HEADER HYDROLASE 11-MAY-09 2WIE TITLE HIGH-RESOLUTION STRUCTURE OF THE ROTOR RING FROM A PROTON DEPENDENT TITLE 2 ATP SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP SYNTHASE C CHAIN; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 SYNONYM: C15_RING; COMPND 5 EC: 3.6.3.14 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTHROSPIRA PLATENSIS; SOURCE 3 ORGANISM_TAXID: 118562 KEYWDS HYDROLASE, F1FO ATP SYNTHASE ROTOR, ION PROTON-TRANSLOCATION, ION KEYWDS 2 TRANSPORT, TRANSMEMBRANE, C-RING STRUCTURE, SPIRULINA PLATENSIS, KEYWDS 3 HYDROGEN ION TRANSPORT, MEMBRANE PROTEIN COMPLEX, CF(0), MEMBRANE, KEYWDS 4 LIPID-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR D.POGORYELOV,O.YILDIZ,J.D.FARALDO-GOMEZ,T.MEIER REVDAT 5 20-NOV-24 2WIE 1 REMARK REVDAT 4 13-DEC-23 2WIE 1 REMARK LINK REVDAT 3 11-MAY-11 2WIE 1 JRNL REMARK FORMUL REVDAT 2 06-OCT-09 2WIE 1 JRNL REVDAT 1 29-SEP-09 2WIE 0 JRNL AUTH D.POGORYELOV,O.YILDIZ,J.D.FARALDO-GOMEZ,T.MEIER JRNL TITL HIGH-RESOLUTION STRUCTURE OF THE ROTOR RING OF A JRNL TITL 2 PROTON-DEPENDENT ATP SYNTHASE. JRNL REF NAT.STRUCT.MOL.BIOL. V. 16 1068 2009 JRNL REFN ISSN 1545-9993 JRNL PMID 19783985 JRNL DOI 10.1038/NSMB.1678 REMARK 2 REMARK 2 RESOLUTION. 2.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 37792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1892 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.9415 - 5.1313 0.98 2809 151 0.2715 0.3134 REMARK 3 2 5.1313 - 4.0736 0.99 2655 139 0.1797 0.2126 REMARK 3 3 4.0736 - 3.5589 1.00 2636 138 0.1557 0.2047 REMARK 3 4 3.5589 - 3.2336 1.00 2580 136 0.1607 0.1648 REMARK 3 5 3.2336 - 3.0019 1.00 2574 136 0.1597 0.2016 REMARK 3 6 3.0019 - 2.8249 1.00 2570 135 0.1655 0.1752 REMARK 3 7 2.8249 - 2.6835 1.00 2553 134 0.1647 0.2113 REMARK 3 8 2.6835 - 2.5667 1.00 2548 135 0.1662 0.2297 REMARK 3 9 2.5667 - 2.4679 1.00 2530 133 0.1724 0.2211 REMARK 3 10 2.4679 - 2.3827 1.00 2543 134 0.2001 0.2604 REMARK 3 11 2.3827 - 2.3082 1.00 2532 133 0.2165 0.2518 REMARK 3 12 2.3082 - 2.2422 1.00 2504 132 0.2356 0.3087 REMARK 3 13 2.2422 - 2.1832 0.99 2517 132 0.2617 0.2900 REMARK 3 14 2.1832 - 2.1300 0.94 2349 124 0.2991 0.3500 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 103.4 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.000 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.48500 REMARK 3 B22 (A**2) : 1.48500 REMARK 3 B33 (A**2) : -13.97540 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3307 REMARK 3 ANGLE : 0.944 4421 REMARK 3 CHIRALITY : 0.053 557 REMARK 3 PLANARITY : 0.005 510 REMARK 3 DIHEDRAL : 20.724 1299 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -63.1050 9.9154 32.0774 REMARK 3 T TENSOR REMARK 3 T11: 0.2254 T22: 0.1822 REMARK 3 T33: 0.2296 T12: -0.0410 REMARK 3 T13: -0.0206 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 0.5013 L22: 0.5320 REMARK 3 L33: 0.4996 L12: -0.1117 REMARK 3 L13: 0.0039 L23: 0.1306 REMARK 3 S TENSOR REMARK 3 S11: 0.1041 S12: 0.0217 S13: -0.1023 REMARK 3 S21: -0.0265 S22: 0.0177 S23: 0.0628 REMARK 3 S31: 0.2141 S32: -0.0838 S33: -0.0772 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -54.7244 4.7585 31.7332 REMARK 3 T TENSOR REMARK 3 T11: 0.2791 T22: 0.1124 REMARK 3 T33: 0.1866 T12: -0.0441 REMARK 3 T13: -0.0077 