HEADER HYDROLASE 03-JUN-09 2WK0 TITLE CRYSTAL STRUCTURE OF THE CLASS A BETA-LACTAMASE BS3 INHIBITED BY 6- TITLE 2 BETA-IODOPENICILLANATE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.2.6 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS LICHENIFORMIS; SOURCE 3 ORGANISM_TAXID: 1402; SOURCE 4 STRAIN: BS3 KEYWDS HYDROLASE, BETA- LACTAMASE, IODOPENICILLANATE, ANTIBIOTIC RESISTANCE, KEYWDS 2 BACILLUS LICHENIFORMIS EXPDTA X-RAY DIFFRACTION AUTHOR E.SAUVAGE,A.ZERVOSEN,G.DIVE,R.HERMAN,F.KERFF,A.AMOROSO,E.FONZE, AUTHOR 2 R.F.PRATT,A.LUXEN,P.CHARLIER REVDAT 4 23-OCT-24 2WK0 1 REMARK REVDAT 3 13-DEC-23 2WK0 1 REMARK LINK REVDAT 2 13-JUL-11 2WK0 1 VERSN REVDAT 1 01-DEC-09 2WK0 0 JRNL AUTH E.SAUVAGE,A.ZERVOSEN,G.DIVE,R.HERMAN,A.AMOROSO,B.JORIS, JRNL AUTH 2 E.FONZE,R.F.PRATT,A.LUXEN,P.CHARLIER,F.KERFF JRNL TITL STRUCTURAL BASIS OF THE INHIBITION OF CLASS A JRNL TITL 2 BETA-LACTAMASES AND PENICILLIN-BINDING PROTEINS BY JRNL TITL 3 6-BETA-IODOPENICILLANATE. JRNL REF J.AM.CHEM.SOC. V. 131 15262 2009 JRNL REFN ISSN 0002-7863 JRNL PMID 19919161 JRNL DOI 10.1021/JA9051526 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 68715 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3657 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4984 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 261 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3990 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 364 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.094 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.090 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.286 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4104 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5553 ; 1.313 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 508 ; 5.768 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 186 ;34.992 ;25.161 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 740 ;14.289 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;16.075 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 640 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3058 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2065 ; 0.196 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2886 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 309 ; 0.095 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 48 ; 0.232 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.366 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2621 ; 0.507 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4108 ; 0.837 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1653 ; 1.685 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1445 ; 2.429 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 63 REMARK 3 ORIGIN FOR THE GROUP (A): 34.4210 -3.3450 -0.2620 REMARK 3 T TENSOR REMARK 3 T11: 0.0102 T22: 0.0529 REMARK 3 T33: 0.0343 T12: -0.0541 REMARK 3 T13: -0.0639 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 