HEADER HYDROLASE 25-MAY-09 2WJE TITLE CRYSTAL STRUCTURE OF THE TYROSINE PHOSPHATASE CPS4B FROM STEPTOCOCCUS TITLE 2 PNEUMONIAE TIGR4. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE CPSB; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CPS4B; COMPND 5 EC: 3.1.3.48; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 1313; SOURCE 4 STRAIN: TIGR 4; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA KEYWDS CAPSULE BIOGENESIS/DEGRADATION, MANGANESE, HYDROLASE, PHOSPHATASE, KEYWDS 2 PROTEIN PHOSPHATASE, EXOPOLYSACCHARIDE SYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR G.HAGELUEKEN,H.HUANG,J.H.NAISMITH REVDAT 4 01-MAY-24 2WJE 1 REMARK LINK REVDAT 3 15-SEP-09 2WJE 1 JRNL REVDAT 2 28-JUL-09 2WJE 1 JRNL REVDAT 1 14-JUL-09 2WJE 0 JRNL AUTH G.HAGELUEKEN,H.HUANG,I.L.MAINPRIZE,C.WHITFIELD,J.H.NAISMITH JRNL TITL CRYSTAL STRUCTURES OF WZB OF ESCHERICHIA COLI AND CPSB OF JRNL TITL 2 STREPTOCOCCUS PNEUMONIAE, REPRESENTATIVES OF TWO FAMILIES OF JRNL TITL 3 TYROSINE PHOSPHATASES THAT REGULATE CAPSULE ASSEMBLY. JRNL REF J.MOL.BIOL. V. 392 678 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19616007 JRNL DOI 10.1016/J.JMB.2009.07.026 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 3 NUMBER OF REFLECTIONS : 22180 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.141 REMARK 3 R VALUE (WORKING SET) : 0.139 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1158 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.9903 - 3.7952 0.99 3009 148 0.1511 0.2048 REMARK 3 2 3.7952 - 3.0132 0.98 2821 165 0.1415 0.2029 REMARK 3 3 3.0132 - 2.6326 0.97 2790 145 0.1396 0.1835 REMARK 3 4 2.6326 - 2.3920 0.96 2733 157 0.1362 0.1872 REMARK 3 5 2.3920 - 2.2206 0.96 2696 157 0.1240 0.1836 REMARK 3 6 2.2206 - 2.0897 0.95 2676 142 0.1182 0.1707 REMARK 3 7 2.0897 - 1.9851 0.91 2556 146 0.1141 0.1626 REMARK 3 8 1.9851 - 1.8987 0.62 1741 98 0.1245 0.1720 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 54.69 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.02260 REMARK 3 B22 (A**2) : 4.35130 REMARK 3 B33 (A**2) : -0.32870 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2105 REMARK 3 ANGLE : 1.106 2857 REMARK 3 CHIRALITY : 0.075 313 REMARK 3 PLANARITY : 0.005 367 REMARK 3 DIHEDRAL : 14.815 822 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 4:92) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8860 -3.3158 26.9328 REMARK 3 T TENSOR REMARK 3 T11: 0.0612 T22: 0.0734 REMARK 3 T33: 0.0566 T12: -0.0062 REMARK 3 T13: 0.0080 T23: -0.0316 REMARK 3 L TENSOR REMARK 3 L11: 0.4872 L22: 0.4988 REMARK 3 L33: 0.3057 L12: -0.0322 REMARK 3 L13: 0.2529 L23: 0.3080 REMARK 3 S TENSOR REMARK 3 S11: -0.0039 S12: -0.1734 S13: 0.0823 REMARK 3 S21: 0.0845 S22: -0.0136 S23: 0.0454 REMARK 3 S31: -0.0301 S32: -0.0834 S33: 0.0279 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 93:100) REMARK 3 ORIGIN FOR THE GROUP (A): -25.0045 6.9374 15.7528 REMARK 3 T TENSOR REMARK 3 T11: 0.2330 T22: 0.1536 REMARK 3 T33: 0.2804 T12: 0.0970 REMARK 3 T13: -0.0019 