HEADER TRANSPORT PROTEIN 07-MAY-09 2WHY TITLE CRYSTAL STRUCTURE OF THE TRISCATECHOLATE SIDEROPHORE BINDING PROTEIN TITLE 2 FEUA FROM BACILLUS SUBTILIS COMPLEXED WITH FERRI-BACILLIBACTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: IRON-UPTAKE SYSTEM-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 21-317; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BACILLIBACTIN; COMPND 8 CHAIN: B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 ATCC: 21332; SOURCE 5 GENE: FEUA, BSU01630; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PCB-28A; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: POK01; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 13 ORGANISM_TAXID: 1423 KEYWDS TRANSPORT PROTEIN, BACILLIBACTIN AND ENTEROBACTIN BINDING, KEYWDS 2 TRISCATECHOLATE BINDING PROTEIN, IRON TRANSPORT, HIGH AFFINITY IRON KEYWDS 3 IMPORT, IRON, MEMBRANE, PALMITATE, TRANSPORT, ABC-TYPE TRANSPORTER KEYWDS 4 BINDING PROTEIN, SIDEROPHORE BINDING PROTEIN, LIPOPROTEIN, CELL KEYWDS 5 MEMBRANE, ION TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR F.PEUCKERT,M.MIETHKE,A.G.ALBRECHT,L.-O.ESSEN,M.A.MARAHIEL REVDAT 4 13-DEC-23 2WHY 1 COMPND SOURCE REMARK DBREF REVDAT 4 2 1 SEQADV SEQRES SHEET LINK REVDAT 4 3 1 SITE ATOM REVDAT 3 28-DEC-11 2WHY 1 JRNL DBREF REVDAT 2 13-JUL-11 2WHY 1 VERSN REVDAT 1 29-SEP-09 2WHY 0 JRNL AUTH F.PEUCKERT,M.MIETHKE,A.G.ALBRECHT,L.-O.ESSEN,M.A.MARAHIEL JRNL TITL STRUCTURAL BASIS AND STEREOCHEMISTRY OF TRISCATECHOLATE JRNL TITL 2 SIDEROPHORE BINDING BY FEUA. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 48 7924 2009 JRNL REFN ISSN 1433-7851 JRNL PMID 19746494 JRNL DOI 10.1002/ANIE.200902495 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 25537 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2472 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1863 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 213 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2200 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 146 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 24.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : -1.08000 REMARK 3 B33 (A**2) : 0.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.57000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.103 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.900 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2300 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1510 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3110 ; 1.159 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3745 ; 0.864 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 299 ; 5.096 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 81 ;37.670 ;26.420 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 400 ;13.482 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ; 9.408 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 365 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2522 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 398 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 528 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1646 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1168 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1158 ; 0.157 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 146 ; 