HEADER CELL ADHESION 13-MAY-09 2WIM TITLE CRYSTAL STRUCTURE OF NCAM2 IG1-3 CAVEAT 2WIM NAG A 950 HAS WRONG CHIRALITY AT ATOM C1 NAG B 953 HAS WRONG CAVEAT 2 2WIM CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURAL CELL ADHESION MOLECULE 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: IGI-III, RESIDUES 19-301; COMPND 5 SYNONYM: N-CAM 2, NCAM2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS CELL MEMBRANE, CELL ADHESION, TRANSMEMBRANE, IMMUNOGLOBULIN DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR N.KULAHIN,O.KRISTENSEN,K.RASMUSSEN,J.KASTRUP,V.BEREZIN,E.BOCK, AUTHOR 2 P.WALMOD,M.GAJHEDE REVDAT 5 09-OCT-24 2WIM 1 HETSYN REVDAT 4 29-JUL-20 2WIM 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 25-JUL-18 2WIM 1 CAVEAT COMPND JRNL REMARK REVDAT 3 2 1 HET HETNAM FORMUL LINK REVDAT 3 3 1 ATOM REVDAT 2 23-FEB-11 2WIM 1 JRNL REMARK REVDAT 1 25-AUG-10 2WIM 0 JRNL AUTH N.KULAHIN,O.KRISTENSEN,K.K.RASMUSSEN,L.OLSEN,P.RYDBERG, JRNL AUTH 2 B.VESTERGAARD,J.S.KASTRUP,V.BEREZIN,E.BOCK,P.S.WALMOD, JRNL AUTH 3 M.GAJHEDE JRNL TITL STRUCTURAL MODEL AND TRANS-INTERACTION OF THE ENTIRE JRNL TITL 2 ECTODOMAIN OF THE OLFACTORY CELL ADHESION MOLECULE. JRNL REF STRUCTURE V. 19 203 2011 JRNL REFN ISSN 1878-4186 JRNL PMID 21300289 JRNL DOI 10.1016/J.STR.2010.12.014 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.050 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 3 NUMBER OF REFLECTIONS : 14986 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 752 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.5751 - 5.1177 0.92 3015 160 0.2277 0.2940 REMARK 3 2 5.1177 - 4.0681 0.96 2994 155 0.1724 0.2146 REMARK 3 3 4.0681 - 3.5556 0.94 2849 157 0.2168 0.3481 REMARK 3 4 3.5556 - 3.2313 0.91 2773 149 0.2335 0.3281 REMARK 3 5 3.2313 - 3.0001 0.85 2603 131 0.2492 0.3564 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 88.56 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 2.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 76.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 96.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -17.61690 REMARK 3 B22 (A**2) : 38.40260 REMARK 3 B33 (A**2) : -20.78570 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4323 REMARK 3 ANGLE : 0.978 5841 REMARK 3 CHIRALITY : 0.059 664 REMARK 3 PLANARITY : 0.005 764 REMARK 3 DIHEDRAL : 18.492 1611 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2WIM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1290039740. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9755 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15703 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 24.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14 % PEG-3350, 20 MM CACL2, 0.1 M REMARK 280 CITRIC ACID PH 4.