data_2WJR # _entry.id 2WJR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.308 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2WJR PDBE EBI-39023 WWPDB D_1290039023 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2WJQ _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'NANC PORIN STRUCTURE IN HEXAGONAL CRYSTAL FORM.' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2WJR _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2009-05-28 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wirth, C.' 1 'Condemine, G.' 2 'Schirmer, T.' 3 'Peneff, C.M.' 4 # _citation.id primary _citation.title 'Nanc Crystal Structure, a Model for Outer Membrane Channels of the Acidic Sugar-Specific Kdgm Porin Family.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 394 _citation.page_first 718 _citation.page_last ? _citation.year 2009 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19796645 _citation.pdbx_database_id_DOI 10.1016/J.JMB.2009.09.054 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wirth, C.' 1 ? primary 'Condemine, G.' 2 ? primary 'Boiteux, C.' 3 ? primary 'Berneche, S.' 4 ? primary 'Schirmer, T.' 5 ? primary 'Peneff, C.M.' 6 ? # _cell.entry_id 2WJR _cell.length_a 74.901 _cell.length_b 74.901 _cell.length_c 126.410 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WJR _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PROBABLE N-ACETYLNEURAMINIC ACID OUTER MEMBRANE CHANNEL PROTEIN NANC' 25388.844 1 ? YES 'RESIDUES 25-238' ? 2 non-polymer syn '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 238.305 2 ? ? ? ? 3 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 4 non-polymer syn N-OCTANE 114.229 4 ? ? ? ? 5 water nat water 18.015 113 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'NANR-REGULATED CHANNEL, PORIN NANC, N-ACETYLNEURAMINIC ACID-INDUCIBLE OUTER MEMBRANE CHANNEL PROTEIN NANC' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ALDVRGGYRSGSHAYETRLKVSEGWQNGWWASMESNTWNTIHDNKKENAALNDVQVEVNYAIKLDDQWTVRPGMLTHFSS NGTRYGPYVKLSWDATKDLNFGIRYRYDWKAYRQQDLSGDMSRDNVHRWDGYVTYHINSDFTFAWQTTLYSKQNDYRYAN HKKWATENAFVLQYHMTPDITPYIEYDYLDRQGVYNGRDNLSENSYRIGVSFKL ; _entity_poly.pdbx_seq_one_letter_code_can ;ALDVRGGYRSGSHAYETRLKVSEGWQNGWWASMESNTWNTIHDNKKENAALNDVQVEVNYAIKLDDQWTVRPGMLTHFSS NGTRYGPYVKLSWDATKDLNFGIRYRYDWKAYRQQDLSGDMSRDNVHRWDGYVTYHINSDFTFAWQTTLYSKQNDYRYAN HKKWATENAFVLQYHMTPDITPYIEYDYLDRQGVYNGRDNLSENSYRIGVSFKL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 LEU n 1 3 ASP n 1 4 VAL n 1 5 ARG n 1 6 GLY n 1 7 GLY n 1 8 TYR n 1 9 ARG n 1 10 SER n 1 11 GLY n 1 12 SER n 1 13 HIS n 1 14 ALA n 1 15 TYR n 1 16 GLU n 1 17 THR n 1 18 ARG n 1 19 LEU n 1 20 LYS n 1 21 VAL n 1 22 SER n 1 23 GLU n 1 24 GLY n 1 25 TRP n 1 26 GLN n 1 27 ASN n 1 28 GLY n 1 29 TRP n 1 30 TRP n 1 31 ALA n 1 32 SER n 1 33 MET n 1 34 GLU n 1 35 SER n 1 36 ASN n 1 37 THR n 1 38 TRP n 1 39 ASN n 1 40 THR n 1 41 ILE n 1 42 HIS n 1 43 ASP n 1 44 ASN n 1 45 LYS n 1 46 LYS n 1 47 GLU n 1 48 ASN n 1 49 ALA n 1 50 ALA n 1 51 LEU n 1 52 ASN n 1 53 ASP n 1 54 VAL n 1 55 GLN n 1 56 VAL n 1 57 GLU n 1 58 VAL n 1 59 ASN n 1 60 TYR n 1 61 ALA n 1 62 ILE n 1 63 LYS n 1 64 LEU n 1 65 ASP n 1 66 ASP n 1 67 GLN n 1 68 TRP n 1 69 THR n 1 70 VAL n 1 71 ARG n 1 72 PRO n 1 73 GLY n 1 74 MET n 1 75 LEU n 1 76 THR n 1 77 HIS n 1 78 PHE n 1 79 SER n 1 80 SER n 1 81 ASN n 1 82 GLY n 1 83 THR n 1 84 ARG n 1 85 TYR n 1 86 GLY n 1 87 PRO n 1 88 TYR n 1 89 VAL n 1 90 LYS n 1 91 LEU n 1 92 SER n 1 93 TRP n 1 94 ASP n 1 95 ALA n 1 96 THR n 1 97 LYS n 1 98 ASP n 1 99 LEU n 1 100 ASN n 1 101 PHE n 1 102 GLY n 1 103 ILE n 1 104 ARG n 1 105 TYR n 1 106 ARG n 1 107 TYR n 1 108 ASP n 1 109 TRP n 1 110 LYS n 1 111 ALA n 1 