HEADER HYDROLASE 15-MAY-09 2WIR OBSLTE 17-AUG-11 2WIR 3ZWQ TITLE HYPERTHERMOPHILIC ESTERASE FROM THE ARCHEON PYROBACULUM TITLE 2 CALIDIFONTIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA/BETA HYDROLASE FOLD-3 DOMAIN PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PESTA; COMPND 5 EC: 3.1.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROBACULUM CALIDIFONTIS; SOURCE 3 ORGANISM_TAXID: 410359; SOURCE 4 STRAIN: VA1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET21A KEYWDS HYDROLASE, TERTIARY ALCOHOL, ALPHA/BETA HYDROLASE FOLD EXPDTA X-RAY DIFFRACTION AUTHOR G.J.PALM,X.BOGDANOVIC,W.HINRICHS REVDAT 4 17-AUG-11 2WIR 1 OBSLTE REVDAT 3 10-AUG-11 2WIR 1 JRNL REVDAT 2 13-JUL-11 2WIR 1 VERSN REVDAT 1 09-JUN-10 2WIR 0 JRNL AUTH G.J.PALM,E.FERNANDEZ-ALVARO,X.BOGDANOVIC,S.BARTSCH, JRNL AUTH 2 J.SCZODROK,R.K.SINGH,D.BOETTCHER,H.ATOMI,U.T.BORNSCHEUER, JRNL AUTH 3 W.HINRICHS JRNL TITL THE CRYSTAL STRUCTURE OF AN ESTERASE FOM THE JRNL TITL 2 HYPERTHERMOPHILIC MICROORGANISM PYROBACULUM CALIDIFONTIS JRNL TITL 3 VA1 SUPPORTS EXPLANATION OF ITS ENANTIOSELECTIVITY. JRNL REF APPL.MICROBIOL.BIOTECHNOL. V. 91 1061 2011 JRNL REFN ISSN 0175-7598 JRNL PMID 21614503 JRNL DOI 10.1007/S00253-011-3337-9 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 127.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 91.03 REMARK 3 NUMBER OF REFLECTIONS : 43950 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.20293 REMARK 3 R VALUE (WORKING SET) : 0.20092 REMARK 3 FREE R VALUE : 0.24016 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 2351 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.000 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.052 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2013 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 57.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.295 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.349 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4746 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 211 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 33.0 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.092 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.55 REMARK 3 B22 (A**2) : -1.21 REMARK 3 B33 (A**2) : 2.76 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.192 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.128 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.277 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4870 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3308 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6628 ; 1.779 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8013 ; 1.019 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 612 ; 6.332 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 214 ;29.877 ;22.757 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 759 ;15.281 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;16.980 