HEADER HYDROLASE 30-JUN-09 2WM8 TITLE CRYSTAL STRUCTURE OF HUMAN MAGNESIUM-DEPENDENT PHOSPHATASE 1 OF THE TITLE 2 HALOACID DEHALOGENASE SUPERFAMILY (MGC5987) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAGNESIUM-DEPENDENT PHOSPHATASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-165; COMPND 5 SYNONYM: MDP-1; COMPND 6 EC: 3.8.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3-PRARE2; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS HALOACID DEHALOGENASE, PROTEIN PHOSPHATASE, HYDROLASE, MAGNESIUM, KEYWDS 2 METAL-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR W.W.YUE,N.SHAFQAT,A.C.W.PIKE,A.CHAIKUAD,J.E.BRAY,E.W.PILKA,N.BURGESS- AUTHOR 2 BROWN,E.HAPKA,P.FILIPPAKOPOULOS,F.VON DELFT,C.ARROWSMITH,J.WEIGELT, AUTHOR 3 A.EDWARDS,C.BOUNTRA,U.OPPERMANN REVDAT 4 13-DEC-23 2WM8 1 REMARK REVDAT 3 24-JAN-18 2WM8 1 JRNL REVDAT 2 13-JUL-11 2WM8 1 VERSN REVDAT 1 28-JUL-09 2WM8 0 JRNL AUTH W.W.YUE,N.SHAFQAT,A.C.W.PIKE,A.CHAIKUAD,J.E.BRAY, JRNL AUTH 2 P.FILIPPAKOPOULOS,F.VON DELFT,C.ARROWSMITH,J.WEIGELT, JRNL AUTH 3 A.EDWARDS,C.BOUNTRA,U.OPPERMANN JRNL TITL CRYSTAL STRUCTURE OF HUMAN MAGNESIUM-DEPENDENT PHOSPHATASE 1 JRNL TITL 2 OF THE HALOACID DEHALOGENASE SUPERFAMILY (MGC5987) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0089 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 21741 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1215 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1548 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1381 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 251 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.61000 REMARK 3 B22 (A**2) : 0.61000 REMARK 3 B33 (A**2) : -1.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.097 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.445 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1471 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1036 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2001 ; 1.139 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2510 ; 0.859 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 185 ; 5.336 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 79 ;32.954 ;23.418 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 255 ;12.908 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.919 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 215 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1656 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 324 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 871 ; 1.577 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 349 ; 0.450 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1421 ; 2.840 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 600 ; 4.765 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 572 ; 7.651 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -7 A 43 REMARK 3 ORIGIN FOR THE GROUP (A): -0.5785 -13.3712 15.5836 REMARK 3 T TENSOR REMARK 3 T11: 0.1190 T22: 0.1104 REMARK 3 T33: 0.0981 T12: -0.0095 REMARK 3 T13: -0.0001 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 0.2123 L22: 0.1057 REMARK 3 L33: 0.1434 L12: -0.1327 REMARK 3 L13: 0.1494 L23: -0.0663 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: 0.0104 S13: -0.0143 REMARK 3 S21: -0.0053 S22: -0.0372 S23: 0.0233 REMARK 3 S31: 0.0001 S32: -0.0165 S33: 0.0295 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 57 REMARK 3 ORIGIN FOR THE GROUP (A): -6.6157 -12.5628 20.1466 REMARK 3 T TENSOR REMARK 3 T11: 0.1208 T22: 0.1458 REMARK 3 T33: 0.0982 T12: 0.0112 REMARK 3 T13: 0.0248 T23: 0.0349 REMARK 3 L TENSOR REMARK 3 L11: 1.4958 L22: 2.6071 REMARK 3 L33: 0.5725 L12: -1.4861 REMARK 3 L13: -0.5304 L23: 1.1850 REMARK 3 S TENSOR REMARK 3 S11: -0.1798 S12: -0.2127 S13: -0.0931 REMARK 3 S21: 0.1520 S22: 0.1500 S23: 0.1078 REMARK 3 S31: 0.0463 S32: 0.0325 S33: 0.0298 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 58 A 119 REMARK 3 ORIGIN FOR THE GROUP (A): 6.3997 -11.9109 9.8558 REMARK 3 T TENSOR REMARK 3 T11: 0.0990 T22: 0.1301 REMARK 3 T33: 0.0953 T12: -0.0048 REMARK 3 T13: -0.0214 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.4398 L22: 0.7447 REMARK 3 L33: 0.2633 L12: -0.3574 REMARK 3 L13: -0.1275 L23: -0.1143 REMARK 3 S TENSOR REMARK 3 S11: -0.0197 S12: -0.0310 S13: 0.0159 REMARK 3 S21: 0.0627 S22: 0.0146 S23: -0.0462 REMARK 3 S31: -0.0180 S32: 0.0674 S33: 0.0051 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 120 A 162 REMARK 3 ORIGIN FOR THE GROUP (A): -2.9084 -22.5468 4.9512 REMARK 3 T TENSOR REMARK 3 T11: 0.1046 T22: 0.1095 REMARK 3 T33: 0.1131 T12: -0.0095 REMARK 3 T13: -0.0104 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.5097 L22: 0.3099 REMARK 3 L33: 1.0130 L12: -0.2167 REMARK 3 L13: -0.0255 L23: -0.0192 REMARK 3 S TENSOR REMARK 3 S11: 0.0417 S12: 0.0231 S13: -0.0767 REMARK 3 S21: -0.0008 S22: -0.0098 S23: 0.0683 REMARK 3 S31: 0.0712 S32: -0.0564 S33: -0.0319 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2WM8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1290040301. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37274 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.84000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1U1P REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NA3(CIT),20% PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.93000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.17000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.17000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 83.89500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.17000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.17000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.96500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.17000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.17000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 83.89500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.17000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.17000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.96500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 55.93000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 SER A -13 REMARK 465 SER A -12 REMARK 465 GLY A -11 REMARK 465 VAL A -10 REMARK 465 ASP A -9 REMARK 465 LEU A -8 REMARK 465 THR A 163 REMARK 465 GLY A 164 REMARK 465 PRO A 165 REMARK 465 LEU A 166 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2118 O HOH A 2119 1.99 REMARK 500 O HOH A 2142 O HOH A 2144 2.04 REMARK 500 O HOH A 2143 O HOH A 2145 2.07 REMARK 500 O HOH A 2048 O HOH A 2061 2.11 REMARK 500 OE1 GLU A 125 O HOH A 2206 2.13 REMARK 500 NZ LYS A 7 O HOH A 2039 2.16 REMARK 500 O HOH A 2205 O HOH A 2206 2.18 REMARK 500 O HOH A 2176 O HOH A 2193 2.18 REMARK 500 O HOH A 2005 O HOH A 2054 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 13 -72.57 -103.38 REMARK 500 PRO A 19 49.08 -85.33 REMARK 500 THR A 24 -49.23 -130.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1163 DBREF 2WM8 A -20 1 PDB 2WM8 2WM8 -20 1 DBREF 2WM8 A 2 166 UNP Q86V88 MGDP1_HUMAN 1 165 SEQRES 1 A 187 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 187 GLY THR GLU ASN LEU TYR PHE GLN SER MET ALA ARG LEU SEQRES 3 A 187 PRO LYS LEU ALA VAL PHE ASP LEU ASP TYR THR LEU TRP SEQRES 4 A 187 PRO PHE TRP VAL ASP THR HIS VAL ASP PRO PRO PHE HIS SEQRES 5 A 187 LYS SER SER ASP GLY THR VAL ARG ASP ARG ARG GLY GLN SEQRES 6 A 187 ASP VAL ARG LEU TYR PRO GLU VAL PRO GLU VAL LEU LYS SEQRES 7 A 187 ARG LEU GLN SER LEU GLY VAL PRO GLY ALA ALA ALA SER SEQRES 8 A 187 ARG THR SER GLU ILE GLU GLY ALA ASN GLN LEU LEU GLU SEQRES 9 A 187 LEU PHE ASP LEU PHE ARG TYR PHE VAL HIS ARG GLU ILE SEQRES 10 A 187 TYR PRO GLY SER LYS ILE THR HIS PHE GLU ARG LEU GLN SEQRES 11 A 187 GLN LYS THR GLY ILE PRO PHE SER GLN MET ILE PHE PHE SEQRES 12 A 187 ASP ASP GLU ARG ARG ASN ILE VAL ASP VAL SER LYS LEU SEQRES 13 A 187 GLY VAL THR CYS ILE HIS ILE GLN ASN GLY MET ASN LEU SEQRES 14 A 187 GLN THR LEU SER GLN GLY LEU GLU THR PHE ALA LYS ALA SEQRES 15 A 187 GLN THR GLY PRO LEU HET EDO A1163 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO C2 H6 O2 FORMUL 3 HOH *251(H2 O) HELIX 1 1 GLY A -7 ARG A 4 1 12 HELIX 2 2 GLU A 51 GLY A 63 1 13 HELIX 3 3 GLU A 74 PHE A 85 1 12 HELIX 4 4 SER A 100 GLY A 113 1 14 HELIX 5 5 PRO A 115 SER A 117 5 3 HELIX 6 6 GLU A 125 LYS A 134 1 10 HELIX 7 7 ASN A 147 ALA A 161 1 15 SHEET 1 AA 5 PHE A 91 ILE A 96 0 SHEET 2 AA 5 GLY A 66 SER A 70 1 O GLY A 66 N HIS A 93 SHEET 3 AA 5 LEU A 8 PHE A 11 1 O ALA A 9 N ALA A 67 SHEET 4 AA 5 MET A 119 ASP A 123 1 O ILE A 120 N VAL A 10 SHEET 5 AA 5 THR A 138 HIS A 141 1 O THR A 138 N PHE A 121 SHEET 1 AB 3 HIS A 31 LYS A 32 0 SHEET 2 AB 3 VAL A 38 ARG A 39 -1 O ARG A 39 N HIS A 31 SHEET 3 AB 3 ASP A 45 VAL A 46 -1 O VAL A 46 N VAL A 38 CISPEP 1 PRO A 28 PRO A 29 0 2.31 SITE 1 AC1 4 HIS A 31 SER A 33 HOH A2086 HOH A2251 CRYST1 62.340 62.340 111.860 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016041 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016041 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008940 0.00000