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.19500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.37000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.39000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 94.37000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.19500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.39000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 17 REMARK 465 MET A 18 REMARK 465 ASN A 152 REMARK 465 GLU A 153 REMARK 465 GLU A 154 REMARK 465 VAL A 155 REMARK 465 PHE A 299 REMARK 465 VAL A 300 REMARK 465 GLN A 301 REMARK 465 HIS A 302 REMARK 465 HIS A 303 REMARK 465 HIS A 304 REMARK 465 HIS A 305 REMARK 465 HIS A 306 REMARK 465 HIS A 307 REMARK 465 SER B 17 REMARK 465 MET B 18 REMARK 465 ASN B 152 REMARK 465 GLU B 153 REMARK 465 GLU B 154 REMARK 465 VAL B 155 REMARK 465 ALA B 220 REMARK 465 THR B 221 REMARK 465 ALA B 222 REMARK 465 GLU B 223 REMARK 465 ARG B 224 REMARK 465 ARG B 269 REMARK 465 ASN B 270 REMARK 465 ILE B 271 REMARK 465 ILE B 272 REMARK 465 PHE B 295 REMARK 465 LEU B 296 REMARK 465 GLN B 297 REMARK 465 VAL B 298 REMARK 465 PHE B 299 REMARK 465 VAL B 300 REMARK 465 GLN B 301 REMARK 465 HIS B 302 REMARK 465 HIS B 303 REMARK 465 HIS B 304 REMARK 465 HIS B 305 REMARK 465 HIS B 306 REMARK 465 HIS B 307 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 177 C2 NAG A 950 1.85 REMARK 500 ND2 ASN A 177 C3 NAG A 950 2.18 REMARK 500 O ARG B 193 N GLU B 195 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 142 C - N - CA ANGL. DEV. = -11.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 44 79.86 -116.42 REMARK 500 ILE A 45 105.31 -59.67 REMARK 500 PRO A 56 -5.65 -59.77 REMARK 500 GLN A 65 -7.78 -58.49 REMARK 500 ASN A 82 77.86 41.49 REMARK 500 SER A 122 -135.66 -108.46 REMARK 500 PRO A 123 69.24 -1.51 REMARK 500 GLN A 128 -59.60 -0.02 REMARK 500 GLU A 130 178.31 -52.50 REMARK 500 SER A 141 -82.20 -59.84 REMARK 500 ALA A 143 122.12 -36.86 REMARK 500 SER A 159 67.15 175.22 REMARK 500 ASN A 161 16.09 50.90 REMARK 500 ASN A 169 -21.07 92.16 REMARK 500 ILE A 176 80.35 -49.38 REMARK 500 ASP A 197 138.50 -174.81 REMARK 500 PRO A 208 157.33 -47.24 REMARK 500 ASN A 219 120.29 -170.86 REMARK 500 ALA A 222 -110.22 -49.56 REMARK 500 GLU A 226 179.02 -54.94 REMARK 500 ASN A 247 -35.00 66.99 REMARK 500 GLU A 253 -82.98 -63.59 REMARK 500 ASN A 254 -179.50 68.32 REMARK 500 LYS A 260 -73.28 -113.01 REMARK 500 ASN A 263 31.84 71.27 REMARK 500 ILE A 272 -156.57 -103.24 REMARK 500 LEU B 21 107.38 54.89 REMARK 500 LYS B 29 99.66 -163.36 REMARK 500 LYS B 38 148.38 172.12 REMARK 500 GLU B 47 67.41 -116.54 REMARK 500 THR B 64 -125.80 -83.49 REMARK 500 ASN B 82 84.29 44.61 REMARK 500 LYS B 99 -30.81 81.46 REMARK 500 GLU B 119 76.06 41.23 REMARK 500 ALA B 143 129.83 -35.62 REMARK 500 SER B 159 21.19 -174.26 REMARK 500 ASP B 160 -141.65 -70.24 REMARK 500 ASN B 170 141.66 -35.31 REMARK 500 LEU B 174 -119.79 -79.40 REMARK 500 GLU B 181 129.59 -37.04 REMARK 500 ALA B 192 -101.36 -52.70 REMARK 500 PRO B 214 -73.42 -53.32 REMARK 500 GLU B 226 -161.42 -103.72 REMARK 500 GLU B 227 -66.74 -145.39 REMARK 500 MET B 228 122.43 71.56 REMARK 500 ASN B 254 157.62 65.60 REMARK 500 ASN B 285 -159.11 -136.61 REMARK 500 ALA B 287 -155.52 -83.