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 0.5869 L22: 0.1028 REMARK 3 L33: 0.9367 L12: -0.0754 REMARK 3 L13: -0.2215 L23: 0.0361 REMARK 3 S TENSOR REMARK 3 S11: 0.0481 S12: -0.0515 S13: -0.1102 REMARK 3 S21: -0.0291 S22: -0.0543 S23: 0.0893 REMARK 3 S31: 0.2989 S32: -0.1596 S33: 0.0165 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -44.9975 3.3844 31.7024 REMARK 3 T TENSOR REMARK 3 T11: 0.3321 T22: 0.1414 REMARK 3 T33: 0.2060 T12: 0.0059 REMARK 3 T13: 0.0160 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 0.5065 L22: 0.2426 REMARK 3 L33: 0.4617 L12: -0.0431 REMARK 3 L13: 0.1312 L23: -0.4728 REMARK 3 S TENSOR REMARK 3 S11: 0.0453 S12: -0.0172 S13: -0.1046 REMARK 3 S21: -0.0293 S22: 0.0208 S23: 0.0719 REMARK 3 S31: 0.4881 S32: 0.1125 S33: -0.0301 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): -35.5604 6.1485 31.7579 REMARK 3 T TENSOR REMARK 3 T11: 0.2624 T22: 0.1345 REMARK 3 T33: 0.1995 T12: 0.0431 REMARK 3 T13: 0.0270 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 0.4637 L22: 0.5635 REMARK 3 L33: 0.0891 L12: 0.2237 REMARK 3 L13: -0.0238 L23: 0.0487 REMARK 3 S TENSOR REMARK 3 S11: 0.0403 S12: -0.0390 S13: -0.1119 REMARK 3 S21: -0.0330 S22: 0.0935 S23: -0.0456 REMARK 3 S31: 0.1956 S32: 0.0385 S33: -0.0788 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN E REMARK 3 ORIGIN FOR THE GROUP (A): -28.0585 12.4489 31.7342 REMARK 3 T TENSOR REMARK 3 T11: 0.1773 T22: 0.1950 REMARK 3 T33: 0.2184 T12: 0.0395 REMARK 3 T13: 0.0416 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.6978 L22: 0.9390 REMARK 3 L33: 0.2008 L12: 0.1576 REMARK 3 L13: 0.0317 L23: -0.4002 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: -0.0504 S13: -0.0912 REMARK 3 S21: -0.0452 S22: 0.0360 S23: -0.0832 REMARK 3 S31: 0.2519 S32: 0.0814 S33: -0.0137 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2WIE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1290039777. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9202 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37848 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.130 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.740 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 20.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.99000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1YCE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 128.70000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 128.70000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 128.70000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 128.70000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 128.70000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 128.70000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTADECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTADECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 63580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -595.