T23: -0.1016 REMARK 3 L TENSOR REMARK 3 L11: 0.2593 L22: 0.2872 REMARK 3 L33: 0.1688 L12: -0.6426 REMARK 3 L13: -0.1955 L23: 0.5277 REMARK 3 S TENSOR REMARK 3 S11: 0.1227 S12: -0.0608 S13: 0.2687 REMARK 3 S21: -0.2173 S22: -0.0259 S23: -0.1121 REMARK 3 S31: -0.2148 S32: -0.0704 S33: -0.0769 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 101:207) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7683 -14.5804 11.7805 REMARK 3 T TENSOR REMARK 3 T11: 0.0740 T22: 0.0520 REMARK 3 T33: 0.0585 T12: -0.0080 REMARK 3 T13: -0.0056 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.5577 L22: 0.0963 REMARK 3 L33: 0.5414 L12: -0.0240 REMARK 3 L13: 0.2194 L23: -0.1406 REMARK 3 S TENSOR REMARK 3 S11: 0.0010 S12: -0.0140 S13: -0.0060 REMARK 3 S21: -0.0460 S22: -0.0028 S23: 0.0251 REMARK 3 S31: 0.0471 S32: -0.0205 S33: 0.0034 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 208:222) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3349 -18.0632 20.7970 REMARK 3 T TENSOR REMARK 3 T11: 0.1135 T22: 0.0766 REMARK 3 T33: 0.1136 T12: -0.0076 REMARK 3 T13: -0.0181 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.2870 L22: 0.1775 REMARK 3 L33: 0.7604 L12: -0.1447 REMARK 3 L13: -0.3361 L23: 0.0971 REMARK 3 S TENSOR REMARK 3 S11: -0.0489 S12: -0.0182 S13: -0.0280 REMARK 3 S21: 0.0944 S22: -0.0493 S23: 0.0223 REMARK 3 S31: 0.0840 S32: 0.0158 S33: 0.0787 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 223:247) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2330 -8.5355 8.9686 REMARK 3 T TENSOR REMARK 3 T11: 0.0702 T22: 0.0705 REMARK 3 T33: 0.0720 T12: -0.0142 REMARK 3 T13: -0.0007 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.4181 L22: 0.8006 REMARK 3 L33: 0.3970 L12: 0.0354 REMARK 3 L13: -0.1627 L23: 0.3276 REMARK 3 S TENSOR REMARK 3 S11: 0.0220 S12: -0.0309 S13: -0.0012 REMARK 3 S21: -0.1807 S22: 0.0418 S23: -0.0452 REMARK 3 S31: -0.0796 S32: 0.1229 S33: -0.0684 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2WJE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1290039921. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22224 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.02000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 64.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 61.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.04000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 27.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: UNRELEASED STRUCTURE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA-ACETATE, 35% W/V PEG 400, PH REMARK 280 4.