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 740 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5465 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1018 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3075 ; 0.932 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1241 ; 0.298 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4946 ; 1.511 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1795 ; 2.532 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1682 ; 3.635 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 34 REMARK 3 ORIGIN FOR THE GROUP (A): -4.0010 -7.6520 0.2240 REMARK 3 T TENSOR REMARK 3 T11: -0.0435 T22: 0.1374 REMARK 3 T33: 0.1800 T12: -0.1353 REMARK 3 T13: -0.0054 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 6.8663 L22: 13.6317 REMARK 3 L33: 0.5614 L12: 3.2159 REMARK 3 L13: -1.7348 L23: 0.4089 REMARK 3 S TENSOR REMARK 3 S11: 0.1370 S12: -0.2620 S13: 0.0124 REMARK 3 S21: -0.0089 S22: -0.3270 S23: -0.9059 REMARK 3 S31: -0.4183 S32: 0.6697 S33: 0.1900 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 147 REMARK 3 ORIGIN FOR THE GROUP (A): -16.0160 -27.7280 0.9270 REMARK 3 T TENSOR REMARK 3 T11: -0.1009 T22: -0.0712 REMARK 3 T33: 0.0628 T12: -0.0106 REMARK 3 T13: 0.0334 T23: -0.0456 REMARK 3 L TENSOR REMARK 3 L11: 1.7923 L22: 2.6727 REMARK 3 L33: 1.4701 L12: -0.6201 REMARK 3 L13: -0.0148 L23: -0.7443 REMARK 3 S TENSOR REMARK 3 S11: -0.1060 S12: 0.1457 S13: -0.1838 REMARK 3 S21: -0.1766 S22: 0.1374 S23: -0.1014 REMARK 3 S31: 0.1286 S32: 0.1143 S33: -0.0315 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 148 A 225 REMARK 3 ORIGIN FOR THE GROUP (A): -23.3890 -12.4690 1.1800 REMARK 3 T TENSOR REMARK 3 T11: -0.0925 T22: -0.0993 REMARK 3 T33: 0.0637 T12: -0.0200 REMARK 3 T13: 0.0185 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 1.6407 L22: 2.0893 REMARK 3 L33: 1.3075 L12: 0.5129 REMARK 3 L13: 0.2587 L23: 0.3988 REMARK 3 S TENSOR REMARK 3 S11: -0.1254 S12: 0.1360 S13: 0.0501 REMARK 3 S21: -0.2013 S22: 0.1396 S23: -0.1258 REMARK 3 S31: -0.1383 S32: 0.0732 S33: -0.0141 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 226 A 313 REMARK 3 ORIGIN FOR THE GROUP (A): -27.3130 -14.8540 9.1500 REMARK 3 T TENSOR REMARK 3 T11: -0.0939 T22: -0.1143 REMARK 3 T33: 0.0310 T12: 0.0221 REMARK 3 T13: 0.0180 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 1.6724 L22: 2.3374 REMARK 3 L33: 0.9602 L12: 0.0148 REMARK 3 L13: 0.3444 L23: 0.1531 REMARK 3 S TENSOR REMARK 3 S11: -0.1508 S12: -0.0149 S13: 0.0512 REMARK 3 S21: 0.1275 S22: 0.0993 S23: 0.1857 REMARK 3 S31: -0.0364 S32: 0.0308 S33: 0.0516 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 25 B 77 REMARK 3 ORIGIN FOR THE GROUP (A): -41.7550 -32.6140 34.7990 REMARK 3 T TENSOR REMARK 3 T11: 0.4104 T22: -0.0198 REMARK 3 T33: 0.1630 T12: -0.0651 REMARK 3 T13: 0.3156 T23: 0.1082 REMARK 3 L TENSOR REMARK 3 L11: 4.4364 L22: 5.1081 REMARK 3 L33: 2.7673 L12: -0.0749 REMARK 