REMARK 500 SER B 274 -164.40 -129.81 REMARK 500 ALA B 283 42.56 -144.27 REMARK 500 THR C 189 124.67 63.81 REMARK 500 PRO C 190 31.22 -83.42 REMARK 500 ILE C 198 -65.42 -94.38 REMARK 500 CYS C 213 67.39 -115.96 REMARK 500 SER C 274 -166.13 -128.41 REMARK 500 ALA C 283 43.03 -145.52 REMARK 500 SER C 297 -166.76 -161.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2088 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH B2089 DISTANCE = 6.65 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 ZINC ION (ZN): FROM CRYSTALLIZATION MEDIUM REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1367 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 231 NE2 REMARK 620 2 GLU A 351 OE2 129.5 REMARK 620 3 HOH A2217 O 102.8 81.9 REMARK 620 4 HOH A2218 O 94.9 85.1 162.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1367 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 231 NE2 REMARK 620 2 GLU B 351 OE2 107.1 REMARK 620 3 HOH B2220 O 104.8 93.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1366 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 231 NE2 REMARK 620 2 HOH C2267 O 102.5 REMARK 620 3 HOH C2268 O 116.5 62.5 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UXE RELATED DB: PDB REMARK 900 ADENOVIRUS AD37 FIBRE HEAD REMARK 900 RELATED ID: 1UXA RELATED DB: PDB REMARK 900 ADENOVIRUS AD37 FIBRE HEAD IN COMPLEX WITH SIALYL-LACTOSE REMARK 900 RELATED ID: 2J12 RELATED DB: PDB REMARK 900 AD37 FIBRE HEAD IN COMPLEX WITH CAR D1 REMARK 900 RELATED ID: 1UXB RELATED DB: PDB REMARK 900 ADENOVIRUS AD19P FIBRE HEAD IN COMPLEX WITH SIALYL-LACTOSE REMARK 900 RELATED ID: 2WGU RELATED DB: PDB REMARK 900 ADENOVIRUS SEROTYPE 37 FIBRE HEAD IN COMPLEX WITH SIALIC ACID REMARK 900 DERIVATIVE, O-METHYL 5-N- METHOXYCARBONYL -3,5-DIDEOXY-D-GLYCERO-A- REMARK 900 D-GALACTO-2- NONULOPYRANOSYLONIC ACID DBREF 2WGT A 172 176 PDB 2WGT 2WGT 172 176 DBREF 2WGT A 177 365 UNP Q64823 Q64823_9ADEN 177 365 DBREF 2WGT B 172 176 PDB 2WGT 2WGT 172 176 DBREF 2WGT B 177 365 UNP Q64823 Q64823_9ADEN 177 365 DBREF 2WGT C 172 176 PDB 2WGT 2WGT 172 176 DBREF 2WGT C 177 365 UNP Q64823 Q64823_9ADEN 177 365 SEQRES 1 A 194 GLY ALA MET GLY SER TRP ASN PRO LYS TYR ASP THR ARG SEQRES 2 A 194 THR LEU TRP THR THR PRO ASP THR SER PRO ASN CYS THR SEQRES 3 A 194 ILE ALA GLN ASP LYS ASP SER LYS LEU THR LEU VAL LEU SEQRES 4 A 194 THR LYS CYS GLY SER GLN ILE LEU ALA ASN VAL SER LEU SEQRES 5 A 194 ILE VAL VAL ALA GLY LYS TYR HIS ILE ILE ASN ASN LYS SEQRES 6 A 194 THR ASN PRO LYS ILE LYS SER PHE THR ILE LYS LEU LEU SEQRES 7 A 194 PHE ASN LYS ASN GLY VAL LEU LEU ASP ASN SER ASN LEU SEQRES 8 A 194 GLY LYS ALA TYR TRP ASN PHE ARG SER GLY ASN SER ASN SEQRES 9 A 194 VAL SER THR ALA TYR GLU LYS ALA ILE GLY PHE MET PRO SEQRES 10 A 194 ASN LEU VAL ALA TYR PRO LYS PRO SER ASN SER LYS LYS SEQRES 11 A 194 TYR ALA ARG ASP ILE VAL TYR GLY THR ILE TYR LEU GLY SEQRES 12 A 194 GLY LYS PRO ASP