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.99000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.42000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.27000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.42000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.99000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.27000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 ALA A -2 REMARK 465 MET A -1 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ILE A 243 CA CB CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2159 O HOH A 2160 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE A 243 N ILE A 243 CA 1.779 REMARK 500 ILE A 243 CA ILE A 243 C 1.615 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 148 CA - C - N ANGL. DEV. = -13.4 DEGREES REMARK 500 ILE A 243 CB - CA - C ANGL. DEV. = -32.2 DEGREES REMARK 500 ILE A 243 N - CA - CB ANGL. DEV. = -36.8 DEGREES REMARK 500 ILE A 243 N - CA - C ANGL. DEV. = -66.1 DEGREES REMARK 500 ILE A 243 CA - C - O ANGL. DEV. = -29.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 13 -147.56 -150.97 REMARK 500 MET A 47 -48.41 -146.31 REMARK 500 MET A 47 -49.12 -146.00 REMARK 500 HIS A 136 74.69 26.61 REMARK 500 LYS A 148 -71.91 -41.24 REMARK 500 ASN A 202 -177.59 -172.30 REMARK 500 ASP A 204 -88.62 -113.95 REMARK 500 ILE A 231 -63.46 -131.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS A 148 11.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2016 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH A2020 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A2069 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A2132 DISTANCE = 6.15 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1245 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 5 NE2 REMARK 620 2 HIS A 7 NE2 115.8 REMARK 620 3 GLU A 80 OE2 93.8 92.4 REMARK 620 4 ASP A 199 OD1 80.0 91.1 173.8 REMARK 620 5 HOH A2381 O 117.8 123.4 101.0 81.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1246 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 14 OD1 REMARK 620 2 HIS A 42 NE2 115.6 REMARK 620 3 HIS A 201 NE2 106.0 126.3 REMARK 620 4 HOH A2382 O 98.5 101.3 104.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1244 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 GLU A 108 OE2 93.1 REMARK 620 3 HIS A 136 NE2 102.6 95.4 REMARK 620 4 HOH A2380 O 152.2 87.8 104.9 REMARK 620 5 HOH A2381 O 97.7 152.0 107.2 70.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1244 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1245 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1246 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WJD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TYROSINE PHOSPHATASE CPS4B FROM REMARK 900 STEPTOCOCCUS PNEUMONIAE TIGR4. REMARK 900 RELATED ID: 2WJF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TYROSINE PHOSPHATASE CPS4B FROM REMARK 900 STEPTOCOCCUS PNEUMONIAE TIGR4 IN COMPLEX WITH PHOSPHATE. DBREF 2WJE A -3 0 PDB 2WJE 2WJE -3 0 DBREF 2WJE A 1 243 UNP Q9AHD4 CPSB1_STRPN 1 243 SEQRES 1 A 247 GLY ALA MET GLY MET ILE ASP ILE HIS SER HIS ILE VAL SEQRES 2 A 247 PHE ASP VAL ASP ASP GLY PRO LYS SER ARG GLU GLU SER SEQRES 3 A 247 LYS ALA LEU LEU ALA GLU SER TYR ARG GLN GLY VAL ARG SEQRES 4 A 247 THR ILE VAL SER THR SER HIS ARG ARG LYS GLY MET PHE SEQRES 5 A 247 GLU THR PRO GLU GLU LYS ILE ALA GLU ASN PHE LEU GLN SEQRES 6 A 247 VAL ARG GLU ILE ALA LYS GLU VAL ALA SER