112 TYR n 1 113 ARG n 1 114 GLN n 1 115 GLN n 1 116 ASP n 1 117 LEU n 1 118 SER n 1 119 GLY n 1 120 ASP n 1 121 MET n 1 122 SER n 1 123 ARG n 1 124 ASP n 1 125 ASN n 1 126 VAL n 1 127 HIS n 1 128 ARG n 1 129 TRP n 1 130 ASP n 1 131 GLY n 1 132 TYR n 1 133 VAL n 1 134 THR n 1 135 TYR n 1 136 HIS n 1 137 ILE n 1 138 ASN n 1 139 SER n 1 140 ASP n 1 141 PHE n 1 142 THR n 1 143 PHE n 1 144 ALA n 1 145 TRP n 1 146 GLN n 1 147 THR n 1 148 THR n 1 149 LEU n 1 150 TYR n 1 151 SER n 1 152 LYS n 1 153 GLN n 1 154 ASN n 1 155 ASP n 1 156 TYR n 1 157 ARG n 1 158 TYR n 1 159 ALA n 1 160 ASN n 1 161 HIS n 1 162 LYS n 1 163 LYS n 1 164 TRP n 1 165 ALA n 1 166 THR n 1 167 GLU n 1 168 ASN n 1 169 ALA n 1 170 PHE n 1 171 VAL n 1 172 LEU n 1 173 GLN n 1 174 TYR n 1 175 HIS n 1 176 MET n 1 177 THR n 1 178 PRO n 1 179 ASP n 1 180 ILE n 1 181 THR n 1 182 PRO n 1 183 TYR n 1 184 ILE n 1 185 GLU n 1 186 TYR n 1 187 ASP n 1 188 TYR n 1 189 LEU n 1 190 ASP n 1 191 ARG n 1 192 GLN n 1 193 GLY n 1 194 VAL n 1 195 TYR n 1 196 ASN n 1 197 GLY n 1 198 ARG n 1 199 ASP n 1 200 ASN n 1 201 LEU n 1 202 SER n 1 203 GLU n 1 204 ASN n 1 205 SER n 1 206 TYR n 1 207 ARG n 1 208 ILE n 1 209 GLY n 1 210 VAL n 1 211 SER n 1 212 PHE n 1 213 LYS n 1 214 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain K12 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)OMP8/PLYS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PKSM717 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NANC_ECOLI _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P69856 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2WJR _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 214 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P69856 _struct_ref_seq.db_align_beg 25 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 238 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 215 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2WJR _struct_ref_seq_dif.mon_id ALA _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P69856 _struct_ref_seq_dif.db_mon_id THR _struct_ref_seq_dif.pdbx_seq_db_seq_num 25 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 2 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 EPE non-polymer . '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' HEPES 'C8 H18 N2 O4 S' 238.305 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 OCT non-polymer . N-OCTANE ? 'C8 H18' 114.229 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2WJR _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.7 _exptl_crystal.density_percent_sol 54 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1M HEPES PH 7.5, 52% PEG400, VAPOR DIFFUSION, 295K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_wavelength 1.0000 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2WJR _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 45.00 _reflns.d_resolution_high 1.80 _reflns.number_obs 24521 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.09 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.50 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.3 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.90 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.32 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.30 _reflns_shell.pdbx_redundancy 2.4 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2WJR _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.ls_number_reflns_obs 23265 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.00 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 99.88 _refine.ls_R_factor_obs 0.19527 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19354 _refine.ls_R_factor_R_free 0.22963 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1254 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.958 _refine.correlation_coeff_Fo_to_Fc_free 0.943 _refine.B_iso_mean 22.613 _refine.aniso_B[1][1] 1.75 _refine.aniso_B[2][2] 1.75 _refine.aniso_B[3][3] -2.63 _refine.aniso_B[1][2] 0.88 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.RESIDUES 43 TO 52 ARE DISORDERED' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.124 _refine.pdbx_overall_ESU_R_Free 0.120 _refine.overall_SU_ML 0.092 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.991 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1715 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 67 _refine_hist.number_atoms_solvent 113 _refine_hist.number_atoms_total 1895 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 50.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.021 ? 1839 'X-RAY DIFFRACTION' ? r_bond_other_d 0.006 0.020 ? 1263 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.315 1.922 ? 2491 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.880 3.005 ? 2955 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.206 5.000 ? 206 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.801 23.301 ? 103 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.398 15.000 ? 271 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.663 15.000 ? 14 'X-RAY DIFFRACTION' ? r_chiral_restr 0.078 0.200 ? 238 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 2028 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 424 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.726 1.500 ? 1015 'X-RAY DIFFRACTION' ? r_mcbond_other 0.166 1.500 ? 419 'X-RAY DIFFRACTION' ? r_mcangle_it 1.345 2.000 ? 1633 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.929 3.000 ? 824 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.037 4.500 ? 856 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.800 _refine_ls_shell.d_res_low 1.847 _refine_ls_shell.number_reflns_R_work 1753 _refine_ls_shell.R_factor_R_work 0.276 _refine_ls_shell.percent_reflns_obs 99.89 _refine_ls_shell.R_factor_R_free 0.306 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 97 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2WJR _struct.title 'NanC porin structure in rhombohedral crystal form.' _struct.pdbx_descriptor 'PROBABLE N-ACETYLNEURAMINIC ACID OUTER MEMBRANE CHANNEL PROTEIN NANC' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2WJR _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.text ;CELL MEMBRANE, ION TRANSPORT, TRANSMEMBRANE, PORIN, MEMBRANE, TRANSPORT, BETA-BARREL, KDGM FAMILY, MEMBRANE PROTEIN, SIALIC ACID TRANSLOCATION, MONOMERIC PORIN, SUGAR TRANSPORT, CELL OUTER MEMBRANE, CARBOHYDRATE TRANSPORT, TRANSPORT PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 5 ? # _struct_biol.id 1 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 15 ? AB ? 2 ? AC ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AA 5 6 ? anti-parallel AA 6 7 ? anti-parallel AA 7 8 ? anti-parallel AA 8 9 ? anti-parallel AA 9 10 ? anti-parallel AA 10 11 ? anti-parallel AA 11 12 ? anti-parallel AA 12 13 ? anti-parallel AA 13 14 ? anti-parallel AA 14 15 ? anti-parallel AB 1 2 ? anti-parallel AC 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LEU A 2 ? ARG A 9 ? LEU A 3 ARG A 10 AA 2 ASN A 204 ? PHE A 212 ? ASN A 205 PHE A 213 AA 3 ILE A 180 ? TYR A 188 ? ILE A 181 TYR A 189 AA 4 TRP A 164 ? TYR A 174 ? TRP A 165 TYR A 175 AA 5 PHE A 141 ? LYS A 152 ? PHE A 142 LYS A 153 AA 6 VAL A 126 ? HIS A 136 ? VAL A 127 HIS A 137 AA 7 LEU A 99 ? LYS A 110 ? LEU A 100 LYS A 111 AA 8 GLY A 82 ? THR A 96 ? GLY A 83 THR A 97 AA 9 TRP A 68 ? SER A 