HEADER HYDROLASE INHIBITOR 25-MAY-09 2WJ9 TITLE ARDB COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERGENIC-REGION PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ARDB; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI CFT073; SOURCE 3 ORGANISM_TAXID: 199310; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTIRESTRICTION, HYDROLASE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR N.D.WEIKART,G.ROBERTS,K.A.JOHNSON,M.OKE,L.P.COOPER,S.A.MCMAHON, AUTHOR 2 J.H.WHITE,H.LIU,L.G.CARTER,M.D.WALKINSHAW,G.W.BLAKELY,J.H.NAISMITH, AUTHOR 3 D.T.F.DRYDEN REVDAT 2 02-MAY-18 2WJ9 1 SOURCE REMARK REVDAT 1 18-AUG-10 2WJ9 0 JRNL AUTH M.OKE,L.G.CARTER,K.A.JOHNSON,H.LIU,S.A.MCMAHON,X.YAN, JRNL AUTH 2 M.KEROU,N.D.WEIKART,N.KADI,M.A.SHEIKH,S.SCHMELZ,M.DORWARD, JRNL AUTH 3 M.ZAWADZKI,C.COZENS,H.FALCONER,H.POWERS,I.M.OVERTON, JRNL AUTH 4 C.A.J.VAN NIEKERK,X.PENG,P.PATEL,R.A.GARRETT, JRNL AUTH 5 D.PRANGISHVILI C,H.BOTTING,P.J.COOTE,D.T.F.DRYDEN, JRNL AUTH 6 G.J.BARTON,U.SCHWARZ-LINEK,G.L.CHALLIS,G.L.TAYLOR,M.F.WHITE, JRNL AUTH 7 J.H.NAISMITH JRNL TITL THE SCOTTISH STRUCTURAL PROTEOMICS FACILITY: TARGETS, JRNL TITL 2 METHODS AND OUTPUTS. JRNL REF J.STRUCT.FUNCT.GENOMICS V. 11 167 2010 JRNL REFN ISSN 1345-711X JRNL PMID 20419351 JRNL DOI 10.1007/S10969-010-9090-Y REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 80.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 36476 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1934 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.62 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2758 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2253 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 55 REMARK 3 SOLVENT ATOMS : 181 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.32000 REMARK 3 B22 (A**2) : -1.99000 REMARK 3 B33 (A**2) : -0.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.101 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.097 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.315 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2440 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1617 ; 0.008 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3327 ; 1.241 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3894 ; 0.901 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 298 ; 4.776 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;32.748 ;23.363 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 370 ;13.230 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.371 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 353 ; 0.159 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2685 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 509 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 485 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1583 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1162 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1087 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 108 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 21 ; 0.222 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 45 ; 0.243 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.326 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1887 ; 0.846 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 579 ; 0.122 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2348 ; 0.776 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1180 ; 1.384 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 971 ; 1.711 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 21 A 60 5 REMARK 3 1 B 21 B 60 5 REMARK 3 2 A 71 A 82 5 REMARK 3 2 B 71 B 82 5 REMARK 3 3 A 92 A 157 5 REMARK 3 3 B 92 B 157 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 676 ; 0.19 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 676 ; 0.19 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 875 ; 0.59 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 875 ; 0.59 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 676 ; 0.61 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 676 ; 0.61 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 875 ; 1.02 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 