3 L13: -0.3401 L23: -0.3304 REMARK 3 S TENSOR REMARK 3 S11: -0.0694 S12: -0.3504 S13: -0.1958 REMARK 3 S21: 1.1155 S22: -0.0873 S23: 0.4866 REMARK 3 S31: 0.5094 S32: -0.2176 S33: 0.1567 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 78 B 125 REMARK 3 ORIGIN FOR THE GROUP (A): -39.0240 -26.4000 36.6320 REMARK 3 T TENSOR REMARK 3 T11: 0.4378 T22: 0.0663 REMARK 3 T33: 0.0348 T12: 0.0160 REMARK 3 T13: 0.2652 T23: 0.1471 REMARK 3 L TENSOR REMARK 3 L11: 2.6853 L22: 2.0333 REMARK 3 L33: 2.7915 L12: -1.0423 REMARK 3 L13: -1.4839 L23: 0.5349 REMARK 3 S TENSOR REMARK 3 S11: -0.1741 S12: -0.4995 S13: -0.3893 REMARK 3 S21: 0.9647 S22: 0.1685 S23: 0.3993 REMARK 3 S31: 0.2008 S32: 0.0338 S33: 0.0055 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 126 B 196 REMARK 3 ORIGIN FOR THE GROUP (A): -28.2510 -24.0030 39.9430 REMARK 3 T TENSOR REMARK 3 T11: 0.5631 T22: 0.1814 REMARK 3 T33: -0.1847 T12: 0.1128 REMARK 3 T13: 0.0784 T23: 0.1564 REMARK 3 L TENSOR REMARK 3 L11: 3.4133 L22: 5.4697 REMARK 3 L33: 1.7065 L12: -1.1147 REMARK 3 L13: 0.9387 L23: 0.4342 REMARK 3 S TENSOR REMARK 3 S11: -0.0110 S12: -0.6510 S13: -0.3518 REMARK 3 S21: 1.2945 S22: 0.2079 S23: -0.2839 REMARK 3 S31: 0.2196 S32: -0.0926 S33: -0.1970 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 197 B 210 REMARK 3 ORIGIN FOR THE GROUP (A): -43.7740 -5.1590 27.8170 REMARK 3 T TENSOR REMARK 3 T11: 0.0551 T22: -0.0628 REMARK 3 T33: 0.1070 T12: 0.0077 REMARK 3 T13: 0.1502 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 14.8082 L22: 8.0557 REMARK 3 L33: 8.9105 L12: -2.3154 REMARK 3 L13: -2.6423 L23: -1.0843 REMARK 3 S TENSOR REMARK 3 S11: -0.3382 S12: -0.3640 S13: -0.5142 REMARK 3 S21: 0.6390 S22: -0.0233 S23: 0.8177 REMARK 3 S31: 0.3401 S32: -0.6085 S33: 0.3615 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 211 B 313 REMARK 3 ORIGIN FOR THE GROUP (A): -31.8790 -14.7360 31.3120 REMARK 3 T TENSOR REMARK 3 T11: 0.2686 T22: 0.0415 REMARK 3 T33: -0.0746 T12: 0.0844 REMARK 3 T13: 0.0964 T23: 0.0692 REMARK 3 L TENSOR REMARK 3 L11: 1.3560 L22: 3.3345 REMARK 3 L33: 1.3086 L12: -0.4028 REMARK 3 L13: -0.4486 L23: 0.8966 REMARK 3 S TENSOR REMARK 3 S11: -0.2006 S12: -0.3694 S13: -0.1083 REMARK 3 S21: 0.9634 S22: 0.1566 S23: 0.1830 REMARK 3 S31: 0.1280 S32: 0.0303 S33: 0.0439 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS.ONLY RESIDUAL ARE GIVEN FOR U VALUES. REMARK 3 REST DENSITIES IN BOTH ACTIVE SITES WERE MODELED AND REMARK 3 REFINED AS TRIS BUFFER MOLECULES. REMARK 4 REMARK 4 2WIR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAY-09. REMARK 100 THE PDBE ID CODE IS EBI-39812. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MULTILAYER REMARK 200 OPTICS : OSMIC MULTILAYER REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46646 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.00 REMARK 200 RESOLUTION RANGE LOW (A) : 44.