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -46.68000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 80.85213 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -93.36000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH D2001 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL B 82 C VAL B 82 OXT 1.594 REMARK 500 VAL C 82 C VAL C 82 OXT 1.194 REMARK 500 VAL D 82 C VAL D 82 OXT 1.645 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 78 42.23 -143.21 REMARK 500 ALA B 78 42.94 -146.85 REMARK 500 GLU C 2 124.90 -177.30 REMARK 500 ALA C 78 46.37 -145.51 REMARK 500 ALA D 78 45.93 -144.44 REMARK 500 ALA E 78 41.65 -142.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 CVM A 103 REMARK 610 CVM A 104 REMARK 610 CVM A 106 REMARK 610 CVM A 107 REMARK 610 CVM A 108 REMARK 610 CVM A 109 REMARK 610 CVM A 110 REMARK 610 CVM B 103 REMARK 610 CVM B 104 REMARK 610 CVM B 106 REMARK 610 CVM B 107 REMARK 610 CVM B 108 REMARK 610 CVM B 109 REMARK 610 CVM B 110 REMARK 610 CVM C 103 REMARK 610 CVM C 104 REMARK 610 CVM C 106 REMARK 610 CVM C 107 REMARK 610 CVM C 108 REMARK 610 CVM C 109 REMARK 610 CVM C 110 REMARK 610 CVM D 103 REMARK 610 CVM D 104 REMARK 610 CVM D 106 REMARK 610 CVM D 107 REMARK 610 CVM D 108 REMARK 610 CVM D 109 REMARK 610 CVM D 110 REMARK 610 CVM E 103 REMARK 610 CVM E 104 REMARK 610 CVM E 106 REMARK 610 CVM E 107 REMARK 610 CVM E 108 REMARK 610 CVM E 109 REMARK 610 CVM E 110 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM A 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM A 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM A 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM B 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM B 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM C 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM B 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM B 110 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM C 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM C 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM C 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM C 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM D 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM D 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM D 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM D 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM D 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM E 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM D 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM E 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM E 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM E 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM E 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM E 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM A 110 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM C 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM D 110 DBREF 2WIE A 1 82 UNP A5HEI4 A5HEI4_SPIPL 1 82 DBREF 2WIE B 1 82 UNP A5HEI4 A5HEI4_SPIPL 1 82 DBREF 2WIE C 1 82 UNP A5HEI4 A5HEI4_SPIPL 1 82 DBREF 2WIE D 1 82 UNP A5HEI4 A5HEI4_SPIPL 1 82 DBREF 2WIE E 1 82 UNP A5HEI4 A5HEI4_SPIPL 1 82 SEQRES 1 A 82 FME GLU SER ASN LEU THR THR ALA ALA SER VAL ILE ALA SEQRES 2 A 82 ALA ALA LEU ALA VAL GLY ILE GLY SER ILE GLY PRO GLY SEQRES 3 A 82 LEU GLY GLN GLY GLN ALA ALA GLY GLN ALA VAL GLU GLY SEQRES 4 A 82 ILE ALA ARG GLN PRO GLU ALA GLU GLY LYS ILE ARG GLY SEQRES 5 A 82 THR LEU LEU LEU SER LEU ALA PHE MET GLU