1.9376 L22: 1.4716 REMARK 3 L33: 1.9445 L12: -0.8630 REMARK 3 L13: -1.2842 L23: 0.3525 REMARK 3 S TENSOR REMARK 3 S11: -0.0464 S12: -0.2264 S13: 0.0440 REMARK 3 S21: 0.3368 S22: -0.0647 S23: -0.2963 REMARK 3 S31: -0.1550 S32: 0.3326 S33: 0.1111 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 64 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): 13.4830 -11.1780 -19.2860 REMARK 3 T TENSOR REMARK 3 T11: 0.0325 T22: 0.0057 REMARK 3 T33: 0.0466 T12: -0.0065 REMARK 3 T13: -0.0268 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 1.1574 L22: 1.6490 REMARK 3 L33: 1.2574 L12: -0.1586 REMARK 3 L13: 0.3469 L23: -0.0511 REMARK 3 S TENSOR REMARK 3 S11: 0.0184 S12: 0.0805 S13: -0.0434 REMARK 3 S21: -0.1777 S22: 0.0120 S23: 0.2189 REMARK 3 S31: 0.0708 S32: -0.0947 S33: -0.0304 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 158 A 167 REMARK 3 ORIGIN FOR THE GROUP (A): 20.6530 -0.2910 -19.5320 REMARK 3 T TENSOR REMARK 3 T11: 0.0280 T22: 0.0430 REMARK 3 T33: 0.0609 T12: -0.0208 REMARK 3 T13: 0.0067 T23: 0.0188 REMARK 3 L TENSOR REMARK 3 L11: 0.4008 L22: 4.9985 REMARK 3 L33: 5.7781 L12: -0.5262 REMARK 3 L13: 0.7529 L23: 2.3563 REMARK 3 S TENSOR REMARK 3 S11: -0.0658 S12: -0.0297 S13: 0.1338 REMARK 3 S21: -0.0093 S22: 0.0488 S23: 0.0356 REMARK 3 S31: -0.1452 S32: 0.0962 S33: 0.0171 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 168 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): 20.6620 -2.0620 -10.7180 REMARK 3 T TENSOR REMARK 3 T11: 0.0672 T22: 0.0280 REMARK 3 T33: 0.0704 T12: 0.0104 REMARK 3 T13: -0.0170 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 1.7281 L22: 1.4696 REMARK 3 L33: 1.9742 L12: 0.3684 REMARK 3 L13: -0.0111 L23: -0.4927 REMARK 3 S TENSOR REMARK 3 S11: -0.0041 S12: -0.0301 S13: 0.1210 REMARK 3 S21: 0.1090 S22: -0.0097 S23: -0.0168 REMARK 3 S31: -0.1259 S32: 0.0419 S33: 0.0138 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 202 A 217 REMARK 3 ORIGIN FOR THE GROUP (A): 13.7100 -16.6310 -6.4340 REMARK 3 T TENSOR REMARK 3 T11: 0.0426 T22: 0.0076 REMARK 3 T33: 0.0325 T12: -0.0195 REMARK 3 T13: -0.0096 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 9.8263 L22: 3.8194 REMARK 3 L33: 2.2724 L12: -4.2913 REMARK 3 L13: -2.3238 L23: 0.8006 REMARK 3 S TENSOR REMARK 3 S11: -0.1573 S12: -0.2065 S13: -0.3453 REMARK 3 S21: 0.1498 S22: 0.0936 S23: 0.3280 REMARK 3 S31: 0.1485 S32: -0.2268 S33: 0.0637 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 218 A 290 REMARK 3 ORIGIN FOR THE GROUP (A): 30.2050 -12.0730 -4.6550 REMARK 3 T TENSOR REMARK 3 T11: 0.0363 T22: 0.0368 REMARK 3 T33: 0.0448 T12: -0.0017 REMARK 3 T13: -0.0302 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 2.6252 L22: 1.4792 REMARK 3 L33: 1.4561 L12: 0.1019 REMARK 3 L13: -0.3786 L23: -0.3192 REMARK 3 S TENSOR REMARK 3 S11: 0.0242 S12: -0.1792 S13: -0.0899 REMARK 3 S21: 0.2330 S22: -0.0469 S23: -0.1580 REMARK 3 S31: 0.0260 S32: 0.1802 S33: 0.0227 