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : 6.7 REMARK 200 R MERGE (I) : 0.06 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.70 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 59.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.8 REMARK 200 R MERGE FOR SHELL (I) : 0.40 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDN ENTRY 2C7B REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 UL PROTEIN (IN 20 MM TRIS PH REMARK 280 8.0) PLUS 2 UL RESERVOIR (30% MPD, 10% PEG 6000, 0.1 M REMARK 280 NAOAC) REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.95950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.63550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.95950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.63550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -61.91900 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2006 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2116 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2147 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2028 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 LEU A 18 REMARK 465 MET B 1 REMARK 465 ALA B 15 REMARK 465 ALA B 16 REMARK 465 GLN B 17 REMARK 465 LEU B 18 REMARK 465 GLN B 19 REMARK 465 PHE B 20 REMARK 465 ARG B 21 REMARK 465 PRO B 22 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 17 CG CD OE1 NE2 REMARK 470 GLN A 19 CG CD OE1 NE2 REMARK 470 GLN B 12 CG CD OE1 NE2 REMARK 470 GLN B 13 CG CD OE1 NE2 REMARK 470 ASP B 23 CG OD1 OD2 REMARK 470 MET B 24 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 21 NH2 ARG A 21 2555 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 74 CD GLU A 74 OE2 0.093 REMARK 500 GLU A 93 CB GLU A 93 CG 0.122 REMARK 500 VAL A 248 CB VAL A 248 CG1 0.165 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 100 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ASP A 129 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG B 273 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 13 49.52 -71.96 REMARK 500 SER A 157 -114.91 66.37 REMARK 500 TYR A 185 63.85 32.76 REMARK 500 VAL A 207 -61.83 69.89 REMARK 500 LEU A 209 75.76 60.55 REMARK 500 TYR A 253 56.97 -105.71 REMARK 500 PHE B 87 -3.30 72.71 REMARK 500 PHE B 123 130.04 -35.31 REMARK 500 ASP B 139 1.78 -69.77 REMARK 500 TYR B 141 -55.33 -24.08 REMARK 500 SER B 157 -112.83 67.49 REMARK 500 TYR B 185 62.75 31.08 REMARK 500 SER B 193 112.28 -37.15 REMARK 500 VAL B 207 -60.84 59.12 REMARK 500 SER B 234 78.42 -118.13 REMARK 500 TYR B 253 65.04 -103.95 REMARK 500 MET B 310 55.13 32.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 TRIS-HYDROXY-METHYL-AMINO METHANE (TRS): BUFFER MOLECULE REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A1314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B1314 DBREF 2WIR A 1 313 UNP A3MVR4 A3MVR4_PYRCJ 1 313 DBREF 2WIR B 1 313 UNP A3MVR4 A3MVR4_PYRCJ 1 313 SEQRES 1 A 313 MET PRO LEU SER PRO ILE LEU ARG GLN ILE LEU GLN GLN SEQRES 2 A 313 LEU ALA ALA GLN LEU GLN PHE ARG PRO ASP