79 ? TRP A 69 SER A 80 AA 10 ASP A 53 ? TYR A 60 ? ASP A 54 TYR A 61 AA 11 TRP A 29 ? THR A 40 ? TRP A 30 THR A 41 AA 12 ALA A 14 ? GLY A 24 ? ALA A 15 GLY A 25 AA 13 LEU A 2 ? ARG A 9 ? LEU A 3 ARG A 10 AA 14 ASN A 204 ? PHE A 212 ? ASN A 205 PHE A 213 AA 15 LEU A 2 ? ARG A 9 ? LEU A 3 ARG A 10 AB 1 GLN A 114 ? GLN A 115 ? GLN A 115 GLN A 116 AB 2 MET A 121 ? SER A 122 ? MET A 122 SER A 123 AC 1 GLY A 193 ? TYR A 195 ? GLY A 194 TYR A 196 AC 2 ARG A 198 ? LEU A 201 ? ARG A 199 LEU A 202 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N TYR A 8 ? N TYR A 9 O TYR A 206 ? O TYR A 207 AA 2 3 N SER A 211 ? N SER A 212 O THR A 181 ? O THR A 182 AA 3 4 N TYR A 188 ? N TYR A 189 O ASN A 168 ? O ASN A 169 AA 4 5 N GLN A 173 ? N GLN A 174 O THR A 142 ? O THR A 143 AA 5 6 N SER A 151 ? N SER A 152 O HIS A 127 ? O HIS A 128 AA 6 7 N THR A 134 ? N THR A 135 O ASN A 100 ? O ASN A 101 AA 7 8 N TRP A 109 ? N TRP A 110 O TYR A 85 ? O TYR A 86 AA 8 9 N SER A 92 ? N SER A 93 O THR A 69 ? O THR A 70 AA 9 10 N PHE A 78 ? N PHE A 79 O VAL A 54 ? O VAL A 55 AA 10 11 N ASN A 59 ? N ASN A 60 O TRP A 30 ? O TRP A 31 AA 11 12 N ASN A 39 ? N ASN A 40 O TYR A 15 ? O TYR A 16 AA 12 13 N LYS A 20 ? N LYS A 21 O ASP A 3 ? O ASP A 4 AA 13 14 N TYR A 8 ? N TYR A 9 O TYR A 206 ? O TYR A 207 AA 14 15 N PHE A 212 ? N PHE A 213 O LEU A 2 ? O LEU A 3 AB 1 2 N GLN A 114 ? N GLN A 115 O SER A 122 ? O SER A 123 AC 1 2 N TYR A 195 ? N TYR A 196 O ARG A 198 ? O ARG A 199 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE EPE A 1216' AC2 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE EPE A 1217' AC3 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE PO4 A 1218' AC4 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE OCT A 1219' AC5 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE OCT A 1220' AC6 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE OCT A 1221' AC7 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE OCT A 1222' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 ARG A 9 ? ARG A 10 . ? 1_555 ? 2 AC1 7 HIS A 77 ? HIS A 78 . ? 1_555 ? 3 AC1 7 ARG A 84 ? ARG A 85 . ? 1_555 ? 4 AC1 7 LYS A 110 ? LYS A 111 . ? 1_555 ? 5 AC1 7 TYR A 150 ? TYR A 151 . ? 1_555 ? 6 AC1 7 GLN A 192 ? GLN A 193 . ? 1_555 ? 7 AC1 7 HOH I . ? HOH A 2113 . ? 1_555 ? 8 AC2 9 TRP A 30 ? TRP A 31 . ? 1_555 ? 9 AC2 9 ASN A 59 ? ASN A 60 . ? 1_555 ? 10 AC2 9 ARG A 71 ? ARG A 72 . ? 1_555 ? 11 AC2 9 LYS A 90 ? LYS A 91 . ? 1_555 ? 12 AC2 9 ASN A 100 ? ASN A 101 . ? 1_555 ? 13 AC2 9 GLY A 119 ? GLY A 120 . ? 9_544 ? 14 AC2 9 ASP A 120 ? ASP A 121 . ? 9_544 ? 15 AC2 9 THR A 134 ? THR A 135 . ? 1_555 ? 16 AC2 9 HOH I . ? HOH A 2031 . ? 1_555 ? 17 AC3 3 ARG A 113 ? ARG A 114 . ? 1_555 ? 18 AC3 3 SER A 122 ? SER A 123 . ? 1_555 ? 19 AC3 3 ARG A 123 ? ARG A 124 . ? 1_555 ? 20 AC4 2 GLY A 102 ? GLY A 103 . ? 1_555 ? 21 AC4 2 VAL A 133 ? VAL A 134 . ? 1_555 ? 22 AC5 2 ILE A 137 ? ILE A 138 . ? 1_555 ? 23 AC5 2 PHE A 143 ? PHE A 144 . ? 1_555 ? 24 AC6 1 GLN A 153 ? GLN A 154 . ? 1_555 ? 25 AC7 1 TRP A 129 ? TRP A 130 . ? 2_445 ? # _database_PDB_matrix.entry_id 2WJR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2WJR _atom_sites.fract_transf_matrix[1][1] 0.013351 _atom_sites.fract_transf_matrix[1][2] 0.007708 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015416 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007911 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 2 2 ALA ALA A . n A 1 2 LEU 2 3 3 LEU LEU A . n A 1 3 ASP 3 4 4 ASP ASP A . n A 1 4 VAL 4 5 5 VAL VAL A . n A 1 5 ARG 5 6 6 ARG ARG A . n A 1 6 GLY 6 7 7 GLY GLY A . n A 1 7 GLY 7 8 8 GLY GLY A . n A 1 8 TYR 8 9 9 TYR TYR A . n A 1 9 ARG 9 10 10 ARG ARG