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 122 PRO A 123 -149.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2V5T RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NCAM2 IG2-3 REMARK 900 RELATED ID: 2XY2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NCAM2 IG1-2 REMARK 900 RELATED ID: 2VAJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NCAM2 IG1 (I4122 CELL UNIT) REMARK 900 RELATED ID: 2JLL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NCAM2 IGIV-FN3II REMARK 900 RELATED ID: 2DOC RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE FIBRONECTIN TYPE-III DOMAIN OFHUMAN REMARK 900 NEURAL CELL ADHESION MOLECULE 2 REMARK 900 RELATED ID: 2XYC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NCAM2 IGIV-FN3I REMARK 900 RELATED ID: 2XY1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NCAM2 IG3-4 DBREF 2WIM A 19 301 UNP O15394 NCAM2_HUMAN 19 301 DBREF 2WIM B 19 301 UNP O15394 NCAM2_HUMAN 19 301 SEQADV 2WIM SER A 17 UNP O15394 EXPRESSION TAG SEQADV 2WIM MET A 18 UNP O15394 EXPRESSION TAG SEQADV 2WIM HIS A 302 UNP O15394 EXPRESSION TAG SEQADV 2WIM HIS A 303 UNP O15394 EXPRESSION TAG SEQADV 2WIM HIS A 304 UNP O15394 EXPRESSION TAG SEQADV 2WIM HIS A 305 UNP O15394 EXPRESSION TAG SEQADV 2WIM HIS A 306 UNP O15394 EXPRESSION TAG SEQADV 2WIM HIS A 307 UNP O15394 EXPRESSION TAG SEQADV 2WIM SER B 17 UNP O15394 EXPRESSION TAG SEQADV 2WIM MET B 18 UNP O15394 EXPRESSION TAG SEQADV 2WIM HIS B 302 UNP O15394 EXPRESSION TAG SEQADV 2WIM HIS B 303 UNP O15394 EXPRESSION TAG SEQADV 2WIM HIS B 304 UNP O15394 EXPRESSION TAG SEQADV 2WIM HIS B 305 UNP O15394 EXPRESSION TAG SEQADV 2WIM HIS B 306 UNP O15394 EXPRESSION TAG SEQADV 2WIM HIS B 307 UNP O15394 EXPRESSION TAG SEQRES 1 A 291 SER MET ALA LEU LEU GLN VAL THR ILE SER LEU SER LYS SEQRES 2 A 291 VAL GLU LEU SER VAL GLY GLU SER LYS PHE PHE THR CYS SEQRES 3 A 291 THR ALA ILE GLY GLU PRO GLU SER ILE ASP TRP TYR ASN SEQRES 4 A 291 PRO GLN GLY GLU LYS ILE ILE SER THR GLN ARG VAL VAL SEQRES 5 A 291 VAL GLN LYS GLU GLY VAL ARG SER ARG LEU THR ILE TYR SEQRES 6 A 291 ASN ALA ASN ILE GLU ASP ALA GLY ILE TYR ARG CYS GLN SEQRES 7 A 291 ALA THR ASP ALA LYS GLY GLN THR GLN GLU ALA THR VAL SEQRES 8 A 291 VAL LEU GLU ILE TYR GLN LYS LEU THR PHE ARG GLU VAL SEQRES 9 A 291 VAL SER PRO GLN GLU PHE LYS GLN GLY GLU ASP ALA GLU SEQRES 10 A 291 VAL VAL CYS ARG VAL SER SER SER PRO ALA PRO ALA VAL SEQRES 11 A 291 SER TRP LEU TYR HIS ASN GLU GLU VAL THR THR ILE SER SEQRES 12 A 291 ASP ASN ARG PHE ALA MET LEU ALA ASN ASN ASN LEU GLN SEQRES 13 A 291 ILE LEU ASN ILE ASN LYS SER ASP GLU GLY ILE TYR ARG SEQRES 14 A 291 CYS GLU GLY ARG VAL GLU ALA ARG GLY GLU ILE ASP PHE SEQRES 15 A 291 ARG ASP ILE ILE VAL ILE VAL ASN VAL PRO PRO ALA ILE