0.121 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.141 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 29 ; 0.228 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.161 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1512 ; 0.550 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 594 ; 0.136 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2374 ; 0.850 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 888 ; 1.450 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 733 ; 2.275 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 142 REMARK 3 ORIGIN FOR THE GROUP (A): -0.5968 -6.6227 -24.6814 REMARK 3 T TENSOR REMARK 3 T11: 0.0234 T22: -0.0494 REMARK 3 T33: -0.1273 T12: -0.0630 REMARK 3 T13: -0.0052 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 1.3595 L22: 2.9162 REMARK 3 L33: 2.5314 L12: 0.4453 REMARK 3 L13: 0.1032 L23: -0.1624 REMARK 3 S TENSOR REMARK 3 S11: -0.1389 S12: 0.2451 S13: 0.0550 REMARK 3 S21: -0.6368 S22: 0.1399 S23: -0.0088 REMARK 3 S31: -0.0778 S32: 0.0040 S33: -0.0010 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 143 A 165 REMARK 3 ORIGIN FOR THE GROUP (A): 15.8551 -2.0074 -9.6226 REMARK 3 T TENSOR REMARK 3 T11: -0.1600 T22: -0.0513 REMARK 3 T33: 0.0588 T12: -0.0865 REMARK 3 T13: -0.0177 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 3.2009 L22: 7.0403 REMARK 3 L33: 22.2577 L12: -1.9204 REMARK 3 L13: 5.1349 L23: -9.7798 REMARK 3 S TENSOR REMARK 3 S11: -0.2657 S12: 0.1259 S13: 0.1517 REMARK 3 S21: 0.1789 S22: -0.1783 S23: -0.7507 REMARK 3 S31: -0.7938 S32: 0.8595 S33: 0.4440 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 166 A 297 REMARK 3 ORIGIN FOR THE GROUP (A): 0.8233 -17.3285 -0.5295 REMARK 3 T TENSOR REMARK 3 T11: -0.0880 T22: -0.0646 REMARK 3 T33: -0.0503 T12: 0.0239 REMARK 3 T13: 0.0118 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 0.5601 L22: 2.4838 REMARK 3 L33: 1.9445 L12: 0.2636 REMARK 3 L13: 0.2229 L23: -1.1651 REMARK 3 S TENSOR REMARK 3 S11: -0.0046 S12: -0.0328 S13: -0.0898 REMARK 3 S21: 0.1670 S22: 0.0349 S23: -0.0347 REMARK 3 S31: 0.0433 S32: 0.0207 S33: -0.0302 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2WHY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1290039729. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28022 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 19.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2PHZ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 30% REMARK 280 (V/V) PEG 600, 100 MM PHOSPHATE-CITRATE, PH 5.2; THEN SOAKED IN REMARK 280 MOTHER LIQUOR CONTAINING 30% (V/V) GLYCEROL FOR CRYO PROTECTION. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.57000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 LYS A 4 REMARK 465 ASN A 5 REMARK 465 GLU A 6 REMARK 465 SER A 7 REMARK 465 THR A 8 REMARK 465 ALA A 9 REMARK 465 SER A 10 REMARK 465 LYS A 11 REMARK 465 ALA A 12 REMARK 465 SER A 13 REMARK 465 GLY A 14 REMARK 465 THR A 15 REMARK 465 ALA A 16 REMARK 465 SER A 17 REMARK 465 GLU A 18 REMARK 465 ALA A 302 REMARK 465 ALA A 303 REMARK 465 LEU A 304 REMARK 465 GLU A 305 REMARK 465 HIS A 306 REMARK 465 HIS A 307 REMARK 465 HIS A 308 REMARK 465 HIS A 309 REMARK 465 HIS A 310 REMARK 465 HIS A 311 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 19 NZ REMARK 470 LYS A 20 CG CD CE NZ REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 ASP A 36 OD1 OD2 REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 GLU A 90 CG CD OE1 OE2 REMARK 470 LYS A 91 CG CD CE NZ REMARK 470 LYS A 96 CG CD CE NZ REMARK 470 LYS A 113 CG CD CE NZ REMARK 470 LYS A 145 CG CD CE NZ REMARK 470 LYS A 148 CD CE NZ REMARK 470 LYS A 149 CE NZ REMARK 470 GLN A 156 CG CD OE1 NE2 REMARK 470 GLU A 160 CG CD OE1 OE2 REMARK 470 ASP A 167 CG OD1 OD2 REMARK 470 GLN A 190 CG CD OE1 NE2 REMARK 470 LYS A 204 CE NZ REMARK 470 LYS A 222 CE NZ REMARK 470 ASP A 242 CG OD1 OD2 REMARK 470 LYS A 243 CE NZ REMARK 470 LYS A 248 CD CE NZ REMARK 470 LYS A 252 CG CD CE NZ REMARK 470 LYS A 289 CG CD CE NZ REMARK 470 GLN A 297 CG CD OE1 NE2 REMARK 470 ASN A 298 CG OD1 ND2 REMARK 470 LYS A 299 CG CD CE NZ REMARK 470 LEU A 300 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR B 13 C THR B 16 1.05 REMARK 500 OG1 THR B 16 C THR B 19 1.06 REMARK 500 C THR B 13 OG1 THR B 19 1.16 REMARK 500 OG1 THR B 13 O THR B 16 1.92 REMARK 500 OG1 THR B 16 O THR B 19 2.02 REMARK 500 O THR B 13 OG1 THR B 19 2.12 REMARK 500 CB THR B 16 C THR B 19 2.13 REMARK 500 OG1 THR B 16 CA THR B 19 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 192 -143.01 60.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2052 DISTANCE = 6.04 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 20 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DBH B 11 O6 REMARK 620 2 DBH B 11 O3 79.4 REMARK 620 3 DBH B 14 O6 86.7 162.4 REMARK 620 4 DBH B 14 O3 107.7 92.7 81.2 REMARK 620 5 DBH B 17 O6 85.1 102.4 86.9 161.9 REMARK 620 6 DBH B 17 O3 160.8 92.2 104.2 89.8 79.8 REMARK 620 N 1 2 3 4 5 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 20 DBREF 2WHY A 2 298 UNP P40409 FEUA_BACSU 21 317 DBREF 2WHY B 11 20 PDB 2WHY 2WHY 11 20 SEQADV 2WHY MET A 1 UNP P40409 INITIATING METHIONINE SEQADV 2WHY THR A 161 UNP P40409 ILE 180 CONFLICT SEQADV 2WHY ILE A 218 UNP P40409 SER 237 CONFLICT SEQADV 2WHY LYS A 299 UNP P40409 EXPRESSION TAG SEQADV 2WHY LEU A 300 UNP P40409 EXPRESSION TAG SEQADV 2WHY ALA A 301 UNP P40409 EXPRESSION TAG SEQADV 2WHY ALA A 302 UNP P40409 EXPRESSION TAG SEQADV 2WHY ALA A 303 UNP P40409 EXPRESSION TAG SEQADV 2WHY LEU A 304 UNP P40409 EXPRESSION TAG SEQADV 2WHY GLU A 305 UNP P40409 EXPRESSION TAG SEQADV 2WHY HIS A 306 UNP P40409 EXPRESSION TAG SEQADV 2WHY HIS A 307 UNP P40409 EXPRESSION TAG SEQADV 2WHY HIS A 308 UNP P40409 EXPRESSION TAG SEQADV 2WHY HIS A 309 UNP P40409 EXPRESSION TAG SEQADV 2WHY HIS A 310 UNP P40409 EXPRESSION TAG SEQADV 2WHY HIS A 311 UNP P40409 EXPRESSION TAG SEQRES 1 A 311 MET GLY SER LYS ASN GLU SER THR ALA SER LYS ALA SER SEQRES 2 A 311 GLY THR ALA SER GLU LYS LYS LYS ILE GLU TYR LEU ASP SEQRES 3 A 311 LYS THR TYR GLU VAL THR VAL PRO THR ASP LYS ILE ALA SEQRES 4 A 311 ILE THR GLY SER VAL GLU SER MET GLU ASP ALA LYS LEU SEQRES 5 A 311 LEU ASP VAL HIS PRO GLN GLY ALA ILE SER PHE SER GLY SEQRES 6 A 311 LYS PHE PRO ASP MET PHE LYS ASP ILE THR ASP LYS ALA SEQRES 7 A 311 GLU PRO THR GLY GLU LYS MET GLU PRO ASN ILE GLU LYS SEQRES 8 A 311 ILE LEU GLU MET LYS PRO ASP VAL ILE LEU ALA SER THR SEQRES 9 A 311 LYS PHE PRO GLU LYS THR LEU GLN LYS ILE SER THR ALA SEQRES 10 A 311 GLY THR THR ILE PRO VAL SER HIS ILE SER SER ASN TRP SEQRES 11 A 311 LYS GLU ASN MET MET LEU LEU ALA GLN LEU THR GLY LYS SEQRES 12 A 