A . n A 1 10 SER 10 11 11 SER SER A . n A 1 11 GLY 11 12 12 GLY GLY A . n A 1 12 SER 12 13 13 SER SER A . n A 1 13 HIS 13 14 14 HIS HIS A . n A 1 14 ALA 14 15 15 ALA ALA A . n A 1 15 TYR 15 16 16 TYR TYR A . n A 1 16 GLU 16 17 17 GLU GLU A . n A 1 17 THR 17 18 18 THR THR A . n A 1 18 ARG 18 19 19 ARG ARG A . n A 1 19 LEU 19 20 20 LEU LEU A . n A 1 20 LYS 20 21 21 LYS LYS A . n A 1 21 VAL 21 22 22 VAL VAL A . n A 1 22 SER 22 23 23 SER SER A . n A 1 23 GLU 23 24 24 GLU GLU A . n A 1 24 GLY 24 25 25 GLY GLY A . n A 1 25 TRP 25 26 26 TRP TRP A . n A 1 26 GLN 26 27 27 GLN GLN A . n A 1 27 ASN 27 28 28 ASN ASN A . n A 1 28 GLY 28 29 29 GLY GLY A . n A 1 29 TRP 29 30 30 TRP TRP A . n A 1 30 TRP 30 31 31 TRP TRP A . n A 1 31 ALA 31 32 32 ALA ALA A . n A 1 32 SER 32 33 33 SER SER A . n A 1 33 MET 33 34 34 MET MET A . n A 1 34 GLU 34 35 35 GLU GLU A . n A 1 35 SER 35 36 36 SER SER A . n A 1 36 ASN 36 37 37 ASN ASN A . n A 1 37 THR 37 38 38 THR THR A . n A 1 38 TRP 38 39 39 TRP TRP A . n A 1 39 ASN 39 40 40 ASN ASN A . n A 1 40 THR 40 41 41 THR THR A . n A 1 41 ILE 41 42 42 ILE ILE A . n A 1 42 HIS 42 43 ? ? ? A . n A 1 43 ASP 43 44 ? ? ? A . n A 1 44 ASN 44 45 ? ? ? A . n A 1 45 LYS 45 46 ? ? ? A . n A 1 46 LYS 46 47 ? ? ? A . n A 1 47 GLU 47 48 ? ? ? A . n A 1 48 ASN 48 49 ? ? ? A . n A 1 49 ALA 49 50 ? ? ? A . n A 1 50 ALA 50 51 ? ? ? A . n A 1 51 LEU 51 52 ? ? ? A . n A 1 52 ASN 52 53 53 ASN ASN A . n A 1 53 ASP 53 54 54 ASP ASP A . n A 1 54 VAL 54 55 55 VAL VAL A . n A 1 55 GLN 55 56 56 GLN GLN A . n A 1 56 VAL 56 57 57 VAL VAL A . n A 1 57 GLU 57 58 58 GLU GLU A . n A 1 58 VAL 58 59 59 VAL VAL A . n A 1 59 ASN 59 60 60 ASN ASN A . n A 1 60 TYR 60 61 61 TYR TYR A . n A 1 61 ALA 61 62 62 ALA ALA A . n A 1 62 ILE 62 63 63 ILE ILE A . n A 1 63 LYS 63 64 64 LYS LYS A . n A 1 64 LEU 64 65 65 LEU LEU A . n A 1 65 ASP 65 66 66 ASP ASP A . n A 1 66 ASP 66 67 67 ASP ASP A . n A 1 67 GLN 67 68 68 GLN GLN A . n A 1 68 TRP 68 69 69 TRP TRP A . n A 1 69 THR 69 70 70 THR THR A . n A 1 70 VAL 70 71 71 VAL VAL A . n A 1 71 ARG 71 72 72 ARG ARG A . n A 1 72 PRO 72 73 73 PRO PRO A . n A 1 73 GLY 73 74 74 GLY GLY A . n A 1 74 MET 74 75 75 MET MET A . n A 1 75 LEU 75 76 76 LEU LEU A . n A 1 76 THR 76 77 77 THR THR A . n A 1 77 HIS 77 78 78 HIS HIS A . n A 1 78 PHE 78 79 79 PHE PHE A . n A 1 79 SER 79 80 80 SER SER A . n A 1 80 SER 80 81 81 SER SER A . n A 1 81 ASN 81 82 82 ASN ASN A . n A 1 82 GLY 82 83 83 GLY GLY A . n A 1 83 THR 83 84 84 THR THR A . n A 1 84 ARG 84 85 85 ARG ARG A . n A 1 85 TYR 85 86 86 TYR TYR A . n A 1 86 GLY 86 87 87 GLY GLY A . n A 1 87 PRO 87 88 88 PRO PRO A . n A 1 88 TYR 88 89 89 TYR TYR A . n A 1 89 VAL 89 90 90 VAL VAL A . n A 1 90 LYS 90 91 91 LYS LYS A . n A 1 91 LEU 91 92 92 LEU LEU A . n A 1 92 SER 92 93 93 SER SER A . n A 1 93 TRP 93 94 94 TRP TRP A . n A 1 94 ASP 94 95 95 ASP ASP A . n A 1 95 ALA 95 96 96 ALA ALA A . n A 1 96 THR 96 97 97 THR THR A . n A 1 97 LYS 97 98 98 LYS LYS A . n A 1 98 ASP 98 99 99 ASP ASP A . n A 1 99 LEU 99 100 100 LEU LEU A . n A 1 100 ASN 100 101 101 ASN ASN A . n A 1 101 PHE 101 102 102 PHE PHE A . n A 1 102 GLY 102 103 103 GLY GLY A . n A 1 103 ILE 103 104 104 ILE ILE A . n A 1 104 ARG 104 105 105 ARG ARG A . n A 1 105 TYR 105 106 106 TYR TYR A . n A 1 106 ARG 106 107 107 ARG ARG A . n A 1 107 TYR 107 108 108 TYR TYR A . n A 1 108 ASP 108 109 109 ASP ASP A . n A 1 109 TRP 109 110 110 TRP TRP A . n A 1 110 LYS 110 111 111 LYS LYS A . n A 1 111 ALA 111 112 112 ALA ALA A . n A 1 112 TYR 112 113 113 TYR TYR A . n A 1 113 ARG 113 114 114 ARG ARG A . n A 1 114 GLN 114 115 115 GLN GLN A . n A 1 115 GLN 115 116 116 GLN GLN A . n A 1 116 ASP 116 117 117 ASP ASP