HEADER CYTOKINE 11-JUN-09 2WKF TITLE CRYSTAL STRUCTURE OF MACROPHAGE MIGRATION INHIBITORY FACTOR FROM TITLE 2 PLASMODIUM FALCIPARUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROPHAGE MIGRATION INHIBITORY FACTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 2-116; COMPND 5 SYNONYM: MACROPHAGE MIGRATION INHIBITORY FACTOR HOMOLOG, PUTATIVE; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: MACROPHAGE MIGRATION INHIBITORY FACTOR; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: RESIDUES 2-116; COMPND 11 SYNONYM: MACROPHAGE MIGRATION INHIBITORY FACTOR HOMOLOG, PUTATIVE; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: CYS2 IS MODIFIED TO CME IN CHAIN B DUE TO BINDING TO COMPND 14 BETA-MERCAPTOETHANOL SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: 3D7; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE-70; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 11 ORGANISM_TAXID: 36329; SOURCE 12 STRAIN: 3D7; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PQE-70 KEYWDS CYTOKINE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.DOBSON,K.D.AUGUSTIJN,J.A.BRANNIGAN,E.J.DODSON,A.P.WATERS, AUTHOR 2 A.J.WILKINSON REVDAT 5 13-DEC-23 2WKF 1 REMARK LINK REVDAT 4 28-FEB-18 2WKF 1 SOURCE JRNL REVDAT 3 28-SEP-11 2WKF 1 JRNL HETSYN REVDAT 2 13-JUL-11 2WKF 1 VERSN REVDAT 1 27-OCT-09 2WKF 0 JRNL AUTH S.E.DOBSON,K.D.AUGUSTIJN,J.A.BRANNIGAN,C.SCHNICK,C.J.JANSE, JRNL AUTH 2 E.J.DODSON,A.P.WATERS,A.J.WILKINSON JRNL TITL THE CRYSTAL STRUCTURES OF MACROPHAGE MIGRATION INHIBITORY JRNL TITL 2 FACTOR FROM PLASMODIUM FALCIPARUM AND PLASMODIUM BERGHEI. JRNL REF PROTEIN SCI. V. 18 2578 2009 JRNL REFN ESSN 1469-896X JRNL PMID 19827093 JRNL DOI 10.1002/PRO.263 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 11459 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.321 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 587 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 874 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1570 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 83 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.311 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.258 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.200 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.881 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.885 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1603 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2163 ; 1.815 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 203 ; 6.487 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;40.163 ;25.769 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 274 ;16.068 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;14.906 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 249 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1199 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1013 ; 1.054 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1635 ; 1.865 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 590 ; 3.007 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 527 ; 4.726 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 105 REMARK 3 ORIGIN FOR THE GROUP (A): -1.2055 16.8219 3.2877 REMARK 3 T TENSOR REMARK 3 T11: 0.0814 T22: 0.0282 REMARK 3 T33: 0.0892 T12: 0.0055 REMARK 3 T13: -0.0052 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.9248 L22: 0.8603 REMARK 3 L33: 2.0523 L12: -0.4715 REMARK 3 L13: 0.0185 L23: -0.4411 REMARK 3 S TENSOR REMARK 3 S11: -0.0197 S12: -0.0292 S13: 0.0508 