ALA LEU THR SEQRES 6 A 82 ILE TYR GLY LEU VAL VAL ALA LEU VAL LEU LEU PHE ALA SEQRES 7 A 82 ASN PRO PHE VAL SEQRES 1 B 82 FME GLU SER ASN LEU THR THR ALA ALA SER VAL ILE ALA SEQRES 2 B 82 ALA ALA LEU ALA VAL GLY ILE GLY SER ILE GLY PRO GLY SEQRES 3 B 82 LEU GLY GLN GLY GLN ALA ALA GLY GLN ALA VAL GLU GLY SEQRES 4 B 82 ILE ALA ARG GLN PRO GLU ALA GLU GLY LYS ILE ARG GLY SEQRES 5 B 82 THR LEU LEU LEU SER LEU ALA PHE MET GLU ALA LEU THR SEQRES 6 B 82 ILE TYR GLY LEU VAL VAL ALA LEU VAL LEU LEU PHE ALA SEQRES 7 B 82 ASN PRO PHE VAL SEQRES 1 C 82 FME GLU SER ASN LEU THR THR ALA ALA SER VAL ILE ALA SEQRES 2 C 82 ALA ALA LEU ALA VAL GLY ILE GLY SER ILE GLY PRO GLY SEQRES 3 C 82 LEU GLY GLN GLY GLN ALA ALA GLY GLN ALA VAL GLU GLY SEQRES 4 C 82 ILE ALA ARG GLN PRO GLU ALA GLU GLY LYS ILE ARG GLY SEQRES 5 C 82 THR LEU LEU LEU SER LEU ALA PHE MET GLU ALA LEU THR SEQRES 6 C 82 ILE TYR GLY LEU VAL VAL ALA LEU VAL LEU LEU PHE ALA SEQRES 7 C 82 ASN PRO PHE VAL SEQRES 1 D 82 FME GLU SER ASN LEU THR THR ALA ALA SER VAL ILE ALA SEQRES 2 D 82 ALA ALA LEU ALA VAL GLY ILE GLY SER ILE GLY PRO GLY SEQRES 3 D 82 LEU GLY GLN GLY GLN ALA ALA GLY GLN ALA VAL GLU GLY SEQRES 4 D 82 ILE ALA ARG GLN PRO GLU ALA GLU GLY LYS ILE ARG GLY SEQRES 5 D 82 THR LEU LEU LEU SER LEU ALA PHE MET GLU ALA LEU THR SEQRES 6 D 82 ILE TYR GLY LEU VAL VAL ALA LEU VAL LEU LEU PHE ALA SEQRES 7 D 82 ASN PRO PHE VAL SEQRES 1 E 82 FME GLU SER ASN LEU THR THR ALA ALA SER VAL ILE ALA SEQRES 2 E 82 ALA ALA LEU ALA VAL GLY ILE GLY SER ILE GLY PRO GLY SEQRES 3 E 82 LEU GLY GLN GLY GLN ALA ALA GLY GLN ALA VAL GLU GLY SEQRES 4 E 82 ILE ALA ARG GLN PRO GLU ALA GLU GLY LYS ILE ARG GLY SEQRES 5 E 82 THR LEU LEU LEU SER LEU ALA PHE MET GLU ALA LEU THR SEQRES 6 E 82 ILE TYR GLY LEU VAL VAL ALA LEU VAL LEU LEU PHE ALA SEQRES 7 E 82 ASN PRO PHE VAL MODRES 2WIE FME A 1 MET N-FORMYLMETHIONINE MODRES 2WIE FME B 1 MET N-FORMYLMETHIONINE MODRES 2WIE FME C 1 MET N-FORMYLMETHIONINE MODRES 2WIE FME D 1 MET N-FORMYLMETHIONINE MODRES 2WIE FME E 1 MET N-FORMYLMETHIONINE HET FME A 1 10 HET FME B 1 10 HET FME C 1 10 HET FME D 1 10 HET FME E 1 10 HET CVM A 102 33 HET CVM A 103 6 HET CVM A 104 6 HET CVM A 106 6 HET CVM A 107 6 HET CVM A 108 6 HET CVM A 109 6 HET CVM A 110 6 HET CVM B 102 33 HET CVM B 103 6 HET CVM B 104 6 HET CVM B 106 6 HET CVM B 107 6 HET CVM B 108 6 HET CVM B 109 6 HET CVM B 110 6 HET CVM C 102 33 HET CVM C 103 6 HET CVM C 104 6 HET CVM C 106 6 HET CVM C 107 6 HET CVM C 108 6 HET CVM C 109 6 HET CVM C 110 6 HET CVM D 102 33 HET CVM D 103 6 HET CVM D 104 6 HET CVM D 106 6 HET CVM D 107 6 HET CVM D 108 6 HET CVM D 109 6 HET CVM D 110 6 HET CVM E 102 33 HET CVM E 103 6 HET CVM E 104 6 HET CVM E 106 6 HET CVM E 107 6 HET CVM E 108 6 HET CVM E 109 6 HET CVM E 110 6 HETNAM FME N-FORMYLMETHIONINE HETNAM CVM CYMAL-4 HETSYN CVM 4-CYCLOHEXYLBUTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D- HETSYN 2 CVM GLUCOPYRANOSIDE FORMUL 1 FME 5(C6 H11 N O3 S) FORMUL 6 CVM 40(C22 H40 O11) FORMUL 46 HOH *126(H2 O) HELIX 1 1 ASN A 4 VAL A 18 1 15 HELIX 2 2 GLN A 43 GLU A 47 5 5 HELIX 3 3 THR A 53 TYR A 67 1 15 HELIX 4 4 LEU A 69 ALA A 78 1 10 HELIX 5 5 ASN B 4 VAL B 18 1 15 HELIX 6 6 GLN B 43 GLU B 47 5 5 HELIX 7 7 THR B 53 TYR B 67 1 15 HELIX 8 8 