A . n A 1 117 LEU 117 118 118 LEU LEU A . n A 1 118 SER 118 119 119 SER SER A . n A 1 119 GLY 119 120 120 GLY GLY A . n A 1 120 ASP 120 121 121 ASP ASP A . n A 1 121 MET 121 122 122 MET MET A . n A 1 122 SER 122 123 123 SER SER A . n A 1 123 ARG 123 124 124 ARG ARG A . n A 1 124 ASP 124 125 125 ASP ASP A . n A 1 125 ASN 125 126 126 ASN ASN A . n A 1 126 VAL 126 127 127 VAL VAL A . n A 1 127 HIS 127 128 128 HIS HIS A . n A 1 128 ARG 128 129 129 ARG ARG A . n A 1 129 TRP 129 130 130 TRP TRP A . n A 1 130 ASP 130 131 131 ASP ASP A . n A 1 131 GLY 131 132 132 GLY GLY A . n A 1 132 TYR 132 133 133 TYR TYR A . n A 1 133 VAL 133 134 134 VAL VAL A . n A 1 134 THR 134 135 135 THR THR A . n A 1 135 TYR 135 136 136 TYR TYR A . n A 1 136 HIS 136 137 137 HIS HIS A . n A 1 137 ILE 137 138 138 ILE ILE A . n A 1 138 ASN 138 139 139 ASN ASN A . n A 1 139 SER 139 140 140 SER SER A . n A 1 140 ASP 140 141 141 ASP ASP A . n A 1 141 PHE 141 142 142 PHE PHE A . n A 1 142 THR 142 143 143 THR THR A . n A 1 143 PHE 143 144 144 PHE PHE A . n A 1 144 ALA 144 145 145 ALA ALA A . n A 1 145 TRP 145 146 146 TRP TRP A . n A 1 146 GLN 146 147 147 GLN GLN A . n A 1 147 THR 147 148 148 THR THR A . n A 1 148 THR 148 149 149 THR THR A . n A 1 149 LEU 149 150 150 LEU LEU A . n A 1 150 TYR 150 151 151 TYR TYR A . n A 1 151 SER 151 152 152 SER SER A . n A 1 152 LYS 152 153 153 LYS LYS A . n A 1 153 GLN 153 154 154 GLN GLN A . n A 1 154 ASN 154 155 155 ASN ASN A . n A 1 155 ASP 155 156 156 ASP ASP A . n A 1 156 TYR 156 157 157 TYR TYR A . n A 1 157 ARG 157 158 158 ARG ARG A . n A 1 158 TYR 158 159 159 TYR TYR A . n A 1 159 ALA 159 160 160 ALA ALA A . n A 1 160 ASN 160 161 161 ASN ASN A . n A 1 161 HIS 161 162 162 HIS HIS A . n A 1 162 LYS 162 163 163 LYS LYS A . n A 1 163 LYS 163 164 164 LYS LYS A . n A 1 164 TRP 164 165 165 TRP TRP A . n A 1 165 ALA 165 166 166 ALA ALA A . n A 1 166 THR 166 167 167 THR THR A . n A 1 167 GLU 167 168 168 GLU GLU A . n A 1 168 ASN 168 169 169 ASN ASN A . n A 1 169 ALA 169 170 170 ALA ALA A . n A 1 170 PHE 170 171 171 PHE PHE A . n A 1 171 VAL 171 172 172 VAL VAL A . n A 1 172 LEU 172 173 173 LEU LEU A . n A 1 173 GLN 173 174 174 GLN GLN A . n A 1 174 TYR 174 175 175 TYR TYR A . n A 1 175 HIS 175 176 176 HIS HIS A . n A 1 176 MET 176 177 177 MET MET A . n A 1 177 THR 177 178 178 THR THR A . n A 1 178 PRO 178 179 179 PRO PRO A . n A 1 179 ASP 179 180 180 ASP ASP A . n A 1 180 ILE 180 181 181 ILE ILE A . n A 1 181 THR 181 182 182 THR THR A . n A 1 182 PRO 182 183 183 PRO PRO A . n A 1 183 TYR 183 184 184 TYR TYR A . n A 1 184 ILE 184 185 185 ILE ILE A . n A 1 185 GLU 185 186 186 GLU GLU A . n A 1 186 TYR 186 187 187 TYR TYR A . n A 1 187 ASP 187 188 188 ASP ASP A . n A 1 188 TYR 188 189 189 TYR TYR A . n A 1 189 LEU 189 190 190 LEU LEU A . n A 1 190 ASP 190 191 191 ASP ASP A . n A 1 191 ARG 191 192 192 ARG ARG A . n A 1 192 GLN 192 193 193 GLN GLN A . n A 1 193 GLY 193 194 194 GLY GLY A . n A 1 194 VAL 194 195 195 VAL VAL A . n A 1 195 TYR 195 196 196 TYR TYR A . n A 1 196 ASN 196 197 197 ASN ASN A . n A 1 197 GLY 197 198 198 GLY GLY A . n A 1 198 ARG 198 199 199 ARG ARG A . n A 1 199 ASP 199 200 200 ASP ASP A . n A 1 200 ASN 200 201 201 ASN ASN A . n A 1 201 LEU 201 202 202 LEU LEU A . n A 1 202 SER 202 203 203 SER SER A . n A 1 203 GLU 203 204 204 GLU GLU A . n A 1 204 ASN 204 205 205 ASN ASN A . n A 1 205 SER 205 206 206 SER SER A . n A 1 206 TYR 206 207 207 TYR TYR A . n A 1 207 ARG 207 208 208 ARG ARG A . n A 1 208 ILE 208 209 209 ILE ILE A . n A 1 209 GLY 209 210 210 GLY GLY A . n A 1 210 VAL 210 211 211 VAL VAL A . n A 1 211 SER 211 212 212 SER SER A . n A 1 212 PHE 212 213 213 PHE PHE A . n A 1 