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 31 B 81 REMARK 3 ORIGIN FOR THE GROUP (A): 22.8610 10.1650 16.4760 REMARK 3 T TENSOR REMARK 3 T11: 0.0482 T22: 0.0181 REMARK 3 T33: 0.0327 T12: -0.0362 REMARK 3 T13: 0.0191 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.6292 L22: 2.3180 REMARK 3 L33: 1.3456 L12: -0.3779 REMARK 3 L13: 0.8828 L23: -0.0572 REMARK 3 S TENSOR REMARK 3 S11: -0.0942 S12: 0.1209 S13: -0.0513 REMARK 3 S21: -0.2325 S22: 0.0974 S23: -0.1130 REMARK 3 S31: -0.0241 S32: 0.0653 S33: -0.0032 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 82 B 120 REMARK 3 ORIGIN FOR THE GROUP (A): -3.1690 7.7010 31.4270 REMARK 3 T TENSOR REMARK 3 T11: -0.1169 T22: 0.1659 REMARK 3 T33: 0.4178 T12: 0.1355 REMARK 3 T13: 0.1097 T23: 0.3711 REMARK 3 L TENSOR REMARK 3 L11: 5.0041 L22: 6.6642 REMARK 3 L33: 5.4709 L12: 3.8520 REMARK 3 L13: -0.2090 L23: 2.1955 REMARK 3 S TENSOR REMARK 3 S11: 0.0336 S12: -0.0187 S13: 0.3424 REMARK 3 S21: 0.5611 S22: 0.4262 S23: 1.5399 REMARK 3 S31: 0.1589 S32: -0.9668 S33: -0.4599 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 121 B 156 REMARK 3 ORIGIN FOR THE GROUP (A): 6.6850 2.5660 27.2090 REMARK 3 T TENSOR REMARK 3 T11: -0.1308 T22: 0.0706 REMARK 3 T33: 0.1707 T12: -0.0370 REMARK 3 T13: -0.0030 T23: 0.1279 REMARK 3 L TENSOR REMARK 3 L11: 2.0205 L22: 4.1011 REMARK 3 L33: 3.5874 L12: 0.6111 REMARK 3 L13: -0.8760 L23: -1.5398 REMARK 3 S TENSOR REMARK 3 S11: -0.0589 S12: -0.0683 S13: -0.1710 REMARK 3 S21: 0.0721 S22: 0.4825 S23: 0.6220 REMARK 3 S31: 0.1671 S32: -0.6822 S33: -0.4236 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 157 B 194 REMARK 3 ORIGIN FOR THE GROUP (A): 18.4820 3.1840 25.9300 REMARK 3 T TENSOR REMARK 3 T11: 0.0339 T22: -0.0066 REMARK 3 T33: 0.0421 T12: -0.0220 REMARK 3 T13: 0.0119 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 1.6029 L22: 2.3747 REMARK 3 L33: 3.0305 L12: 0.2625 REMARK 3 L13: 0.1323 L23: -1.6429 REMARK 3 S TENSOR REMARK 3 S11: -0.0401 S12: -0.0858 S13: -0.1589 REMARK 3 S21: -0.0338 S22: 0.1417 S23: -0.0268 REMARK 3 S31: 0.0260 S32: -0.0438 S33: -0.1017 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 195 B 265 REMARK 3 ORIGIN FOR THE GROUP (A): 10.7760 12.0300 13.8230 REMARK 3 T TENSOR REMARK 3 T11: 0.0106 T22: 0.0343 REMARK 3 T33: 0.0429 T12: -0.0457 REMARK 3 T13: -0.0474 T23: 0.0477 REMARK 3 L TENSOR REMARK 3 L11: 1.8792 L22: 3.2646 REMARK 3 L33: 2.9678 L12: 0.3514 REMARK 3 L13: 0.7104 L23: -1.0367 REMARK 3 S TENSOR REMARK 3 S11: -0.0799 S12: 0.1988 S13: -0.0013 REMARK 3 S21: -0.3991 S22: 0.2777 S23: 0.5039 REMARK 3 S31: 0.1448 S32: -0.3717 S33: -0.1979 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 266 B 290 REMARK 3 ORIGIN FOR THE GROUP (A): 24.1610 19.7060 19.6640 REMARK 3 T TENSOR REMARK 3 T11: 0.0697 T22: 0.0055 REMARK 3 T33: 0.0630 T12: -0.0317 REMARK 3 T13: -0.0058 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 2.0128 L22: 3.9453 REMARK 3 L33: 5.0357 L12: 0.6969 REMARK 3 L13: -0.2753 L23: -1.3427 REMARK 3 S TENSOR REMARK 3 S11: -0.0699 S12: 0.0423 S13: 0.1063 REMARK 3 S21: 0.0035 S22: 0.0698 S23: -0.0786 REMARK 3 S31: -0.2732 S32: 0.0361 S33: 0.0001 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2WK0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1290040031. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-00 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 3.4 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LURE REMARK 200 BEAMLINE : DW32 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9474 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72436 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 27.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 3B3X REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 3.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 52.23950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 26 REMARK 465 THR A 27 REMARK 465 GLU A 28 REMARK 465 MET A 29 REMARK 465 LYS A 30 REMARK 465 MET A 292 REMARK 465 ASN A 293 REMARK 465 GLY A 294 REMARK 465 LYS A 295 REMARK 465 LYS B 26 REMARK 465 THR B 27 REMARK 465 GLU B 28 REMARK 465 MET B 29 REMARK 465 LYS B 30 REMARK 465 MET B 292 REMARK 465 ASN B 293 REMARK 465 GLY B 294 REMARK 465 LYS B 295 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 291 CA C O CB CG OD1 ND2 REMARK 470 ASN B 291 CA C O CB CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2188 O HOH A 2189 1.58 REMARK 500 O HOH B 2080 O HOH B 2082 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 69 -139.68 49.93 REMARK 500 VAL A 103 -130.06 -101.93 REMARK 500 LEU A 220 -122.15 -112.10 REMARK 500 ALA B 69 -138.61 47.47 REMARK 500 VAL B 103 -135.95 -105.14 REMARK 500 GLU B 196 -154.68 -92.97 REMARK 500 LEU B 220 -121.54 -110.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BIY A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BIY B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT B 1292 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1292 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 1293 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 1294 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 1295 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH B 1293 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1W7F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CLASS A BETA- LACTAMASE BS3 INHIBITED WITH REMARK 900 ISOCITRATE DBREF 2WK0 A 26 295 UNP P94458 P94458_BACLI 1 265 DBREF 2WK0 B 26 295 UNP P94458 P94458_BACLI 1 265 SEQRES 1 A 265 LYS THR GLU MET LYS ASP ASP PHE ALA LYS LEU GLU GLU SEQRES 2 A 265 GLN PHE ASP ALA LYS LEU GLY ILE PHE ALA LEU ASP THR SEQRES 3 A 265 GLY THR ASN ARG THR VAL THR TYR ARG PRO ASP GLU ARG SEQRES 4 A 265 PHE ALA PHE ALA SER THR ILE LYS ALA LEU THR VAL GLY SEQRES 5 A 265 VAL LEU LEU GLN GLN LYS SER ILE GLU ASP LEU ASN GLN SEQRES 6 A 265 ARG ILE THR TYR THR ARG ASP ASP LEU VAL ASN TYR ASN SEQRES 7 A 265 PRO ILE THR GLU LYS HIS VAL ASP THR