GLN PRO ALA VAL ILE LYS THR THR PHE SEQRES 13 A 194 ASN GLN GLU THR GLY CYS GLU TYR SER ILE THR PHE ASN SEQRES 14 A 194 PHE SER TRP SER LYS THR TYR GLU ASN VAL GLU PHE GLU SEQRES 15 A 194 THR THR SER PHE THR PHE SER TYR ILE ALA GLN GLU SEQRES 1 B 194 GLY ALA MET GLY SER TRP ASN PRO LYS TYR ASP THR ARG SEQRES 2 B 194 THR LEU TRP THR THR PRO ASP THR SER PRO ASN CYS THR SEQRES 3 B 194 ILE ALA GLN ASP LYS ASP SER LYS LEU THR LEU VAL LEU SEQRES 4 B 194 THR LYS CYS GLY SER GLN ILE LEU ALA ASN VAL SER LEU SEQRES 5 B 194 ILE VAL VAL ALA GLY LYS TYR HIS ILE ILE ASN ASN LYS SEQRES 6 B 194 THR ASN PRO LYS ILE LYS SER PHE THR ILE LYS LEU LEU SEQRES 7 B 194 PHE ASN LYS ASN GLY VAL LEU LEU ASP ASN SER ASN LEU SEQRES 8 B 194 GLY LYS ALA TYR TRP ASN PHE ARG SER GLY ASN SER ASN SEQRES 9 B 194 VAL SER THR ALA TYR GLU LYS ALA ILE GLY PHE MET PRO SEQRES 10 B 194 ASN LEU VAL ALA TYR PRO LYS PRO SER ASN SER LYS LYS SEQRES 11 B 194 TYR ALA ARG ASP ILE VAL TYR GLY THR ILE TYR LEU GLY SEQRES 12 B 194 GLY LYS PRO ASP GLN PRO ALA VAL ILE LYS THR THR PHE SEQRES 13 B 194 ASN GLN GLU THR GLY CYS GLU TYR SER ILE THR PHE ASN SEQRES 14 B 194 PHE SER TRP SER LYS THR TYR GLU ASN VAL GLU PHE GLU SEQRES 15 B 194 THR THR SER PHE THR PHE SER TYR ILE ALA GLN GLU SEQRES 1 C 194 GLY ALA MET GLY SER TRP ASN PRO LYS TYR ASP THR ARG SEQRES 2 C 194 THR LEU TRP THR THR PRO ASP THR SER PRO ASN CYS THR SEQRES 3 C 194 ILE ALA GLN ASP LYS ASP SER LYS LEU THR LEU VAL LEU SEQRES 4 C 194 THR LYS CYS GLY SER GLN ILE LEU ALA ASN VAL SER LEU SEQRES 5 C 194 ILE VAL VAL ALA GLY LYS TYR HIS ILE ILE ASN ASN LYS SEQRES 6 C 194 THR ASN PRO LYS ILE LYS SER PHE THR ILE LYS LEU LEU SEQRES 7 C 194 PHE ASN LYS ASN GLY VAL LEU LEU ASP ASN SER ASN LEU SEQRES 8 C 194 GLY LYS ALA TYR TRP ASN PHE ARG SER GLY ASN SER ASN SEQRES 9 C 194 VAL SER THR ALA TYR GLU LYS ALA ILE GLY PHE MET PRO SEQRES 10 C 194 ASN LEU VAL ALA TYR PRO LYS PRO SER ASN SER LYS LYS SEQRES 11 C 194 TYR ALA ARG ASP ILE VAL TYR GLY THR ILE TYR LEU GLY SEQRES 12 C 194 GLY LYS PRO ASP GLN PRO ALA VAL ILE LYS THR THR PHE SEQRES 13 C 194 ASN GLN GLU THR GLY CYS GLU TYR SER ILE THR PHE ASN SEQRES 14 C 194 PHE SER TRP SER LYS THR TYR GLU ASN VAL GLU PHE GLU SEQRES 15 C 194 THR THR SER PHE THR PHE SER TYR ILE ALA GLN GLU HET 18D A1366 22 HET ZN A1367 1 HET 18D B1366 22 HET ZN B1367 1 HET ZN C1366 1 HET 18D C1367 22 HETNAM 18D 3,5-DIDEOXY-5-(PROPANOYLAMINO)-D-GLYCERO-ALPHA-D- HETNAM 2 18D GALACTO-NON-2-ULOPYRANOSONIC ACID HETNAM ZN ZINC ION HETSYN 18D 3,5-DIDEOXY-5-(PROPANOYLAMINO)-D-GLYCERO-ALPHA-D- HETSYN 2 18D GALACTO-NON-2-ULOSONIC ACID; 3,5-DIDEOXY-5- HETSYN 3 18D (PROPANOYLAMINO)-D-GLYCERO-D-GALACTO-NON-2-ULOSONIC HETSYN 4 18D ACID; 3,5-DIDEOXY-5-(PROPANOYLAMINO)-D-GLYCERO- HETSYN 5 18D GALACTO-NON-2-ULOSONIC ACID FORMUL 4 18D 3(C12 H21 N O9) FORMUL 5 ZN 3(ZN 2+) FORMUL 10 HOH *715(H2 O) HELIX 1 1 ALA A 283 MET A 287 5 5 HELIX 2 2 TYR A 302 ARG