213 LYS 213 214 214 LYS LYS A . n A 1 214 LEU 214 215 215 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EPE 1 1216 1216 EPE EPE A . C 2 EPE 1 1217 1217 EPE EPE A . D 3 PO4 1 1218 1218 PO4 PO4 A . E 4 OCT 1 1219 1219 OCT OCT A . F 4 OCT 1 1220 1220 OCT OCT A . G 4 OCT 1 1221 1221 OCT OCT A . H 4 OCT 1 1222 1222 OCT OCT A . I 5 HOH 1 2001 2001 HOH HOH A . I 5 HOH 2 2002 2002 HOH HOH A . I 5 HOH 3 2003 2003 HOH HOH A . I 5 HOH 4 2004 2004 HOH HOH A . I 5 HOH 5 2005 2005 HOH HOH A . I 5 HOH 6 2006 2006 HOH HOH A . I 5 HOH 7 2007 2007 HOH HOH A . I 5 HOH 8 2008 2008 HOH HOH A . I 5 HOH 9 2009 2009 HOH HOH A . I 5 HOH 10 2010 2010 HOH HOH A . I 5 HOH 11 2011 2011 HOH HOH A . I 5 HOH 12 2012 2012 HOH HOH A . I 5 HOH 13 2013 2013 HOH HOH A . I 5 HOH 14 2014 2014 HOH HOH A . I 5 HOH 15 2015 2015 HOH HOH A . I 5 HOH 16 2016 2016 HOH HOH A . I 5 HOH 17 2017 2017 HOH HOH A . I 5 HOH 18 2018 2018 HOH HOH A . I 5 HOH 19 2019 2019 HOH HOH A . I 5 HOH 20 2020 2020 HOH HOH A . I 5 HOH 21 2021 2021 HOH HOH A . I 5 HOH 22 2022 2022 HOH HOH A . I 5 HOH 23 2023 2023 HOH HOH A . I 5 HOH 24 2024 2024 HOH HOH A . I 5 HOH 25 2025 2025 HOH HOH A . I 5 HOH 26 2026 2026 HOH HOH A . I 5 HOH 27 2027 2027 HOH HOH A . I 5 HOH 28 2028 2028 HOH HOH A . I 5 HOH 29 2029 2029 HOH HOH A . I 5 HOH 30 2030 2030 HOH HOH A . I 5 HOH 31 2031 2031 HOH HOH A . I 5 HOH 32 2032 2032 HOH HOH A . I 5 HOH 33 2033 2033 HOH HOH A . I 5 HOH 34 2034 2034 HOH HOH A . I 5 HOH 35 2035 2035 HOH HOH A . I 5 HOH 36 2036 2036 HOH HOH A . I 5 HOH 37 2037 2037 HOH HOH A . I 5 HOH 38 2038 2038 HOH HOH A . I 5 HOH 39 2039 2039 HOH HOH A . I 5 HOH 40 2040 2040 HOH HOH A . I 5 HOH 41 2041 2041 HOH HOH A . I 5 HOH 42 2042 2042 HOH HOH A . I 5 HOH 43 2043 2043 HOH HOH A . I 5 HOH 44 2044 2044 HOH HOH A . I 5 HOH 45 2045 2045 HOH HOH A . I 5 HOH 46 2046 2046 HOH HOH A . I 5 HOH 47 2047 2047 HOH HOH A . I 5 HOH 48 2048 2048 HOH HOH A . I 5 HOH 49 2049 2049 HOH HOH A . I 5 HOH 50 2050 2050 HOH HOH A . I 5 HOH 51 2051 2051 HOH HOH A . I 5 HOH 52 2052 2052 HOH HOH A . I 5 HOH 53 2053 2053 HOH HOH A . I 5 HOH 54 2054 2054 HOH HOH A . I 5 HOH 55 2055 2055 HOH HOH A . I 5 HOH 56 2056 2056 HOH HOH A . I 5 HOH 57 2057 2057 HOH HOH A . I 5 HOH 58 2058 2058 HOH HOH A . I 5 HOH 59 2059 2059 HOH HOH A . I 5 HOH 60 2060 2060 HOH HOH A . I 5 HOH 61 2061 2061 HOH HOH A . I 5 HOH 62 2062 2062 HOH HOH A . I 5 HOH 63 2063 2063 HOH HOH A . I 5 HOH 64 2064 2064 HOH HOH A . I 5 HOH 65 2065 2065 HOH HOH A . I 5 HOH 66 2066 2066 HOH HOH A . I 5 HOH 67 2067 2067 HOH HOH A . I 5 HOH 68 2068 2068 HOH HOH A . I 5 HOH 69 2069 2069 HOH HOH A . I 5 HOH 70 2070 2070 HOH HOH A . I 5 HOH 71 2071 2071 HOH HOH A . I 5 HOH 72 2072 2072 HOH HOH A . I 5 HOH 73 2073 2073 HOH HOH A . I 5 HOH 74 2074 2074 HOH HOH A . I 5 HOH 75 2075 2075 HOH HOH A . I 5 HOH 76 2076 2076 HOH HOH A . I 5 HOH 77 2077 2077 HOH HOH A . I 5 HOH 78 2078 2078 HOH HOH A . I 5 HOH 79 2079 2079 HOH HOH A . I 5 HOH 80 2080 2080 HOH HOH A . I 5 HOH 81 2081 2081 HOH HOH A . I 5 HOH 82 2082 2082 HOH HOH A . I 5 HOH 83 2083 2083 HOH HOH A . I 5 HOH 84 2084 2084 HOH HOH A . I 5 HOH 85 2085 2085 HOH HOH A . I 5 HOH 86 2086 2086 HOH HOH A . I 5 HOH 87 2087 2087 HOH HOH A . I 5 HOH 88 2088 2088 HOH HOH A . I 5 HOH 89 2089 2089 HOH HOH A . I 5 HOH 90 2090 2090 HOH HOH A . I 5 HOH 91 2091 2091 HOH HOH A . I 5 HOH 92 2092 2092 HOH HOH A . I 5 HOH 93 2093 2093 HOH HOH A . I 5 HOH 94 2094 2094 HOH HOH A . I 5 HOH 95 2095 2095 HOH HOH A . I 5 HOH 96 2096 2096 HOH HOH A . I 5 HOH 97 2097 2097 HOH HOH A . I 5 HOH 98 2098 2098 HOH HOH A . I 5 HOH 99 2099 2099 HOH HOH A . I 5 HOH 100 2100 2100 HOH HOH A . I 5 HOH 101 2101 2101 HOH HOH A . I 5 