GLY MET THR LEU SEQRES 8 A 265 LYS GLU LEU ALA ASP ALA SER LEU ARG TYR SER ASP ASN SEQRES 9 A 265 THR ALA GLN ASN LEU ILE LEU LYS GLN ILE GLY GLY PRO SEQRES 10 A 265 GLU SER LEU LYS LYS GLU LEU ARG LYS ILE GLY ASP GLU SEQRES 11 A 265 VAL THR ASN PRO GLU ARG PHE GLU PRO GLU LEU ASN GLU SEQRES 12 A 265 VAL ASN PRO GLY GLU THR GLN ASP THR SER THR ALA ARG SEQRES 13 A 265 ALA LEU ALA THR SER LEU GLN ALA PHE ALA LEU GLU ASP SEQRES 14 A 265 LYS LEU PRO SER GLU LYS ARG GLU LEU LEU ILE ASP TRP SEQRES 15 A 265 MET LYS ARG ASN THR THR GLY ASP ALA LEU ILE ARG ALA SEQRES 16 A 265 GLY VAL PRO GLU GLY TRP GLU VAL ALA ASP LYS THR GLY SEQRES 17 A 265 ALA GLY SER TYR GLY THR ARG ASN ASP ILE ALA ILE ILE SEQRES 18 A 265 TRP PRO PRO LYS GLY ASP PRO VAL VAL LEU ALA VAL LEU SEQRES 19 A 265 SER SER ARG ASP LYS LYS ASP ALA LYS TYR ASP ASP LYS SEQRES 20 A 265 LEU ILE ALA GLU ALA THR LYS VAL VAL VAL LYS ALA LEU SEQRES 21 A 265 ASN MET ASN GLY LYS SEQRES 1 B 265 LYS THR GLU MET LYS ASP ASP PHE ALA LYS LEU GLU GLU SEQRES 2 B 265 GLN PHE ASP ALA LYS LEU GLY ILE PHE ALA LEU ASP THR SEQRES 3 B 265 GLY THR ASN ARG THR VAL THR TYR ARG PRO ASP GLU ARG SEQRES 4 B 265 PHE ALA PHE ALA SER THR ILE LYS ALA LEU THR VAL GLY SEQRES 5 B 265 VAL LEU LEU GLN GLN LYS SER ILE GLU ASP LEU ASN GLN SEQRES 6 B 265 ARG ILE THR TYR THR ARG ASP ASP LEU VAL ASN TYR ASN SEQRES 7 B 265 PRO ILE THR GLU LYS HIS VAL ASP THR GLY MET THR LEU SEQRES 8 B 265 LYS GLU LEU ALA ASP ALA SER LEU ARG TYR SER ASP ASN SEQRES 9 B 265 THR ALA GLN ASN LEU ILE LEU LYS GLN ILE GLY GLY PRO SEQRES 10 B 265 GLU SER LEU LYS LYS GLU LEU ARG LYS ILE GLY ASP GLU SEQRES 11 B 265 VAL THR ASN PRO GLU ARG PHE GLU PRO GLU LEU ASN GLU SEQRES 12 B 265 VAL ASN PRO GLY GLU THR GLN ASP THR SER THR ALA ARG SEQRES 13 B 265 ALA LEU ALA THR SER LEU GLN ALA PHE ALA LEU GLU ASP SEQRES 14 B 265 LYS LEU PRO SER GLU LYS ARG GLU LEU LEU ILE ASP TRP SEQRES 15 B 265 MET LYS ARG ASN THR THR GLY ASP ALA LEU ILE ARG ALA SEQRES 16 B 265 GLY VAL PRO GLU GLY TRP GLU VAL ALA ASP LYS THR GLY SEQRES 17 B 265 ALA GLY SER TYR GLY THR ARG ASN ASP ILE ALA ILE ILE SEQRES 18 B 265 TRP PRO PRO LYS GLY ASP PRO VAL VAL LEU ALA VAL LEU SEQRES 19 B 265 SER SER ARG ASP LYS LYS ASP ALA LYS TYR ASP ASP LYS SEQRES 20 B 265 LEU ILE ALA GLU ALA THR LYS VAL VAL VAL LYS ALA LEU SEQRES 21 B 265 ASN MET ASN GLY LYS HET BIY A 300 13 HET CL A 301 1 HET SO4 A1292 5 HET EOH A1293 3 HET EOH A1294 3 HET EOH A1295 3 HET BIY B 300 13 HET CL B 301 1 HET CIT B1292 13 HET EOH B1293 3 HETNAM BIY (3S)-2,2-DIMETHYL-3,4-DIHYDRO-2H-1,4-THIAZINE-3,6- HETNAM 2 BIY DICARBOXYLIC ACID HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM EOH ETHANOL HETNAM CIT CITRIC ACID FORMUL 3 BIY 2(C8 H11 N O4 S) FORMUL 4 CL 2(CL 1-) FORMUL 5 SO4 O4 S 2- FORMUL 6 EOH 4(C2 H6 O) FORMUL 11 CIT C6 H8 O7 FORMUL 13 HOH *364(H2 O) HELIX 1 1 ASP A 31 ASP A 41 1 11 HELIX 2 2 THR A 71 LYS A 86 1 14 HELIX 3 3 ILE A 88 ASN A 92 5 5 HELIX 4 4 ILE A 108 HIS A 112 5 5 HELIX 5 5 