HEADER CYTOKINE 08-JUN-09 2WKB TITLE CRYSTAL STRUCTURE OF MACROPHAGE MIGRATION INHIBITORY FACTOR FROM TITLE 2 PLASMODIUM BERGHEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROPHAGE MIGRATION INHIBITORY FACTOR; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: RESIDUES 2-116; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: CYS2 IS MODIFIED TO CME IN ALL CHAINS DUE TO BINDING COMPND 7 TO BETA-MERCAPTOETHANOL SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM BERGHEI; SOURCE 3 ORGANISM_TAXID: 5823; SOURCE 4 STRAIN: ANKA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 STAR (DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE-70 KEYWDS CYTOKINE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.DOBSON,K.D.AUGUSTIJN,J.A.BRANNIGAN,E.J.DODSON,A.P.WATERS, AUTHOR 2 A.J.WILKINSON REVDAT 3 13-DEC-23 2WKB 1 REMARK LINK REVDAT 2 15-JUN-11 2WKB 1 JRNL REMARK DBREF SEQADV REVDAT 2 2 1 HETSYN HETATM REVDAT 1 27-OCT-09 2WKB 0 JRNL AUTH S.E.DOBSON,K.D.AUGUSTIJN,J.A.BRANNIGAN,C.SCHNICK,C.J.JANSE, JRNL AUTH 2 E.J.DODSON,A.P.WATERS,A.J.WILKINSON JRNL TITL THE CRYSTAL STRUCTURES OF MACROPHAGE MIGRATION INHIBITION JRNL TITL 2 FACTOR (MIF) FROM PLASMODIUM FALCIPARUM AND PLASMODIUM JRNL TITL 3 BERGHEI. JRNL REF PROTEIN SCI. V. 18 2578 2009 JRNL REFN ISSN 0961-8368 JRNL PMID 19827093 JRNL DOI 10.1002/PRO.263 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 68813 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3657 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4833 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.3610 REMARK 3 BIN FREE R VALUE SET COUNT : 273 REMARK 3 BIN FREE R VALUE : 0.3870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5309 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 492 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : -0.57000 REMARK 3 B33 (A**2) : 0.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.20000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.872 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5560 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7492 ; 2.039 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 694 ; 6.847 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 258 ;34.538 ;24.380 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 947 ;14.826 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;15.454 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 828 ; 0.154 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4155 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3413 ; 1.437 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5526 ; 2.577 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2147 ; 3.575 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1957 ; 5.603 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 2WKB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1290040054. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9395 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72962 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.61000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.360 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: PDB ENTRY 2OS5 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL PH 8.5, 13% PEG 6000, REMARK 280 0.2 M KSCN REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.58450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 66 REMARK 465 GLY A 67 REMARK 465 ILE A 68 REMARK 465 ASN A 69 REMARK 465 ARG A 70 REMARK 465 CYS A 102 REMARK 465 SER A 103 REMARK 465 ALA A 104 REMARK 465 GLN A 105 REMARK 465 SER A 117 REMARK 465 ARG A 118 REMARK 465 SER A 119 REMARK 465 HIS A 120 REMARK 465 HIS A 121 REMARK 465 HIS A 122 REMARK 465 HIS A 123 REMARK 465 HIS A 124 REMARK 465 HIS A 125 REMARK 465 SER B 103 REMARK 465 ALA B 104 REMARK 465 GLN B 105 REMARK 465 GLY B 116 REMARK 465 SER B 117 REMARK 465 ARG B 118 REMARK 465 SER B 119 REMARK 465 HIS B 120 REMARK 465 HIS B 121 REMARK 465 HIS B 122 REMARK 465 HIS B 123 REMARK 465 HIS B 124 REMARK 465 HIS B 125 REMARK 465 SER C 117 REMARK 465 ARG C 118 REMARK 465 SER C 119 REMARK 465 HIS C 120 REMARK 465 HIS C 121 REMARK 465 HIS C 122 REMARK 465 HIS C 123 REMARK 465 HIS C 124 REMARK 465 HIS C 125 REMARK 465 SER D 103 REMARK 465 ALA D 104 REMARK 465 GLN D 105 REMARK 465 ASN D 106 REMARK 465 SER D 117 REMARK 465 ARG D 118 REMARK 465 SER D 119 REMARK 465 HIS D 120 REMARK 465 HIS D 121 REMARK 465 HIS D 122 REMARK 465 HIS D 123 REMARK 465 HIS D 124 REMARK 465 HIS D 125 REMARK 465 ARG E 118 REMARK 465 SER E 119 REMARK 465 HIS E 120 REMARK 465 HIS E 121 REMARK 465 HIS E 122 REMARK 465 HIS E 123 REMARK 465 HIS E 124 REMARK 465 HIS E 125 REMARK 465 SER F 117 REMARK 465 ARG F 118 REMARK 465 SER F 119 REMARK 465 HIS F 120 REMARK 465 HIS F 121 REMARK 465 HIS F 122 REMARK 465 HIS F 123 REMARK 465 HIS F 124 REMARK 465 HIS F 125 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY A 116 CA C O REMARK 470 GLY B 115 CA C O REMARK 470 GLY C 116 CA C O REMARK 470 GLY D 116 CA C O REMARK 470 SER E 117 CA C O CB OG REMARK 470 GLY F 116 CA C O REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C2014 DISTANCE = 7.06 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CME): BETA REMARK 600 MERCAPTOETHANOL IS COVALENTLY BOUND TO CYS2 VIA A REMARK 600 DISULPHIDE LINKAGE REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1116 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1117 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1116 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 1116 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 1116 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E 1117 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL F 1116 DBREF 2WKB A 1 115 UNP Q4YQW0 Q4YQW0_PLABE 2 116 DBREF 2WKB B 1 115 UNP Q4YQW0 Q4YQW0_PLABE 2 116 DBREF 2WKB C 1 115 UNP Q4YQW0 Q4YQW0_PLABE 2 116 DBREF 2WKB D 1 115 UNP Q4YQW0 Q4YQW0_PLABE 2 116 DBREF 2WKB E 1 115 UNP Q4YQW0 Q4YQW0_PLABE 2 116 DBREF 2WKB F 1 115 UNP Q4YQW0 Q4YQW0_PLABE 2 116 SEQADV 2WKB GLY A 116 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB SER A 117 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB ARG A 118 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB SER A 119 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS A 120 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS A 121 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS A 122 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS A 123 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS A 124 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS A 125 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB GLY B 116 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB SER B 117 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB ARG B 118 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB SER B 119 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS B 120 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS B 121 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS B 122 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS B 123 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS B 124 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS B 125 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB GLY C 116 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB SER C 117 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB ARG C 118 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB SER C 119 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS C 120 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS C 121 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS C 122 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS C 123 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS C 124 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS C 125 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB GLY D 116 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB SER D 117 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB ARG D 118 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB SER D 119 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS D 120 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS D 121 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS D 122 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS D 123 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS D 124 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS D 125 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB GLY E 116 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB SER E 117 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB ARG E 118 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB SER E 119 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS E 120 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS E 121 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS E 122 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS E 123 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS E 124 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS E 125 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB GLY F 116 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB SER F 117 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB ARG F 118 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB SER F 119 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS F 120 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS F 121 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS F 122 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS F 123 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS F 124 UNP Q4YQW0 EXPRESSION TAG SEQADV 2WKB HIS F 125 UNP Q4YQW0 EXPRESSION TAG SEQRES 1 A 125 PRO CME CYS GLU LEU ILE THR ASN ILE SER ILE PRO ASP SEQRES 2 A 125 ASP LYS ALA GLN ASN THR LEU SER GLU ILE GLU ASP ALA SEQRES 3 A 125 ILE SER ASN ILE LEU GLY LYS PRO VAL ALA TYR ILE MET SEQRES 4 A 125 SER ASN TYR ASP TYR GLN LYS ASN LEU ARG PHE SER GLY SEQRES 5 A 125 SER ASN GLU GLY TYR CYS PHE VAL ARG LEU THR SER ILE SEQRES 6 A 125 GLY GLY ILE ASN ARG SER ASN ASN SER LEU LEU ALA ASP SEQRES 7 A 125 LYS ILE THR LYS ILE LEU SER ASN HIS LEU SER VAL LYS SEQRES 8 A 125 PRO ARG ARG VAL TYR ILE GLU PHE ARG ASP CYS SER ALA SEQRES 9 A 125 GLN ASN PHE ALA PHE SER GLY SER LEU PHE GLY GLY SER SEQRES 10 A 125 ARG SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 125 PRO CME CYS GLU LEU ILE THR ASN ILE SER ILE PRO ASP SEQRES 2 B 125 ASP LYS ALA GLN ASN THR LEU SER GLU ILE GLU ASP ALA SEQRES 3 B 125 ILE SER ASN ILE LEU GLY LYS PRO VAL ALA TYR ILE MET SEQRES 4 B 125 SER ASN TYR ASP TYR GLN LYS ASN LEU ARG PHE SER GLY SEQRES 5 B 125 SER ASN GLU GLY TYR CYS PHE VAL ARG LEU THR SER ILE SEQRES 6 B 125 GLY GLY ILE ASN ARG SER ASN ASN SER LEU LEU ALA ASP SEQRES 7 B 125 LYS ILE THR LYS ILE LEU SER ASN HIS LEU SER VAL LYS SEQRES 8 B 125 PRO ARG ARG VAL TYR ILE GLU PHE ARG ASP CYS SER ALA SEQRES 9 B 125 GLN ASN PHE ALA PHE SER GLY SER LEU PHE GLY GLY SER SEQRES 10 B 125 ARG SER HIS HIS HIS HIS HIS HIS SEQRES 1 C 125 PRO CME CYS GLU LEU ILE THR ASN ILE SER ILE PRO ASP SEQRES 2 C 125 ASP LYS ALA GLN ASN THR LEU SER GLU ILE GLU ASP ALA SEQRES 3 C 125 ILE SER ASN ILE LEU GLY LYS PRO VAL ALA TYR ILE MET SEQRES 4 C 125 SER ASN TYR ASP TYR GLN LYS ASN LEU ARG PHE SER GLY SEQRES 5 C 125 SER ASN GLU GLY TYR CYS PHE VAL ARG LEU THR SER ILE SEQRES 6 C 125 GLY GLY ILE ASN ARG SER ASN ASN SER LEU LEU ALA ASP SEQRES 7 C 125 LYS ILE THR LYS ILE LEU SER ASN HIS LEU SER VAL LYS SEQRES 8 C 125 PRO ARG ARG VAL TYR ILE GLU PHE ARG ASP CYS SER ALA SEQRES 9 C 125 GLN ASN PHE ALA PHE SER GLY SER LEU PHE GLY GLY SER SEQRES 10 C 125 ARG SER HIS HIS HIS HIS HIS HIS SEQRES 1 D 125 PRO CME CYS GLU LEU ILE THR ASN ILE SER ILE PRO ASP SEQRES 2 D 125 ASP LYS ALA GLN ASN THR LEU SER GLU ILE GLU ASP ALA SEQRES 3 D 125 ILE SER ASN ILE LEU GLY LYS PRO VAL ALA TYR ILE MET SEQRES 4 D 125 SER ASN TYR ASP TYR GLN LYS ASN LEU ARG PHE SER GLY SEQRES 5 D 125 SER ASN GLU GLY TYR CYS PHE VAL ARG LEU THR SER ILE SEQRES 6 D 125 GLY GLY ILE ASN ARG SER ASN ASN SER LEU LEU ALA ASP SEQRES 7 D 125 LYS ILE THR LYS ILE LEU SER ASN HIS LEU SER VAL LYS SEQRES 8 D 125 PRO ARG ARG VAL TYR ILE GLU PHE ARG ASP CYS SER ALA SEQRES 9 D 125 GLN ASN PHE ALA PHE SER GLY SER LEU PHE GLY GLY SER SEQRES 10 D 125 ARG SER HIS HIS HIS HIS HIS HIS SEQRES 1 E 125 PRO CME CYS GLU LEU ILE THR ASN ILE SER ILE PRO ASP SEQRES 2 E 125 ASP LYS ALA GLN ASN THR LEU SER GLU ILE GLU ASP ALA SEQRES 3 E 125 ILE SER ASN ILE LEU GLY