HOH 102 2102 2102 HOH HOH A . I 5 HOH 103 2103 2103 HOH HOH A . I 5 HOH 104 2104 2104 HOH HOH A . I 5 HOH 105 2105 2105 HOH HOH A . I 5 HOH 106 2106 2106 HOH HOH A . I 5 HOH 107 2107 2107 HOH HOH A . I 5 HOH 108 2108 2108 HOH HOH A . I 5 HOH 109 2109 2109 HOH HOH A . I 5 HOH 110 2110 2110 HOH HOH A . I 5 HOH 111 2111 2111 HOH HOH A . I 5 HOH 112 2112 2112 HOH HOH A . I 5 HOH 113 2113 2113 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-10-13 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2019-03-06 4 'Structure model' 1 3 2019-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Experimental preparation' 5 3 'Structure model' Other 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Experimental preparation' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' exptl_crystal_grow 2 3 'Structure model' pdbx_database_proc 3 3 'Structure model' pdbx_database_status 4 4 'Structure model' database_PDB_rev 5 4 'Structure model' database_PDB_rev_record 6 4 'Structure model' exptl_crystal_grow # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_exptl_crystal_grow.method' 2 3 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 4 'Structure model' '_exptl_crystal_grow.temp' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 3.9690 _pdbx_refine_tls.origin_y -24.0900 _pdbx_refine_tls.origin_z -18.5620 _pdbx_refine_tls.T[1][1] 0.0208 _pdbx_refine_tls.T[2][2] 0.0036 _pdbx_refine_tls.T[3][3] 0.0129 _pdbx_refine_tls.T[1][2] 0.0052 _pdbx_refine_tls.T[1][3] 0.0133 _pdbx_refine_tls.T[2][3] 0.0008 _pdbx_refine_tls.L[1][1] 0.5485 _pdbx_refine_tls.L[2][2] 0.6145 _pdbx_refine_tls.L[3][3] 0.5347 _pdbx_refine_tls.L[1][2] 0.0332 _pdbx_refine_tls.L[1][3] 0.0836 _pdbx_refine_tls.L[2][3] -0.1216 _pdbx_refine_tls.S[1][1] 0.0445 _pdbx_refine_tls.S[1][2] -0.0141 _pdbx_refine_tls.S[1][3] 0.0723 _pdbx_refine_tls.S[2][1] 0.0272 _pdbx_refine_tls.S[2][2] -0.0139 _pdbx_refine_tls.S[2][3] 0.0179 _pdbx_refine_tls.S[3][1] -0.0874 _pdbx_refine_tls.S[3][2] -0.0377 _pdbx_refine_tls.S[3][3] -0.0306 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 2 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 215 _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.5.0088 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 PHASER phasing . ? 4 # _pdbx_database_remark.id 700 _pdbx_database_remark.text ; SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 14-STRANDED BARREL THIS IS REPRESENTED BY A 15-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. ; # _pdbx_entry_details.entry_id 2WJR _pdbx_entry_details.compound_details 'ENGINEERED RESIDUE IN CHAIN A, THR 25 TO ALA' _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;N-OCTANE (OCT): OCT ARE INCOMPLETE MODELS OF DETERGENT MOLECULES ; _pdbx_entry_details.sequence_details ;FOR CLONING PURPOSE, A1 HAS BEEN DELETED AND T2 HAS BEEN MUTATED INTO A2 ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 66 ? ? -155.42 -159.42 2 1 ASN A 155 ? ? -115.07 -167.41 3 1 ASP A 191 ? ? 67.41 -170.46 4 1 ASP A 200 ? ? -109.02 -165.05 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER 11 ? OG ? A SER 10 OG 2 1 Y 1 A MET 34 ? SD ? A MET 33 SD 3 1 Y 1 A MET 34 ? CE ? A MET 33 CE 4 1 Y 1 A LYS 64 ? CE ? A LYS 63 CE 5 1 Y 1 A LYS 64 ? NZ ? A LYS 63 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS 43 ? A HIS 42 2 1 Y 1 A ASP 44 ? A ASP 43 3 1 Y 1 A ASN 45 ? A ASN 44 4 1 Y 1 A LYS 46 ? A LYS 45 5 1 Y 1 A LYS 47 ? A LYS 46 6 1 Y 1 A GLU 48 ? A GLU 47 7 1 Y 1 A ASN 49 ? A ASN 48 8 1 Y 1 A ALA 50 ? A ALA 49 9 1 Y 1 A ALA 51 ? A ALA 50 10 1 Y 1 A LEU 52 ? A LEU 51 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' EPE 3 'PHOSPHATE ION' PO4 4 N-OCTANE OCT 5 water HOH #