SEQRES 16 A 291 SER MET PRO GLN LYS SER PHE ASN ALA THR ALA GLU ARG SEQRES 17 A 291 GLY GLU GLU MET THR PHE SER CYS ARG ALA SER GLY SER SEQRES 18 A 291 PRO GLU PRO ALA ILE SER TRP PHE ARG ASN GLY LYS LEU SEQRES 19 A 291 ILE GLU GLU ASN GLU LYS TYR ILE LEU LYS GLY SER ASN SEQRES 20 A 291 THR GLU LEU THR VAL ARG ASN ILE ILE ASN SER ASP GLY SEQRES 21 A 291 GLY PRO TYR VAL CYS ARG ALA THR ASN LYS ALA GLY GLU SEQRES 22 A 291 ASP GLU LYS GLN ALA PHE LEU GLN VAL PHE VAL GLN HIS SEQRES 23 A 291 HIS HIS HIS HIS HIS SEQRES 1 B 291 SER MET ALA LEU LEU GLN VAL THR ILE SER LEU SER LYS SEQRES 2 B 291 VAL GLU LEU SER VAL GLY GLU SER LYS PHE PHE THR CYS SEQRES 3 B 291 THR ALA ILE GLY GLU PRO GLU SER ILE ASP TRP TYR ASN SEQRES 4 B 291 PRO GLN GLY GLU LYS ILE ILE SER THR GLN ARG VAL VAL SEQRES 5 B 291 VAL GLN LYS GLU GLY VAL ARG SER ARG LEU THR ILE TYR SEQRES 6 B 291 ASN ALA ASN ILE GLU ASP ALA GLY ILE TYR ARG CYS GLN SEQRES 7 B 291 ALA THR ASP ALA LYS GLY GLN THR GLN GLU ALA THR VAL SEQRES 8 B 291 VAL LEU GLU ILE TYR GLN LYS LEU THR PHE ARG GLU VAL SEQRES 9 B 291 VAL SER PRO GLN GLU PHE LYS GLN GLY GLU ASP ALA GLU SEQRES 10 B 291 VAL VAL CYS ARG VAL SER SER SER PRO ALA PRO ALA VAL SEQRES 11 B 291 SER TRP LEU TYR HIS ASN GLU GLU VAL THR THR ILE SER SEQRES 12 B 291 ASP ASN ARG PHE ALA MET LEU ALA ASN ASN ASN LEU GLN SEQRES 13 B 291 ILE LEU ASN ILE ASN LYS SER ASP GLU GLY ILE TYR ARG SEQRES 14 B 291 CYS GLU GLY ARG VAL GLU ALA ARG GLY GLU ILE ASP PHE SEQRES 15 B 291 ARG ASP ILE ILE VAL ILE VAL ASN VAL PRO PRO ALA ILE SEQRES 16 B 291 SER MET PRO GLN LYS SER PHE ASN ALA THR ALA GLU ARG SEQRES 17 B 291 GLY GLU GLU MET THR PHE SER CYS ARG ALA SER GLY SER SEQRES 18 B 291 PRO GLU PRO ALA ILE SER TRP PHE ARG ASN GLY LYS LEU SEQRES 19 B 291 ILE GLU GLU ASN GLU LYS TYR ILE LEU LYS GLY SER ASN SEQRES 20 B 291 THR GLU LEU THR VAL ARG ASN ILE ILE ASN SER ASP GLY SEQRES 21 B 291 GLY PRO TYR VAL CYS ARG ALA THR ASN LYS ALA GLY GLU SEQRES 22 B 291 ASP GLU LYS GLN ALA PHE LEU GLN VAL PHE VAL GLN HIS SEQRES 23 B 291 HIS HIS HIS HIS HIS MODRES 2WIM ASN A 177 ASN GLYCOSYLATION SITE MODRES 2WIM ASN A 219 ASN GLYCOSYLATION SITE MODRES 2WIM ASN B 219 ASN GLYCOSYLATION SITE HET NAG A 950 14 HET NAG A 951 14 HET CA A1299 1 HET NAG B 953 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 5 CA CA 2+ FORMUL 7 HOH *31(H2 O) HELIX 1 1 ASN A 84 ALA A 88 5 5 HELIX 2 2 ASN A 177 GLU A 181 5 5 HELIX 3 3 ASN B 84 ALA B 88 5 5 SHEET 1 AA 4 GLN A 22 ILE A 25 0 SHEET 2 AA 4 LYS A 38 ILE A 45 -1 O THR A 43 N THR A 24 SHEET 3 AA 4 ARG A 75 ILE A 80 -1 O SER A 76 N CYS A 42 SHEET 4 AA 4 VAL A 67 GLU A 72 -1 O VAL A 68 N THR A 79 SHEET 1 AB 4 LYS A 29 SER A 33 0 SHEET 2 AB 4 THR A 102 TYR A 112 1 O VAL A 108 N VAL A 30 SHEET 3 AB 4 GLY A 89 THR A 96 -1 O GLY A 89 N LEU A 109 SHEET 4 AB 4 SER A 50 ASP A 52 -1 O SER A 50 N THR A 96 SHEET 1 AC 4 GLN A 124 LYS A 127 0 SHEET 2 AC 4 ILE A 196 ASN A 206 1 O ILE A 