875 ; 1.02 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): -23.5650 5.4420 -1.5440 REMARK 3 T TENSOR REMARK 3 T11: -0.1399 T22: -0.0639 REMARK 3 T33: -0.1356 T12: -0.0319 REMARK 3 T13: 0.0114 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 1.4766 L22: 3.6402 REMARK 3 L33: 1.5412 L12: -0.0592 REMARK 3 L13: -0.9220 L23: -0.0138 REMARK 3 S TENSOR REMARK 3 S11: -0.0517 S12: 0.1479 S13: -0.0375 REMARK 3 S21: -0.2412 S22: 0.0069 S23: 0.0253 REMARK 3 S31: 0.1125 S32: -0.1283 S33: 0.0448 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 157 REMARK 3 RESIDUE RANGE : A 1162 A 1162 REMARK 3 ORIGIN FOR THE GROUP (A): -34.5090 15.6250 22.0580 REMARK 3 T TENSOR REMARK 3 T11: -0.1786 T22: -0.1429 REMARK 3 T33: -0.1397 T12: 0.0021 REMARK 3 T13: 0.0055 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.1853 L22: 2.4039 REMARK 3 L33: 1.7616 L12: -0.0881 REMARK 3 L13: -0.4257 L23: -0.0504 REMARK 3 S TENSOR REMARK 3 S11: -0.0421 S12: -0.0644 S13: -0.0314 REMARK 3 S21: 0.1699 S22: 0.0265 S23: 0.1527 REMARK 3 S31: 0.0885 S32: -0.0516 S33: 0.0156 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2WJ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1290039833. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36476 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 23.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.95000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.30500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.82000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.30500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.95000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.82000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 MET A -22 REMARK 465 ASN A -21 REMARK 465 VAL A -20 REMARK 465 MET A -19 REMARK 465 LEU A -18 REMARK 465 PRO A -17 REMARK 465 ALA A -16 REMARK 465 PRO A -15 REMARK 465 ASP A -14 REMARK 465 LEU A -13 REMARK 465 TYR A -12 REMARK 465 SER A -11 REMARK 465 LEU A -10 REMARK 465 SER A -9 REMARK 465 PHE A -8 REMARK 465 ILE A -7 REMARK 465 HIS A -6 REMARK 465 ILE A -5 REMARK 465 THR A -4 REMARK 465 ARG A -3 REMARK 465 ILE A -2 REMARK 465 SER A -1 REMARK 465 TYR A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 THR A 3 REMARK 465 LEU A 4 REMARK 465 SER A 5 REMARK 465 GLN A 6 REMARK 465 ASN A 7 REMARK 465 THR A 8 REMARK 465 GLU A 62 REMARK 465 ASN A 63 REMARK 465 TYR A 64 REMARK 465 GLY A 66 REMARK 465 GLY A 67 REMARK 465 PRO A 85 REMARK 465 ASP A 86 REMARK 465 ASP A 87 REMARK 465 ASP A 88 REMARK 465 ASP A 89 REMARK 465 ASP A 90 REMARK 465 MET B -23 REMARK 465 MET B -22 REMARK 465 ASN B -21 REMARK 465 VAL B -20 REMARK 465 MET B -19 REMARK 465 LEU B -18 REMARK 465 PRO B -17 REMARK 465 ALA B -16 REMARK 465 PRO B -15 REMARK 465 ASP B -14 REMARK 465 LEU B -13 REMARK 465 TYR B -12 REMARK 465 SER B -11 REMARK 465 LEU B -10 REMARK 465 SER B -9 REMARK 465 PHE B -8 REMARK 465 ILE B -7 REMARK 465 HIS B -6 REMARK 465 ILE B -5 REMARK 465 THR B -4 REMARK 465 ARG B -3 REMARK 465 ILE B -2 REMARK 465 SER B -1 REMARK 465 TYR B 0 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 THR B 3 REMARK 465 LEU B 4 REMARK 465 SER B 5 REMARK 465 GLN B 6 REMARK 465 ASN B 7 REMARK 465 ASP B 86 REMARK 465 ASP B 87 REMARK 465 ASP B 88 REMARK 465 ASP B 89 REMARK 465 ASP B 90 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 149 S2 BME A 1158 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2014 O HOH B 2037 3445 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 10 N SER A 10 CA 0.347 REMARK 500 SER A 10 N SER A 10 CA 0.350 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 10 N - CA - CB ANGL. DEV. = -12.7 DEGREES REMARK 500 SER A 10 N - CA - CB ANGL. DEV. = -12.1 DEGREES REMARK 500 SER A 10 N - CA - C ANGL. DEV. = -19.4 DEGREES REMARK 500 SER A 10 N - CA - C ANGL. DEV. = -19.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 17 -77.87 -114.16 REMARK 500 ASN B 63 -101.98 -129.10 REMARK 500 CYS B 65 -75.31 -108.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 10 11.53 REMARK 500 SER A 10 11.