LEU B 69 ALA B 78 1 10 HELIX 9 9 ASN C 4 VAL C 18 1 15 HELIX 10 10 GLN C 43 GLU C 47 5 5 HELIX 11 11 THR C 53 TYR C 67 1 15 HELIX 12 12 LEU C 69 ALA C 78 1 10 HELIX 13 13 ASN D 4 VAL D 18 1 15 HELIX 14 14 GLN D 43 GLU D 47 5 5 HELIX 15 15 THR D 53 TYR D 67 1 15 HELIX 16 16 LEU D 69 ALA D 78 1 10 HELIX 17 17 ASN E 4 VAL E 18 1 15 HELIX 18 18 GLN E 43 GLU E 47 5 5 HELIX 19 19 THR E 53 TYR E 67 1 15 HELIX 20 20 LEU E 69 ALA E 78 1 10 LINK C FME A 1 N GLU A 2 1555 1555 1.33 LINK C FME B 1 N GLU B 2 1555 1555 1.33 LINK C FME C 1 N GLU C 2 1555 1555 1.33 LINK C FME D 1 N GLU D 2 1555 1555 1.33 LINK C FME E 1 N GLU E 2 1555 1555 1.33 SITE 1 AC1 7 SER A 3 ASN A 4 LEU A 5 HOH A2028 SITE 2 AC1 7 LEU B 5 CVM B 102 CVM E 102 SITE 1 AC2 2 ALA A 63 CVM A 104 SITE 1 AC3 2 ALA A 63 CVM A 103 SITE 1 AC4 1 ILE A 66 SITE 1 AC5 1 VAL A 70 SITE 1 AC6 1 VAL A 74 SITE 1 AC7 5 CVM A 102 FME B 1 ALA B 9 LEU C 5 SITE 2 AC7 5 CVM C 102 SITE 1 AC8 7 FME B 1 SER B 3 CVM B 102 ASN C 4 SITE 2 AC8 7 LEU C 5 LEU D 5 CVM D 102 SITE 1 AC9 1 TYR B 67 SITE 1 BC1 3 GLU A 62 ALA B 59 ALA B 63 SITE 1 BC2 1 ILE B 66 SITE 1 BC3 2 ALA B 59 GLU B 62 SITE 1 BC4 2 LEU B 73 CVM B 107 SITE 1 BC5 1 ALA C 63 SITE 1 BC6 3 CVM B 109 CVM B 110 TYR C 67 SITE 1 BC7 2 CVM B 107 CVM C 104 SITE 1 BC8 1 ILE C 66 SITE 1 BC9 3 LEU C 69 LEU C 73 CVM C 107 SITE 1 CC1 1 LEU C 73 SITE 1 CC2 2 ILE C 66 CVM C 108 SITE 1 CC3 8 CVM C 102 ASN D 4 LEU D 5 ALA D 8 SITE 2 CC3 8 ALA D 9 HOH D2025 LEU E 5 CVM E 102 SITE 1 CC4 2 GLU C 62 ALA D 63 SITE 1 CC5 1 ILE D 66 SITE 1 CC6 2 VAL D 70 CVM E 103 SITE 1 CC7 1 LEU D 73 SITE 1 CC8 6 LEU A 5 CVM A 102 HOH A2028 CVM D 102 SITE 2 CC8 6 ASN E 4 LEU E 5 SITE 1 CC9 2 ALA E 63 CVM E 103 SITE 1 DC1 2 ILE E 66 TYR E 67 SITE 1 DC2 1 ALA E 59 SITE 1 DC3 1 CVM E 107 SITE 1 DC4 4 CVM D 107 CVM D 108 CVM D 110 TYR E 67 SITE 1 DC5 1 CVM E 108 SITE 1 DC6 1 LEU A 69 SITE 1 DC7 1 CVM B 110 SITE 1 DC8 2 LEU D 69 CVM E 103 CRYST1 93.360 93.360 257.400 90.00 90.00 120.00 P 63 2 2 60 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010711 0.006184 0.000000 0.00000 SCALE2 0.000000 0.012368 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003885 0.00000 HETATM 1 N FME A 1 -62.269 -0.106 1.812 1.00 91.58 N ANISOU 1 N FME A 1 12648 11396 10753 249 -995 -1295 N HETATM 2 CN FME A 1 -63.293 0.007 2.724 1.00 94.30 C ANISOU 2 CN FME A 1 12940 11725 11164 176 -1027 -1244 C HETATM 3 O1 FME A 1 -64.451 0.036 2.334 1.00 95.94 O ANISOU 3 O1 FME A 1 13135 11959 11358 144 -1088 -1240 O HETATM 4 CA FME A 1 -61.178 0.770 2.210 1.00 86.89 C ANISOU 4 CA FME A 1 12030 10822 10162 289 -892 -1255 C HETATM 5 CB FME A 1 -59.839 0.202 1.755 1.00 89.27 C ANISOU 5 CB FME A 1 12382 11102 10433 352 -859 -1319 C HETATM 6 CG FME A 1 -59.111 -0.534 2.873 1.00 89.58 C ANISOU 6 CG FME A 1 12419 11064 10553 337 -852 -1332 C HETATM 7 SD FME A 1 -60.099 -1.874 3.446 1.00216.81 S ANISOU 7 SD FME A 1 28550 27097 26732 264 -962 -1360 S HETATM 8 CE FME A 1 -59.149 -2.861 4.554 1.00194.24 C ANISOU 8 CE FME A 1 25706 24144 23951 261 -958 -1384 C HETATM 9 C FME A 1 -61.379 2.076 1.515 1.00 81.31 C ANISOU 9 C FME A 1 11304 10200 9391 321 -844 -1208 C HETATM 10 O FME A 1 -61.368 2.150 0.287 1.00 83.42 O ANISOU 10 O FME A 1 11611 10511 9572 366 -853 -1240 O