MET ASP VAL SEQRES 3 A 313 LYS THR VAL ARG GLU GLN PHE GLU LYS SER SER LEU ILE SEQRES 4 A 313 LEU VAL LYS MET ALA ASN GLU PRO ILE HIS ARG VAL GLU SEQRES 5 A 313 ASP ILE THR ILE PRO GLY ARG GLY GLY PRO ILE ARG ALA SEQRES 6 A 313 ARG VAL TYR ARG PRO ARG ASP GLY GLU ARG LEU PRO ALA SEQRES 7 A 313 VAL VAL TYR TYR HIS GLY GLY GLY PHE VAL LEU GLY SER SEQRES 8 A 313 VAL GLU THR HIS ASP HIS VAL CYS ARG ARG LEU ALA ASN SEQRES 9 A 313 LEU SER GLY ALA VAL VAL VAL SER VAL ASP TYR ARG LEU SEQRES 10 A 313 ALA PRO GLU HIS LYS PHE PRO ALA ALA VAL GLU ASP ALA SEQRES 11 A 313 TYR ASP ALA ALA LYS TRP VAL ALA ASP ASN TYR ASP LYS SEQRES 12 A 313 LEU GLY VAL ASP ASN GLY LYS ILE ALA VAL ALA GLY ASP SEQRES 13 A 313 SER ALA GLY GLY ASN LEU ALA ALA VAL THR ALA ILE MET SEQRES 14 A 313 ALA ARG ASP ARG GLY GLU SER PHE VAL LYS TYR GLN VAL SEQRES 15 A 313 LEU ILE TYR PRO ALA VAL ASN LEU THR GLY SER PRO THR SEQRES 16 A 313 VAL SER ARG VAL GLU TYR SER GLY PRO GLU TYR VAL ILE SEQRES 17 A 313 LEU THR ALA ASP LEU MET ALA TRP PHE GLY ARG GLN TYR SEQRES 18 A 313 PHE SER LYS PRO GLN ASP ALA LEU SER PRO TYR ALA SER SEQRES 19 A 313 PRO ILE PHE ALA ASP LEU SER ASN LEU PRO PRO ALA LEU SEQRES 20 A 313 VAL ILE THR ALA GLU TYR ASP PRO LEU ARG ASP GLU GLY SEQRES 21 A 313 GLU LEU TYR ALA HIS LEU LEU LYS THR ARG GLY VAL ARG SEQRES 22 A 313 ALA VAL ALA VAL ARG TYR ASN GLY VAL ILE HIS GLY PHE SEQRES 23 A 313 VAL ASN PHE TYR PRO ILE LEU GLU GLU GLY ARG GLU ALA SEQRES 24 A 313 VAL SER GLN ILE ALA ALA SER ILE LYS SER MET ALA VAL SEQRES 25 A 313 ALA SEQRES 1 B 313 MET PRO LEU SER PRO ILE LEU ARG GLN ILE LEU GLN GLN SEQRES 2 B 313 LEU ALA ALA GLN LEU GLN PHE ARG PRO ASP MET ASP VAL SEQRES 3 B 313 LYS THR VAL ARG GLU GLN PHE GLU LYS SER SER LEU ILE SEQRES 4 B 313 LEU VAL LYS MET ALA ASN GLU PRO ILE HIS ARG VAL GLU SEQRES 5 B 313 ASP ILE THR ILE PRO GLY ARG GLY GLY PRO ILE ARG ALA SEQRES 6 B 313 ARG VAL TYR ARG PRO ARG ASP GLY GLU ARG LEU PRO ALA SEQRES 7 B 313 VAL VAL TYR TYR HIS GLY GLY GLY PHE VAL LEU GLY SER SEQRES 8 B 313 VAL GLU THR HIS ASP HIS VAL CYS ARG ARG LEU ALA ASN SEQRES 9 B 313 LEU SER GLY ALA VAL VAL VAL SER VAL ASP TYR ARG LEU SEQRES 10 B 313 ALA PRO GLU HIS LYS PHE PRO ALA ALA VAL GLU ASP ALA SEQRES 11 B 313 TYR ASP ALA ALA LYS TRP VAL ALA ASP ASN TYR ASP LYS SEQRES 12 B 313 LEU GLY VAL ASP ASN GLY LYS ILE ALA VAL ALA GLY ASP SEQRES 13 B 313 SER ALA GLY GLY ASN LEU ALA ALA VAL THR ALA ILE MET SEQRES 14 B 313 ALA ARG ASP ARG GLY GLU SER PHE VAL LYS TYR GLN VAL SEQRES 15 B 313 LEU ILE TYR PRO ALA VAL ASN LEU THR GLY SER PRO THR SEQRES 16 B 313 VAL SER ARG VAL GLU TYR SER GLY PRO GLU TYR VAL ILE SEQRES 17 B 313 LEU THR ALA ASP LEU MET ALA TRP PHE GLY ARG GLN TYR SEQRES 18 B 313 PHE SER LYS PRO GLN ASP ALA LEU SER PRO TYR ALA SER SEQRES 19 B 313 PRO ILE PHE ALA ASP LEU SER ASN LEU PRO PRO ALA LEU SEQRES 20 B 313 VAL ILE THR ALA GLU TYR ASP PRO LEU ARG ASP GLU GLY SEQRES 21 B 313 GLU LEU TYR ALA HIS LEU LEU LYS THR ARG GLY VAL ARG