LYS PRO VAL ALA TYR ILE MET SEQRES 4 E 125 SER ASN TYR ASP TYR GLN LYS ASN LEU ARG PHE SER GLY SEQRES 5 E 125 SER ASN GLU GLY TYR CYS PHE VAL ARG LEU THR SER ILE SEQRES 6 E 125 GLY GLY ILE ASN ARG SER ASN ASN SER LEU LEU ALA ASP SEQRES 7 E 125 LYS ILE THR LYS ILE LEU SER ASN HIS LEU SER VAL LYS SEQRES 8 E 125 PRO ARG ARG VAL TYR ILE GLU PHE ARG ASP CYS SER ALA SEQRES 9 E 125 GLN ASN PHE ALA PHE SER GLY SER LEU PHE GLY GLY SER SEQRES 10 E 125 ARG SER HIS HIS HIS HIS HIS HIS SEQRES 1 F 125 PRO CME CYS GLU LEU ILE THR ASN ILE SER ILE PRO ASP SEQRES 2 F 125 ASP LYS ALA GLN ASN THR LEU SER GLU ILE GLU ASP ALA SEQRES 3 F 125 ILE SER ASN ILE LEU GLY LYS PRO VAL ALA TYR ILE MET SEQRES 4 F 125 SER ASN TYR ASP TYR GLN LYS ASN LEU ARG PHE SER GLY SEQRES 5 F 125 SER ASN GLU GLY TYR CYS PHE VAL ARG LEU THR SER ILE SEQRES 6 F 125 GLY GLY ILE ASN ARG SER ASN ASN SER LEU LEU ALA ASP SEQRES 7 F 125 LYS ILE THR LYS ILE LEU SER ASN HIS LEU SER VAL LYS SEQRES 8 F 125 PRO ARG ARG VAL TYR ILE GLU PHE ARG ASP CYS SER ALA SEQRES 9 F 125 GLN ASN PHE ALA PHE SER GLY SER LEU PHE GLY GLY SER SEQRES 10 F 125 ARG SER HIS HIS HIS HIS HIS HIS MODRES 2WKB CME A 2 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE MODRES 2WKB CME B 2 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE MODRES 2WKB CME C 2 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE MODRES 2WKB CME D 2 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE MODRES 2WKB CME E 2 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE MODRES 2WKB CME F 2 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE HET CME A 2 10 HET CME B 2 17 HET CME C 2 17 HET CME D 2 17 HET CME E 2 17 HET CME F 2 17 HET GOL A1116 6 HET GOL A1117 6 HET GOL B1115 6 HET GOL B1116 6 HET GOL C1116 6 HET GOL D1116 6 HET GOL E1117 6 HET GOL F1116 6 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CME 6(C5 H11 N O3 S2) FORMUL 7 GOL 8(C3 H8 O3) FORMUL 15 HOH *492(H2 O) HELIX 1 1 PRO A 12 GLY A 32 1 21 HELIX 2 2 ASN A 72 SER A 89 1 18 HELIX 3 3 LYS A 91 ARG A 93 5 3 HELIX 4 4 SER A 112 PHE A 114 5 3 HELIX 5 5 PRO B 12 GLY B 32 1 21 HELIX 6 6 ASN B 72 SER B 89 1 18 HELIX 7 7 LYS B 91 ARG B 93 5 3 HELIX 8 8 SER B 112 PHE B 114 5 3 HELIX 9 9 PRO C 12 GLY C 32 1 21 HELIX 10 10 ASN C 72 SER C 89 1 18 HELIX 11 11 LYS C 91 ARG C 93 5 3 HELIX 12 12 SER C 112 PHE C 114 5 3 HELIX 13 13 PRO D 12 GLY D 32 1 21 HELIX 14 14 ASN D 69 SER D 89 1 21 HELIX 15 15 LYS D 91 ARG D 93 5 3 HELIX 16 16 SER D 112 PHE D 114 5 3 HELIX 17 17 PRO E 12 GLY E 32 1 21 HELIX 18 18 ASN E 72 SER E 89 1 18 HELIX 19 19 LYS E 91 ARG E 93 5 3 HELIX 20 20 SER E 112 PHE E 114 5 3 HELIX 21 21 PRO F 12 GLY F 32 1 21 HELIX 22 22 ASN F 72 SER F 89 1 18 HELIX 23 23 LYS F 91 ARG F 93 5 3 HELIX 24 24 CYS F 102 ALA F 104 5 3 HELIX 25 25 SER F 112 GLY F 115 5 4 SHEET 1 AA 5 TYR A 42 TYR A 44 0 SHEET 2 AA 5 CME A 2 THR A 7 1 O LEU A 5 N ASP A 43 SHEET 3 AA 5 CYS A 58 THR A 63 -1 O PHE A 59 N ILE A 6 SHEET 4 AA 5 VAL A 95 ARG A 100 1 O TYR A 96 N VAL A 60 SHEET 5 AA 5 PHE B 107 SER B 110 -1 O PHE B 107 N PHE A 99 SHEET 1 AB 2 MET A 39 SER A 40 0 SHEET 2 AB 2 ARG C 49 PHE C 50 -1 O ARG C 49 N SER A 40 SHEET 