A 304 5 3 HELIX 3 3 GLY A 314 LYS A 316 5 3 HELIX 4 4 ALA B 283 MET B 287 5 5 HELIX 5 5 TYR B 302 ARG B 304 5 3 HELIX 6 6 GLY B 314 LYS B 316 5 3 HELIX 7 7 GLY C 263 TRP C 267 5 5 HELIX 8 8 ALA C 283 MET C 287 5 5 HELIX 9 9 TYR C 302 ARG C 304 5 3 HELIX 10 10 GLY C 314 LYS C 316 5 3 SHEET 1 AA 6 SER A 274 ASN A 275 0 SHEET 2 AA 6 ASN A 268 SER A 271 -1 O SER A 271 N SER A 274 SHEET 3 AA 6 THR A 185 TRP A 187 -1 O THR A 185 N ARG A 270 SHEET 4 AA 6 SER A 204 CYS A 213 -1 O LEU A 210 N LEU A 186 SHEET 5 AA 6 GLN A 216 VAL A 225 -1 O GLN A 216 N CYS A 213 SHEET 6 AA 6 PHE A 357 ILE A 362 -1 O PHE A 357 N VAL A 221 SHEET 1 AB 2 ILE A 232 ASN A 234 0 SHEET 2 AB 2 GLU A 348 GLU A 351 -1 N ASN A 349 O ILE A 233 SHEET 1 AC 4 SER A 243 PHE A 250 0 SHEET 2 AC 4 TYR A 335 SER A 342 -1 O TYR A 335 N PHE A 250 SHEET 3 AC 4 PRO A 320 PHE A 327 -1 O VAL A 322 N SER A 342 SHEET 4 AC 4 ILE A 306 TYR A 312 -1 O VAL A 307 N THR A 325 SHEET 1 BA 6 SER B 274 ASN B 275 0 SHEET 2 BA 6 ASN B 268 SER B 271 -1 O SER B 271 N SER B 274 SHEET 3 BA 6 THR B 185 TRP B 187 -1 O THR B 185 N ARG B 270 SHEET 4 BA 6 SER B 204 CYS B 213 -1 O LEU B 210 N LEU B 186 SHEET 5 BA 6 GLN B 216 VAL B 225 -1 O GLN B 216 N CYS B 213 SHEET 6 BA 6 PHE B 357 ILE B 362 -1 O PHE B 357 N VAL B 221 SHEET 1 BB 2 ILE B 232 ASN B 234 0 SHEET 2 BB 2 GLU B 348 GLU B 351 -1 N ASN B 349 O ILE B 233 SHEET 1 BC 4 SER B 243 PHE B 250 0 SHEET 2 BC 4 TYR B 335 SER B 342 -1 O TYR B 335 N PHE B 250 SHEET 3 BC 4 PRO B 320 PHE B 327 -1 O VAL B 322 N SER B 342 SHEET 4 BC 4 ILE B 306 TYR B 312 -1 O VAL B 307 N THR B 325 SHEET 1 CA 6 SER C 274 ASN C 275 0 SHEET 2 CA 6 ASN C 268 SER C 271 -1 O SER C 271 N SER C 274 SHEET 3 CA 6 THR C 185 TRP C 187 -1 O THR C 185 N ARG C 270 SHEET 4 CA 6 SER C 204 CYS C 213 -1 O LEU C 210 N LEU C 186 SHEET 5 CA 6 GLN C 216 VAL C 225 -1 O GLN C 216 N CYS C 213 SHEET 6 CA 6 PHE C 357 ILE C 362 -1 O PHE C 357 N VAL C 221 SHEET 1 CB 2 ILE C 232 ASN C 234 0 SHEET 2 CB 2 GLU C 348 GLU C 351 -1 N ASN C 349 O ILE C 233 SHEET 1 CC 4 SER C 243 PHE C 250 0 SHEET 2 CC 4 TYR C 335 SER C 342 -1 O TYR C 335 N PHE C 250 SHEET 3 CC 4 PRO C 320 PHE C 327 -1 O VAL C 322 N SER C 342 SHEET 4 CC 4 ILE C 306 TYR C 312 -1 O VAL C 307 N THR C 325 LINK NE2 HIS A 231 ZN ZN A1367 1555 1555 1.97 LINK OE2 GLU A 351 ZN ZN A1367 1555 1555 1.83 LINK ZN ZN A1367 O HOH A2217 1555 1555 2.28 LINK ZN ZN A1367 O HOH A2218 1555 1555 2.30 LINK NE2 HIS B 231 ZN ZN B1367 1555 1555 2.09 LINK OE2 GLU B 351 ZN ZN B1367 1555 1555 1.85 LINK ZN ZN B1367 O HOH B2220 1555 1555 2.29 LINK NE2 HIS C 231 ZN ZN C1366 1555 1555 2.17 LINK ZN ZN C1366 O HOH C2267 1555 1555 1.84 LINK ZN ZN C1366 O HOH C2268 1555 1555 2.24 CRYST1 61.270 69.990 75.000 90.00 94.42 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016321 0.000000 0.001262 0.00000 SCALE2 0.000000 0.014288 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013373 0.00000