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 SULFATE (SO4): SULFATE ION REMARK 600 CHLORIDE (CL): CHLORIDE ION REMARK 600 BETA MERCAPTO ETHANOL (BME): COVALENT LINK TO CYS RESIDUES, REMARK 600 THINK ARISES DURING PURIFICATION REMARK 600 METHANPENTANDIOL (MPD): METHANPENTANDIOL FROM SOLVENT REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1158 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 1158 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 1159 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 1160 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1159 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 1161 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 1160 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 1161 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 1162 DBREF 2WJ9 A 1 157 UNP Q8VRA1 Q8VRA1_ECOLX 1 157 DBREF 2WJ9 B 1 157 UNP Q8VRA1 Q8VRA1_ECOLX 1 157 SEQADV 2WJ9 MET A -23 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 MET A -22 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 ASN A -21 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 VAL A -20 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 MET A -19 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 LEU A -18 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 PRO A -17 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 ALA A -16 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 PRO A -15 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 ASP A -14 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 LEU A -13 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 TYR A -12 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 SER A -11 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 LEU A -10 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 SER A -9 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 PHE A -8 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 ILE A -7 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 HIS A -6 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 ILE A -5 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 THR A -4 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 ARG A -3 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 ILE A -2 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 SER A -1 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 TYR A 0 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 MET B -23 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 MET B -22 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 ASN B -21 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 VAL B -20 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 MET B -19 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 LEU B -18 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 PRO B -17 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 ALA B -16 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 PRO B -15 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 ASP B -14 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 LEU B -13 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 TYR B -12 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 SER B -11 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 LEU B -10 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 SER B -9 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 PHE B -8 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 ILE B -7 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 HIS B -6 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 ILE B -5 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 THR B -4 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 ARG B -3 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 ILE B -2 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 SER B -1 UNP Q8VRA1 EXPRESSION TAG SEQADV 2WJ9 TYR B 0 UNP Q8VRA1 EXPRESSION TAG SEQRES 1 A 181 MET MET ASN VAL MET LEU PRO ALA PRO ASP LEU TYR SER SEQRES 2 A 181 LEU SER PHE ILE HIS ILE THR ARG ILE SER TYR MET LYS SEQRES 3 A 181 THR LEU SER GLN ASN THR THR SER SER ALA CYS ALA PRO SEQRES 4 A 181 GLU THR GLY LEU GLN GLN LEU VAL ALA THR ILE VAL PRO SEQRES 5 A 181 ASP GLU GLN ARG ILE SER PHE TRP PRO GLN HIS PHE GLY SEQRES 6 A 181 LEU ILE PRO GLN TRP VAL THR LEU GLU PRO