1 AC 2 ARG A 49 PHE A 50 0 SHEET 2 AC 2 MET B 39 SER B 40 -1 O SER B 40 N ARG A 49 SHEET 1 AD 5 PHE A 107 SER A 110 0 SHEET 2 AD 5 VAL C 95 ARG C 100 -1 O ILE C 97 N PHE A 109 SHEET 3 AD 5 CYS C 58 THR C 63 1 O CYS C 58 N TYR C 96 SHEET 4 AD 5 CME C 2 THR C 7 -1 O CME C 2 N THR C 63 SHEET 5 AD 5 TYR C 42 TYR C 44 1 O ASP C 43 N THR C 7 SHEET 1 BA 5 TYR B 42 TYR B 44 0 SHEET 2 BA 5 CME B 2 THR B 7 1 O LEU B 5 N ASP B 43 SHEET 3 BA 5 CYS B 58 THR B 63 -1 O PHE B 59 N ILE B 6 SHEET 4 BA 5 VAL B 95 ARG B 100 1 O TYR B 96 N VAL B 60 SHEET 5 BA 5 ASN C 106 SER C 110 -1 O PHE C 107 N PHE B 99 SHEET 1 BB 2 ARG B 49 PHE B 50 0 SHEET 2 BB 2 MET C 39 SER C 40 -1 O SER C 40 N ARG B 49 SHEET 1 DA 5 TYR D 42 TYR D 44 0 SHEET 2 DA 5 CME D 2 THR D 7 1 O LEU D 5 N ASP D 43 SHEET 3 DA 5 CYS D 58 THR D 63 -1 O PHE D 59 N ILE D 6 SHEET 4 DA 5 VAL D 95 ARG D 100 1 O TYR D 96 N VAL D 60 SHEET 5 DA 5 ALA E 108 SER E 110 -1 O PHE E 109 N ILE D 97 SHEET 1 DB 2 MET D 39 SER D 40 0 SHEET 2 DB 2 ARG F 49 PHE F 50 -1 O ARG F 49 N SER D 40 SHEET 1 DC 2 ARG D 49 PHE D 50 0 SHEET 2 DC 2 MET E 39 SER E 40 -1 O SER E 40 N ARG D 49 SHEET 1 DD 5 ALA D 108 SER D 110 0 SHEET 2 DD 5 VAL F 95 ARG F 100 -1 O ILE F 97 N PHE D 109 SHEET 3 DD 5 CYS F 58 THR F 63 1 O CYS F 58 N TYR F 96 SHEET 4 DD 5 CME F 2 THR F 7 -1 O CME F 2 N THR F 63 SHEET 5 DD 5 TYR F 42 TYR F 44 1 O ASP F 43 N THR F 7 SHEET 1 EA 5 TYR E 42 TYR E 44 0 SHEET 2 EA 5 CME E 2 THR E 7 1 O LEU E 5 N ASP E 43 SHEET 3 EA 5 CYS E 58 THR E 63 -1 O PHE E 59 N ILE E 6 SHEET 4 EA 5 VAL E 95 ARG E 100 1 O TYR E 96 N VAL E 60 SHEET 5 EA 5 ASN F 106 SER F 110 -1 O PHE F 107 N PHE E 99 SHEET 1 EB 2 ARG E 49 PHE E 50 0 SHEET 2 EB 2 MET F 39 SER F 40 -1 O SER F 40 N ARG E 49 LINK C PRO A 1 N CME A 2 1555 1555 1.33 LINK C CME A 2 N CYS A 3 1555 1555 1.33 LINK C PRO B 1 N CME B 2 1555 1555 1.33 LINK C CME B 2 N CYS B 3 1555 1555 1.33 LINK C PRO C 1 N CME C 2 1555 1555 1.33 LINK C CME C 2 N CYS C 3 1555 1555 1.30 LINK C PRO D 1 N CME D 2 1555 1555 1.34 LINK C CME D 2 N CYS D 3 1555 1555 1.32 LINK C PRO E 1 N CME E 2 1555 1555 1.35 LINK C CME E 2 N CYS E 3 1555 1555 1.36 LINK C PRO F 1 N CME F 2 1555 1555 1.34 LINK C CME F 2 N CYS F 3 1555 1555 1.32 CISPEP 1 GLY C 66 GLY C 67 0 2.39 SITE 1 AC1 5 ASN A 8 LYS A 46 ASN A 54 GLY A 56 SITE 2 AC1 5 HOH A2034 SITE 1 AC2 5 GLU A 55 GLY A 56 LYS A 91 ARG A 94 SITE 2 AC2 5 HOH A2068 SITE 1 AC3 1 HOH B2008 SITE 1 AC4 9 ILE B 68 ASN B 73 PHE B 99 ARG B 100 SITE 2 AC4 9 ASP B 101 HOH B2093 HOH B2100 HOH B2101 SITE 3 AC4 9 PHE C 107 SITE 1 AC5 4 ASN C 8 LYS C 46 ASN C 54 HOH C2041 SITE 1 AC6 4 ASN D 8 LYS D 46 ASN D 54 HOH D2036 SITE 1 AC7 6 ARG E 70 ASN E 73 HOH E2060 HOH E2085 SITE 2 AC7 6 PHE F 107 PHE F 109 SITE 1 AC8 4 ASN F 8 LYS F 46 ASN F 54 HOH F2088 CRYST1 78.703 69.169 80.217 90.00 118.20 90.00 P 1 21 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012706 0.000000 0.006813 0.00000 SCALE2 0.000000 0.014457 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014145 0.00000 MTRIX1 1 0.997900 -0.020400 0.062100 39.32300 1 MTRIX2 1 0.019900 0.999800 0.008800 31.05200 1 MTRIX3 1 -0.062300 -0.007500 0.998000 0.04300 1