202 N GLN A 124 SHEET 3 AC 4 GLY A 182 ARG A 189 -1 O GLY A 182 N VAL A 203 SHEET 4 AC 4 ALA A 145 LEU A 149 -1 O ALA A 145 N ARG A 189 SHEET 1 AD 3 ALA A 132 VAL A 134 0 SHEET 2 AD 3 LEU A 171 ILE A 173 -1 O LEU A 171 N VAL A 134 SHEET 3 AD 3 PHE A 163 MET A 165 -1 O ALA A 164 N GLN A 172 SHEET 1 AE 5 SER A 217 ASN A 219 0 SHEET 2 AE 5 GLY A 288 GLN A 297 1 O PHE A 295 N PHE A 218 SHEET 3 AE 5 GLY A 277 ASN A 285 -1 O GLY A 277 N LEU A 296 SHEET 4 AE 5 ALA A 241 ARG A 246 -1 O ALA A 241 N THR A 284 SHEET 5 AE 5 LYS A 249 LEU A 250 -1 O LYS A 249 N ARG A 246 SHEET 1 AF 3 GLU A 227 SER A 231 0 SHEET 2 AF 3 GLU A 265 ARG A 269 -1 O LEU A 266 N PHE A 230 SHEET 3 AF 3 TYR A 257 LEU A 259 -1 O ILE A 258 N THR A 267 SHEET 1 BA 4 GLN B 22 ILE B 25 0 SHEET 2 BA 4 LYS B 38 ILE B 45 -1 N THR B 43 O THR B 24 SHEET 3 BA 4 ARG B 75 ILE B 80 -1 O SER B 76 N CYS B 42 SHEET 4 BA 4 VAL B 67 GLU B 72 -1 O VAL B 68 N THR B 79 SHEET 1 BB 4 LYS B 29 SER B 33 0 SHEET 2 BB 4 THR B 102 TYR B 112 1 O VAL B 108 N VAL B 30 SHEET 3 BB 4 GLY B 89 THR B 96 -1 O GLY B 89 N LEU B 109 SHEET 4 BB 4 SER B 50 TYR B 54 -1 O SER B 50 N THR B 96 SHEET 1 BC 2 THR B 116 PHE B 117 0 SHEET 2 BC 2 VAL B 138 SER B 139 -1 O SER B 139 N THR B 116 SHEET 1 BD 4 GLN B 124 LYS B 127 0 SHEET 2 BD 4 GLU B 195 SER B 212 1 O ILE B 202 N GLN B 124 SHEET 3 BD 4 GLY B 182 VAL B 190 -1 O GLY B 182 N VAL B 203 SHEET 4 BD 4 ALA B 145 LEU B 149 -1 O ALA B 145 N ARG B 189 SHEET 1 BE 3 GLN B 124 LYS B 127 0 SHEET 2 BE 3 GLU B 195 SER B 212 1 O ILE B 202 N GLN B 124 SHEET 3 BE 3 ARG B 233 SER B 237 -1 O ARG B 233 N SER B 212 SHEET 1 BF 3 ASP B 131 VAL B 134 0 SHEET 2 BF 3 LEU B 171 ASN B 175 -1 O LEU B 171 N VAL B 134 SHEET 3 BF 3 PHE B 163 MET B 165 -1 O ALA B 164 N GLN B 172 SHEET 1 BG 2 THR B 229 SER B 231 0 SHEET 2 BG 2 GLU B 265 THR B 267 -1 N LEU B 266 O PHE B 230 SHEET 1 BH 3 LYS B 249 LEU B 250 0 SHEET 2 BH 3 TRP B 244 ARG B 246 -1 O ARG B 246 N LYS B 249 SHEET 3 BH 3 VAL B 280 CYS B 281 -1 O VAL B 280 N PHE B 245 SSBOND 1 CYS A 42 CYS A 93 1555 1555 2.03 SSBOND 2 CYS A 136 CYS A 186 1555 1555 2.05 SSBOND 3 CYS A 232 CYS A 281 1555 1555 2.03 SSBOND 4 CYS B 42 CYS B 93 1555 1555 2.03 SSBOND 5 CYS B 136 CYS B 186 1555 1555 2.04 SSBOND 6 CYS B 232 CYS B 281 1555 1555 2.04 LINK ND2 ASN A 177 C1 NAG A 950 1555 1555 1.44 LINK ND2 ASN A 219 C1 NAG A 951 1555 1555 1.45 LINK ND2 ASN B 219 C1 NAG B 953 1555 1555 1.45 CISPEP 1 SER A 237 PRO A 238 0 5.64 CISPEP 2 SER B 122 PRO B 123 0 2.38 CISPEP 3 SER B 141 PRO B 142 0 5.06 CISPEP 4 SER B 237 PRO B 238 0 -0.05 CRYST1 38.390 106.780 188.740 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026048 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009365 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005298 0.00000 MTRIX1 1 -0.996200 -0.060580 0.061810 16.10000 1 MTRIX2 1 -0.014050 -0.591500 -0.806200 42.70000 1 MTRIX3 1 0.085390 -0.804000 0.588400 20.44000 1