ASP LEU VAL SEQRES 7 A 247 ILE ALA TYR GLY ALA GLU ILE TYR TYR THR PRO ASP VAL SEQRES 8 A 247 LEU ASP LYS LEU GLU LYS LYS ARG ILE PRO THR LEU ASN SEQRES 9 A 247 ASP SER ARG TYR ALA LEU ILE GLU PHE SER MET ASN THR SEQRES 10 A 247 PRO TYR ARG ASP ILE HIS SER ALA LEU SER LYS ILE LEU SEQRES 11 A 247 MET LEU GLY ILE THR PRO VAL ILE ALA HIS ILE GLU ARG SEQRES 12 A 247 TYR ASP ALA LEU GLU ASN ASN GLU LYS ARG VAL ARG GLU SEQRES 13 A 247 LEU ILE ASP MET GLY CYS TYR THR GLN VAL ASN SER SER SEQRES 14 A 247 HIS VAL LEU LYS PRO LYS LEU PHE GLY GLU ARG TYR LYS SEQRES 15 A 247 PHE MET LYS LYS ARG ALA GLN TYR PHE LEU GLU GLN ASP SEQRES 16 A 247 LEU VAL HIS VAL ILE ALA SER ASP MET HIS ASN LEU ASP SEQRES 17 A 247 GLY ARG PRO PRO HIS MET ALA GLU ALA TYR ASP LEU VAL SEQRES 18 A 247 THR GLN LYS TYR GLY GLU ALA LYS ALA GLN GLU LEU PHE SEQRES 19 A 247 ILE ASP ASN PRO ARG LYS ILE VAL MET ASP GLN LEU ILE HET MN A1244 1 HET MN A1245 1 HET MN A1246 1 HETNAM MN MANGANESE (II) ION FORMUL 2 MN 3(MN 2+) FORMUL 5 HOH *382(H2 O) HELIX 1 1 SER A 18 GLN A 32 1 15 HELIX 2 2 PRO A 51 ALA A 70 1 20 HELIX 3 3 ASP A 86 LYS A 93 1 8 HELIX 4 4 THR A 98 SER A 102 5 5 HELIX 5 5 PRO A 114 MET A 127 1 14 HELIX 6 6 HIS A 136 TYR A 140 5 5 HELIX 7 7 TYR A 140 GLU A 144 5 5 HELIX 8 8 ASN A 146 MET A 156 1 11 HELIX 9 9 SER A 164 LEU A 168 1 5 HELIX 10 10 TYR A 177 GLN A 190 1 14 HELIX 11 11 HIS A 209 GLY A 222 1 14 HELIX 12 12 GLY A 222 ILE A 231 1 10 HELIX 13 13 ILE A 231 MET A 239 1 9 SHEET 1 AA 3 MET A 1 ASP A 3 0 SHEET 2 AA 3 VAL A 34 VAL A 38 1 N ARG A 35 O MET A 1 SHEET 3 AA 3 VAL A 74 ALA A 76 1 O VAL A 74 N ILE A 37 SHEET 1 AB 6 HIS A 42 ARG A 43 0 SHEET 2 AB 6 GLU A 80 TYR A 82 1 O GLU A 80 N ARG A 43 SHEET 3 AB 6 TYR A 104 GLU A 108 1 O LEU A 106 N ILE A 81 SHEET 4 AB 6 THR A 131 ILE A 134 1 O THR A 131 N ALA A 105 SHEET 5 AB 6 TYR A 159 ASN A 163 1 O TYR A 159 N ILE A 134 SHEET 6 AB 6 VAL A 195 ALA A 197 1 O VAL A 195 N VAL A 162 LINK NE2 HIS A 5 MN MN A1245 1555 1555 2.11 LINK NE2 HIS A 7 MN MN A1245 1555 1555 2.08 LINK OD1 ASP A 14 MN MN A1246 1555 1555 2.14 LINK NE2 HIS A 42 MN MN A1246 1555 1555 2.06 LINK OE1 GLU A 80 MN MN A1244 1555 1555 2.18 LINK OE2 GLU A 80 MN MN A1245 1555 1555 2.11 LINK OE2 GLU A 108 MN MN A1244 1555 1555 2.41 LINK NE2 HIS A 136 MN MN A1244 1555 1555 2.29 LINK OD1 ASP A 199 MN MN A1245 1555 1555 2.19 LINK NE2 HIS A 201 MN MN A1246 1555 1555 2.14 LINK MN MN A1244 O HOH A2380 1555 1555 2.38 LINK MN MN A1244 O HOH A2381 1555 1555 2.41 LINK MN MN A1245 O HOH A2381 1555 1555 1.98 LINK MN MN A1246 O HOH A2382 1555 1555 2.13 SITE 1 AC1 7 GLU A 80 GLU A 108 HIS A 136 ARG A 139 SITE 2 AC1 7 MN A1245 HOH A2380 HOH A2381 SITE 1 AC2 6 HIS A 5 HIS A 7 GLU A 80 ASP A 199 SITE 2 AC2 6 MN A1244 HOH A2381 SITE 1 AC3 4 ASP A 14 HIS A 42 HIS A 201 HOH A2382 CRYST1 43.980 58.540 114.840 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022738 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017082 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008708 0.00000