311 GLU LYS LYS ALA LYS LYS ILE ILE ALA ASP TYR GLU GLN SEQRES 13 A 311 ASP LEU LYS GLU THR LYS THR LYS ILE ASN ASP LYS ALA SEQRES 14 A 311 LYS ASP SER LYS ALA LEU VAL ILE ARG ILE ARG GLN GLY SEQRES 15 A 311 ASN ILE TYR ILE TYR PRO GLU GLN VAL TYR PHE ASN SER SEQRES 16 A 311 THR LEU TYR GLY ASP LEU GLY LEU LYS ALA PRO ASN GLU SEQRES 17 A 311 VAL LYS ALA ALA LYS ALA GLN GLU LEU ILE SER LEU GLU SEQRES 18 A 311 LYS LEU SER GLU MET ASN PRO ASP HIS ILE PHE VAL GLN SEQRES 19 A 311 PHE SER ASP ASP GLU ASN ALA ASP LYS PRO ASP ALA LEU SEQRES 20 A 311 LYS ASP LEU GLU LYS ASN PRO ILE TRP LYS SER LEU LYS SEQRES 21 A 311 ALA VAL LYS GLU ASP HIS VAL TYR VAL ASN SER VAL ASP SEQRES 22 A 311 PRO LEU ALA GLN GLY GLY THR ALA TRP SER LYS VAL ARG SEQRES 23 A 311 PHE LEU LYS ALA ALA ALA GLU LYS LEU THR GLN ASN LYS SEQRES 24 A 311 LEU ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 10 DBH GLY THR DBH GLY THR DBH GLY THR FE HET DBH B 11 10 HET DBH B 14 10 HET DBH B 17 10 HET FE B 20 1 HET CL A1302 1 HET CL A1303 1 HET CL A1304 1 HET CL A1305 1 HET CL A1306 1 HET CL A1307 1 HET CL A1308 1 HET CL A1309 1 HET CL A1310 1 HET CL A1311 1 HET CL A1312 1 HETNAM DBH 2,3-DIHYDROXY-BENZOIC ACID HETNAM FE FE (III) ION HETNAM CL CHLORIDE ION FORMUL 2 DBH 3(C7 H6 O4) FORMUL 2 FE FE 3+ FORMUL 3 CL 11(CL 1-) FORMUL 14 HOH *146(H2 O) HELIX 1 1 SER A 43 ASP A 54 1 12 HELIX 2 2 PRO A 68 LYS A 72 5 5 HELIX 3 3 ASN A 88 LYS A 96 1 9 HELIX 4 4 PRO A 107 SER A 115 1 9 HELIX 5 6 ASN A 129 GLY A 142 1 14 HELIX 6 7 LYS A 143 ILE A 165 1 23 HELIX 7 8 ASN A 166 ASP A 171 1 6 HELIX 8 9 PHE A 193 TYR A 198 1 6 HELIX 9 10 PRO A 206 ALA A 211 1 6 HELIX 10 11 SER A 219 ASN A 227 1 9 HELIX 11 12 ASP A 237 ALA A 241 5 5 HELIX 12 13 ASP A 245 ASN A 253 1 9 HELIX 13 14 ILE A 255 SER A 258 5 4 HELIX 14 15 LEU A 259 ASP A 265 1 7 HELIX 15 16 THR A 280 GLN A 297 1 18 SHEET 1 AA 2 LYS A 20 TYR A 24 0 SHEET 2 AA 2 LYS A 27 VAL A 31 -1 O LYS A 27 N TYR A 24 SHEET 1 AB 3 ILE A 38 ILE A 40 0 SHEET 2 AB 3 VAL A 99 SER A 103 1 O VAL A 99 N ALA A 39 SHEET 3 AB 3 THR A 120 VAL A 123 1 O ILE A 121 N ALA A 102 SHEET 1 AC 2 GLY A 59 SER A 62 0 SHEET 2 AC 2 GLU A 79 GLU A 83 1 O GLU A 79 N ALA A 60 SHEET 1 AD 4 ASN A 183 ILE A 186 0 SHEET 2 AD 4 ALA A 174 ARG A 180 -1 O ARG A 178 N TYR A 185 SHEET 3 AD 4 HIS A 230 PHE A 235 1 O HIS A 230 N LEU A 175 SHEET 4 AD 4 VAL A 267 VAL A 269 1 O TYR A 268 N VAL A 233 LINK C21 DBH B 11 N GLY B 12 1555 1555 1.03 LINK C21 DBH B 14 N GLY B 15 1555 1555 0.86 LINK C21 DBH B 17 N GLY B 18 1555 1555 0.89 LINK O6 DBH B 11 FE FE B 20 1555 1555 2.07 LINK O3 DBH B 11 FE FE B 20 1555 1555 2.06 LINK O6 DBH B 14 FE FE B 20 1555 1555 2.09 LINK O3 DBH B 14 FE FE B 20 1555 1555 1.93 LINK O6 DBH B 17 FE FE B 20 1555 1555 2.04 LINK O3 DBH B 17 FE FE B 20 1555 1555 2.08 CISPEP 1 VAL A 33 PRO A 34 0 0.79 SITE 1 AC1 2 LYS A 173 GLU A 208 SITE 1 AC2 1 THR A 120 SITE 1 AC3 2 ASP A 237 HOH A2104 SITE 1 AC4 4 TRP A 130 ASP A 200 HOH A2082 HOH A2132 SITE 1 AC5 3 ASP A 153 ASP A 157 HOH A2067 SITE 1 AC6 3 SER A 219 LEU A 220 GLU A 221 SITE 1 AC7 1 HOH A2124 SITE 1 AC8 3 DBH B 11 DBH B 14 DBH B 17 CRYST1 39.530 63.140 55.530 90.00 110.44 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025297 0.000000 0.009428 0.00000 SCALE2 0.000000 0.015838 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019218 0.00000