ARG VAL PHE SEQRES 7 A 181 GLY TRP MET ASP ARG LEU CYS GLU ASN TYR CYS GLY GLY SEQRES 8 A 181 ILE TRP ASN LEU TYR THR LEU ASN ASN GLY GLY ALA PHE SEQRES 9 A 181 MET ALA PRO GLU PRO ASP ASP ASP ASP ASP GLU THR TRP SEQRES 10 A 181 VAL LEU PHE ASN ALA MET ASN GLY ASN ARG ALA GLU MET SEQRES 11 A 181 SER PRO GLU ALA ALA GLY ILE ALA ALA CYS LEU MET THR SEQRES 12 A 181 TYR SER HIS HIS ALA CYS ARG THR GLU CYS TYR ALA MET SEQRES 13 A 181 THR VAL HIS TYR TYR ARG LEU ARG ASP TYR ALA LEU GLN SEQRES 14 A 181 HIS PRO GLU CYS SER ALA ILE MET ARG ILE ILE ASP SEQRES 1 B 181 MET MET ASN VAL MET LEU PRO ALA PRO ASP LEU TYR SER SEQRES 2 B 181 LEU SER PHE ILE HIS ILE THR ARG ILE SER TYR MET LYS SEQRES 3 B 181 THR LEU SER GLN ASN THR THR SER SER ALA CYS ALA PRO SEQRES 4 B 181 GLU THR GLY LEU GLN GLN LEU VAL ALA THR ILE VAL PRO SEQRES 5 B 181 ASP GLU GLN ARG ILE SER PHE TRP PRO GLN HIS PHE GLY SEQRES 6 B 181 LEU ILE PRO GLN TRP VAL THR LEU GLU PRO ARG VAL PHE SEQRES 7 B 181 GLY TRP MET ASP ARG LEU CYS GLU ASN TYR CYS GLY GLY SEQRES 8 B 181 ILE TRP ASN LEU TYR THR LEU ASN ASN GLY GLY ALA PHE SEQRES 9 B 181 MET ALA PRO GLU PRO ASP ASP ASP ASP ASP GLU THR TRP SEQRES 10 B 181 VAL LEU PHE ASN ALA MET ASN GLY ASN ARG ALA GLU MET SEQRES 11 B 181 SER PRO GLU ALA ALA GLY ILE ALA ALA CYS LEU MET THR SEQRES 12 B 181 TYR SER HIS HIS ALA CYS ARG THR GLU CYS TYR ALA MET SEQRES 13 B 181 THR VAL HIS TYR TYR ARG LEU ARG ASP TYR ALA LEU GLN SEQRES 14 B 181 HIS PRO GLU CYS SER ALA ILE MET ARG ILE ILE ASP HET BME A1158 4 HET MPD A1159 8 HET BME A1160 4 HET BME A1161 4 HET SO4 A1162 5 HET SO4 B1158 5 HET BME B1159 4 HET MPD B1160 8 HET MPD B1161 8 HET BME B1162 4 HET CL B1163 1 HETNAM BME BETA-MERCAPTOETHANOL HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 3 BME 5(C2 H6 O S) FORMUL 4 MPD 3(C6 H14 O2) FORMUL 7 SO4 2(O4 S 2-) FORMUL 13 CL CL 1- FORMUL 14 HOH *181(H2 O) HELIX 1 1 PRO A 28 ILE A 33 1 6 HELIX 2 2 SER A 34 GLY A 41 1 8 HELIX 3 3 GLN A 45 VAL A 47 5 3 HELIX 4 4 THR A 48 CYS A 61 1 14 HELIX 5 5 SER A 107 GLU A 128 1 22 HELIX 6 6 CYS A 129 HIS A 146 1 18 HELIX 7 7 GLU A 148 ILE A 156 1 9 HELIX 8 8 PRO B 28 ILE B 33 5 6 HELIX 9 9 SER B 34 GLY B 41 1 8 HELIX 10 10 GLN B 45 VAL B 47 5 3 HELIX 11 11 THR B 48 CYS B 61 1 14 HELIX 12 12 SER B 107 GLU B 128 1 22 HELIX 13 13 CYS B 129 GLN B 145 1 17 HELIX 14 14 GLU B 148 ASP B 157 1 10 SHEET 1 AA 3 ALA A 24 ILE A 26 0 SHEET 2 AA 3 TRP A 69 LEU A 74 -1 O THR A 73 N THR A 25 SHEET 3 AA 3 ALA A 79 PRO A 83 -1 O PHE A 80 N TYR A 72 SHEET 1 AB 2 TRP A 93 PHE A 96 0 SHEET 2 AB 2 ARG A 103 MET A 106 -1 O ALA A 104 N LEU A 95 SHEET 1 BA 3 ALA B 24 ILE B 26 0 SHEET 2 BA 3 TRP B 69 LEU B 74 -1 O THR B 73 N THR B 25 SHEET 3 BA 3 ALA B 79 PRO B 83 -1 O PHE B 80 N TYR B 72 SHEET 1 BB 2 TRP B 93 ASN B 97 0 SHEET 2 BB 2 ASN B 102 MET B 106 -1 O ASN B 102 N ASN B 97 SSBOND 1 CYS A 13 CYS B 125 1555 1555 2.05 SSBOND 2 CYS A 61 CYS A 65 1555 1555 2.04 SSBOND 3 CYS A 125 CYS B 13 1555 1555 2.04 SSBOND 4 CYS B 61 CYS B 65 1555 1555 2.05 LINK SG ACYS A 129 S2 BME A1160 1555 1555 2.04 LINK SG BCYS A 129 S2 BME A1161 1555 1555 2.08 LINK SG CYS B 129 S2 BME B1162 1555 1555 2.05 LINK SG CYS B 149 S2 BME B1159 1555 1555 2.03 SITE 1 AC1 5 ARG B 52 ARG B 59 HOH B2096 HOH B2097 SITE 2 AC1 5 HOH B2098 SITE 1 AC2 2 ARG B 52 ARG B 126 SITE 1 AC3 6 TRP B 36 TRP B 46 VAL B 47 LEU B 49 SITE 2 AC3 6 GLU B 50 HOH B2038 SITE 1 AC4 5 CYS A 149 SER A 150 MET A 153 GLU B 50 SITE 2 AC4 5 HOH B2027 SITE 1 AC5 3 LEU B 144 CYS B 149 SER B 150 SITE 1 AC6 9 GLY B 41 LEU B 42 ILE B 43 PRO B 44 SITE 2 AC6 9 TRP B 46 PRO B 147 BME B1162 HOH B2001 SITE 3 AC6 9 HOH B2084 SITE 1 AC7 8 ARG A 103 ARG A 154 PHE B 54 MET B 57 SITE 2 AC7 8 ASP B 58 GLY B 66 TRP B 69 HOH B2046 SITE 1 AC8 8 LEU A 144 GLY B 18 LEU B 19 GLN B 20 SITE 2 AC8 8 VAL B 47 ASP B 141 GLN B 145 HOH B2099 SITE 1 AC9 4 THR A 127 GLU A 128 CYS A 129 BME A1161 SITE 1 BC1 5 CYS A 129 TYR A 130 ALA A 131 BME A1160 SITE 2 BC1 5 HOH B2074 SITE 1 BC2 3 CYS B 129 MPD B1160 HOH B2100 CRYST1 57.900 67.640 80.610 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017271 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014784 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012405 0.00000