SEQRES 22 B 313 ALA VAL ALA VAL ARG TYR ASN GLY VAL ILE HIS GLY PHE SEQRES 23 B 313 VAL ASN PHE TYR PRO ILE LEU GLU GLU GLY ARG GLU ALA SEQRES 24 B 313 VAL SER GLN ILE ALA ALA SER ILE LYS SER MET ALA VAL SEQRES 25 B 313 ALA HET TRS A1314 8 HET TRS B1314 8 HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 3 TRS 2(C4 H12 N O3 1+) FORMUL 4 HOH *211(H2 O) HELIX 1 1 SER A 4 GLN A 13 1 10 HELIX 2 2 ASP A 25 ASN A 45 1 21 HELIX 3 3 VAL A 92 THR A 94 5 3 HELIX 4 4 HIS A 95 GLY A 107 1 13 HELIX 5 5 PRO A 124 ASN A 140 1 17 HELIX 6 6 ASN A 140 GLY A 145 1 6 HELIX 7 7 SER A 157 ARG A 173 1 17 HELIX 8 8 THR A 195 TYR A 201 1 7 HELIX 9 9 GLY A 203 VAL A 207 5 5 HELIX 10 10 THR A 210 PHE A 222 1 13 HELIX 11 11 LYS A 224 SER A 230 5 7 HELIX 12 12 SER A 234 ALA A 238 5 5 HELIX 13 13 LEU A 256 ARG A 270 1 15 HELIX 14 14 GLY A 285 TYR A 290 5 6 HELIX 15 15 LEU A 293 MET A 310 1 18 HELIX 16 16 SER B 4 LEU B 14 1 11 HELIX 17 17 ASP B 25 ASN B 45 1 21 HELIX 18 18 HIS B 95 GLY B 107 1 13 HELIX 19 19 PRO B 124 ASP B 139 1 16 HELIX 20 20 ASN B 140 GLY B 145 1 6 HELIX 21 21 SER B 157 ARG B 173 1 17 HELIX 22 22 THR B 195 TYR B 201 1 7 HELIX 23 23 GLY B 203 VAL B 207 5 5 HELIX 24 24 THR B 210 PHE B 222 1 13 HELIX 25 25 LYS B 224 SER B 230 5 7 HELIX 26 26 SER B 234 ALA B 238 5 5 HELIX 27 27 LEU B 256 ARG B 270 1 15 HELIX 28 28 GLY B 285 TYR B 290 5 6 HELIX 29 29 LEU B 293 SER B 309 1 17 SHEET 1 AA16 ARG A 50 GLY A 58 0 SHEET 2 AA16 GLY A 61 ARG A 69 -1 O GLY A 61 N GLY A 58 SHEET 3 AA16 VAL A 109 ASP A 114 -1 O VAL A 110 N TYR A 68 SHEET 4 AA16 LEU A 76 TYR A 82 1 O PRO A 77 N VAL A 109 SHEET 5 AA16 VAL A 146 ASP A 156 1 N ASP A 147 O LEU A 76 SHEET 6 AA16 VAL A 178 ILE A 184 1 N LYS A 179 O ILE A 151 SHEET 7 AA16 ALA A 246 TYR A 253 1 O LEU A 247 N LEU A 183 SHEET 8 AA16 ALA A 274 ILE A 283 1 O VAL A 275 N VAL A 248 SHEET 9 AA16 ALA B 274 ILE B 283 -1 O ALA B 276 N ASN A 280 SHEET 10 AA16 ALA B 246 TYR B 253 1 O ALA B 246 N VAL B 275 SHEET 11 AA16 TYR B 180 ILE B 184 1 O GLN B 181 N LEU B 247 SHEET 12 AA16 VAL B 146 ASP B 156 1 O VAL B 153 N VAL B 182 SHEET 13 AA16 LEU B 76 TYR B 82 1 O LEU B 76 N ASP B 147 SHEET 14 AA16 VAL B 109 ASP B 114 1 O VAL B 109 N VAL B 79 SHEET 15 AA16 GLY B 61 ARG B 69 -1 O ARG B 64 N ASP B 114 SHEET 16 AA16 ARG B 50 GLY B 58 -1 O ARG B 50 N ARG B 69 CISPEP 1 ALA A 118 PRO A 119 0 -0.59 CISPEP 2 PHE A 123 PRO A 124 0 7.83 CISPEP 3 ALA B 118 PRO B 119 0 12.16 CISPEP 4 PHE B 123 PRO B 124 0 7.99 SITE 1 AC1 4 LEU A 190 ARG A 198 MET A 214 PHE A 217 SITE 1 AC2 5 LEU B 190 LEU B 209 MET B 214 PHE B 217 SITE 2 AC2 5 GLY B 218 CRYST1 61.919 127.271 93.727 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016150 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007857 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010669 0.00000 MTRIX1 1 -0.950445 -0.310734 0.009962 -60.67547 1 MTRIX2 1 -0.310542 0.950406 0.017086 -9.96093 1 MTRIX3 1 -0.014777 0.013146 -0.999804 38.11920 1