LEU A 119 SER A 130 1 12 HELIX 6 6 ASP A 131 ILE A 142 1 12 HELIX 7 7 GLY A 143 ILE A 155 1 13 HELIX 8 8 PRO A 167 GLU A 171 5 5 HELIX 9 9 ALA A 183 LEU A 195 1 13 HELIX 10 10 PRO A 200 ARG A 213 1 14 HELIX 11 11 LEU A 220 VAL A 225 5 6 HELIX 12 12 ASP A 276 LEU A 290 1 15 HELIX 13 13 ASP B 31 ASP B 41 1 11 HELIX 14 14 THR B 71 LYS B 86 1 14 HELIX 15 15 GLU B 89 ASN B 92 5 4 HELIX 16 16 THR B 98 LEU B 102 5 5 HELIX 17 17 ILE B 108 HIS B 112 5 5 HELIX 18 18 LEU B 119 SER B 130 1 12 HELIX 19 19 ASP B 131 ILE B 142 1 12 HELIX 20 20 GLY B 143 ILE B 155 1 13 HELIX 21 21 PRO B 167 GLU B 171 5 5 HELIX 22 22 THR B 182 LEU B 195 1 14 HELIX 23 23 PRO B 200 ARG B 213 1 14 HELIX 24 24 LEU B 220 VAL B 225 5 6 HELIX 25 25 ASP B 275 LEU B 290 1 16 SHEET 1 AA 5 THR A 56 TYR A 60 0 SHEET 2 AA 5 LYS A 43 ASP A 50 -1 O ILE A 46 N TYR A 60 SHEET 3 AA 5 VAL A 259 SER A 266 -1 O VAL A 260 N LEU A 49 SHEET 4 AA 5 THR A 243 TRP A 251 -1 N ARG A 244 O SER A 265 SHEET 5 AA 5 GLU A 230 GLY A 238 -1 O GLU A 230 N TRP A 251 SHEET 1 AB 2 ARG A 65 ALA A 67 0 SHEET 2 AB 2 THR A 180 THR A 182 -1 O SER A 181 N PHE A 66 SHEET 1 AC 2 ARG A 94 ILE A 95 0 SHEET 2 AC 2 MET A 117 THR A 118 -1 O MET A 117 N ILE A 95 SHEET 1 BA 5 THR B 56 TYR B 60 0 SHEET 2 BA 5 LYS B 43 ASP B 50 -1 O ILE B 46 N TYR B 60 SHEET 3 BA 5 VAL B 259 SER B 266 -1 O VAL B 260 N LEU B 49 SHEET 4 BA 5 THR B 243 TRP B 251 -1 N ARG B 244 O SER B 265 SHEET 5 BA 5 GLU B 230 GLY B 238 -1 O GLU B 230 N TRP B 251 SHEET 1 BB 2 PHE B 66 ALA B 67 0 SHEET 2 BB 2 THR B 180 SER B 181 -1 O SER B 181 N PHE B 66 SHEET 1 BC 2 ARG B 94 ILE B 95 0 SHEET 2 BC 2 MET B 117 THR B 118 -1 O MET B 117 N ILE B 95 LINK OG SER A 70 C12 BIY A 300 1555 1555 1.37 LINK OG SER B 70 C12 BIY B 300 1555 1555 1.37 CISPEP 1 GLU A 166 PRO A 167 0 -1.31 CISPEP 2 GLU B 166 PRO B 167 0 -2.89 SITE 1 AC1 12 ALA A 69 SER A 70 ASN A 104 TYR A 105 SITE 2 AC1 12 SER A 130 ASN A 132 ASN A 170 GLY A 236 SITE 3 AC1 12 ALA A 237 CL A 301 HOH A2116 HOH A2201 SITE 1 AC2 5 SER A 70 SER A 130 LYS A 234 THR A 235 SITE 2 AC2 5 BIY A 300 SITE 1 AC3 13 ALA B 69 SER B 70 ASN B 104 TYR B 105 SITE 2 AC3 13 SER B 130 ASN B 132 ASN B 170 GLY B 236 SITE 3 AC3 13 ALA B 237 CL B 301 HOH B2076 HOH B2156 SITE 4 AC3 13 HOH B2157 SITE 1 AC4 5 SER B 70 SER B 130 LYS B 234 THR B 235 SITE 2 AC4 5 BIY B 300 SITE 1 AC5 9 ASN A 161 GLU A 163 GLU A 176 THR A 177 SITE 2 AC5 9 GLN A 178 HOH A2120 GLU B 171 ASN B 173 SITE 3 AC5 9 HOH B2158 SITE 1 AC6 8 LYS A 140 GLY A 143 GLY A 144 PHE A 165 SITE 2 AC6 8 HOH A2202 HOH A2203 LYS B 140 PHE B 165 SITE 1 AC7 2 ALA A 42 ARG A 61 SITE 1 AC8 3 ASP A 32 LYS A 35 HOH A2204 SITE 1 AC9 2 ASN A 173 GLU A 176 SITE 1 BC1 6 ARG B 65 VAL B 172 HOH B2035 HOH B2084 SITE 2 BC1 6 HOH B2120 HOH B2160 CRYST1 46.988 104.479 63.740 90.00 94.07 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021282 0.000000 0.001514 0.00000 SCALE2 0.000000 0.009571 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015728 0.00000