REMARK 3 S21: 0.0281 S22: 0.0570 S23: 0.0965 REMARK 3 S31: -0.1721 S32: -0.1523 S33: -0.0373 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 101 REMARK 3 ORIGIN FOR THE GROUP (A): -2.5298 21.5959 -27.6914 REMARK 3 T TENSOR REMARK 3 T11: 0.0269 T22: 0.0651 REMARK 3 T33: 0.1154 T12: 0.0050 REMARK 3 T13: 0.0069 T23: 0.0338 REMARK 3 L TENSOR REMARK 3 L11: 0.4766 L22: 0.9204 REMARK 3 L33: 1.7111 L12: 0.2174 REMARK 3 L13: 0.4110 L23: -0.2173 REMARK 3 S TENSOR REMARK 3 S11: -0.0052 S12: 0.0857 S13: 0.0628 REMARK 3 S21: 0.0871 S22: 0.0123 S23: -0.1094 REMARK 3 S31: -0.0773 S32: 0.0223 S33: -0.0071 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS.U VALUES RESIDUAL ONLY REMARK 4 REMARK 4 2WKF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1290040062. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12419 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.20 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.10 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2WKB REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 1000, 10% PEG 8000, 0.2 M REMARK 280 KSCN, 0.1 M TRIS-HCL PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.64550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.64550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.64550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.64550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.64550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.64550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 41.64550 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 41.64550 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 41.64550 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 41.64550 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 41.64550 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 41.64550 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 41.64550 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 41.64550 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 41.64550 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 41.64550 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 41.64550 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 41.64550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2023 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2018 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 102 REMARK 465 SER A 103 REMARK 465 ALA A 104 REMARK 465 GLN A 105 REMARK 465 ASN A 106 REMARK 465 PHE A 107 REMARK 465 ALA A 108 REMARK 465 PHE A 109 REMARK 465 SER A 110 REMARK 465 GLY A 111 REMARK 465 SER A 112 REMARK 465 LEU A 113 REMARK 465 PHE A 114 REMARK 465 GLY A 115 REMARK 465 GLY A 116 REMARK 465 SER A 117 REMARK 465 ARG A 118 REMARK 465 SER A 119 REMARK 465 HIS A 120 REMARK 465 HIS A 121 REMARK 465 HIS A 122 REMARK 465 HIS A 123 REMARK 465 HIS A 124 REMARK 465 HIS A 125 REMARK 465 PRO B 34 REMARK 465 LEU B 35 REMARK 465 PHE B 107 REMARK 465 ALA B 108 REMARK 465 PHE B 109 REMARK 465 SER B 110 REMARK 465 GLY B 111 REMARK 465 SER B 112 REMARK 465 LEU B 113 REMARK 465 PHE B 114 REMARK 465 GLY B 115 REMARK 465 GLY B 116 REMARK 465 SER B 117 REMARK 465 ARG B 118 REMARK 465 SER B 119 REMARK 465 HIS B 120 REMARK 465 HIS B 121 REMARK 465 HIS B 122 REMARK 465 HIS B 123 REMARK 465 HIS B 124 REMARK 465 HIS B 125 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 70 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 100 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 37 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR B 37 OH REMARK 470 ARG B 70 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 106 CA C O CB CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN B 105 179.41 55.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2012 DISTANCE = 6.78 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1106 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WKB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MACROPHAGE MIGRATION INHIBITORY FACTOR FROM REMARK 900 PLASMODIUM BERGHEI DBREF 2WKF A 1 115 UNP Q8I5C5 Q8I5C5_PLAF7 2 116 DBREF 2WKF A 116 125 PDB 2WKF 2WKF 116 125 DBREF 2WKF B 1 115 UNP Q8I5C5 Q8I5C5_PLAF7 2 116 DBREF 2WKF B 116 125 PDB 2WKF 2WKF 116 125 SEQRES 1 A 125 PRO CYS CYS GLU VAL ILE THR ASN VAL ASN LEU PRO ASP SEQRES 2 A 125 ASP ASN VAL GLN SER THR LEU SER GLN ILE GLU ASN ALA SEQRES 3 A 125 ILE SER ASP VAL MET GLY LYS PRO LEU GLY TYR ILE MET SEQRES 4 A 125 SER ASN TYR ASP TYR GLN LYS ASN LEU ARG PHE GLY GLY SEQRES 5 A 125 SER ASN GLU ALA TYR CYS PHE VAL ARG ILE THR SER ILE SEQRES 6 A 125 GLY GLY ILE ASN ARG SER ASN ASN SER ALA LEU ALA ASP SEQRES 7 A 125 GLN ILE THR LYS LEU LEU VAL SER ASN LEU ASN VAL LYS SEQRES 8 A 125 SER ARG ARG ILE TYR VAL GLU PHE ARG ASP CYS SER ALA SEQRES 9 A 125 GLN ASN PHE ALA PHE SER GLY SER LEU PHE GLY GLY SER SEQRES 10 A 125 ARG SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 125 PRO CME CYS GLU VAL ILE THR ASN VAL ASN LEU PRO ASP SEQRES 2 B 125 ASP ASN VAL GLN SER THR LEU SER GLN ILE GLU ASN ALA SEQRES 3 B 125 ILE SER ASP VAL MET GLY LYS PRO LEU GLY TYR ILE MET SEQRES 4 B 125 SER ASN TYR ASP TYR GLN LYS ASN LEU ARG PHE GLY GLY SEQRES 5 B 125 SER ASN GLU ALA TYR CYS PHE VAL ARG ILE THR SER ILE SEQRES 6 B 125 GLY GLY ILE ASN ARG SER ASN ASN SER ALA LEU ALA ASP SEQRES 7 B 125 GLN ILE THR LYS LEU LEU VAL SER ASN LEU ASN VAL LYS SEQRES 8 B 125 SER ARG ARG ILE TYR VAL GLU PHE ARG ASP CYS SER ALA SEQRES 9 B 125 GLN ASN PHE ALA PHE SER GLY SER LEU PHE GLY GLY SER SEQRES 10 B 125 ARG SER HIS HIS HIS HIS HIS HIS MODRES 2WKF CME B 2 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE HET CME B 2 10 HET GOL A1102 6 HET GOL B1106 6 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CME C5 H11 N O3 S2 FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *83(H2 O) HELIX 1 1 PRO A 12 GLY A 32 1 21 HELIX 2 2 PRO A 34 ILE A 38 5 5 HELIX 3 3 ASN A 69 ASN A 89 1 21 HELIX 4 4 LYS A 91 ARG A 93 5 3 HELIX 5 5 PRO B 12 GLY B 32 1 21 HELIX 6 6 ASN B 72 ASN B 89 1 18 HELIX 7 7 LYS B 91 ARG B 93 5 3 SHEET 1 AA 4 MET A 39 TYR A 44 0 SHEET 2 AA 4 CYS A 2 THR A 7 1 O CYS A 3 N ASN A 41 SHEET 3 AA 4 CYS A 58 THR A 63 -1 O PHE A 59 N ILE A 6 SHEET 4 AA 4 ILE A 95 ARG A 100 1 O TYR A 96 N VAL A 60 SHEET 1 BA 4 TYR B 42 TYR B 44 0 SHEET 2 BA 4 CME B 2 THR B 7 1 O VAL B 5 N ASP B 43 SHEET 3 BA 4 CYS B 58 THR B 63 -1 O PHE B 59 N ILE B 6 SHEET 4 BA 4 ILE B 95 ARG B 100 1 O TYR B 96 N VAL B 60 LINK C PRO B 1 N CME B 2 1555 1555 1.33 LINK C CME B 2 N CYS B 3 1555 1555 1.33 CISPEP 1 ILE A 65 GLY A 66 0 -0.67 SITE 1 AC1 6 PRO A 1 LYS A 33 ILE A 65 SER B 74 SITE 2 AC1 6 GOL B1106 HOH B2039 SITE 1 AC2 7 GOL A1102 ASN B 73 SER B 74 VAL B 97 SITE 2 AC2 7 PHE B 99 GLN B 105 HOH B2039 CRYST1 83.291 83.291 83.291 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012006 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012006 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012006 0.00000 MTRIX1 1 -0.262000 -0.447800 -0.854900 -16.19800 1 MTRIX2 1 0.845600 0.320400 -0.427000 0.73500 1 MTRIX3 1 0.465100 -0.834700 0.294700 31.14300 1