HEADER CHAPERONE 02-JUL-09 2WMP TITLE STRUCTURE OF THE E. COLI CHAPERONE PAPD IN COMPLEX WITH THE PILIN TITLE 2 DOMAIN OF THE PAPGII ADHESIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAPERONE PROTEIN PAPD; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 22-239; COMPND 5 SYNONYM: PAPD; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: C TERMINUS 6-HISTIDINE TAG; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PAPG PROTEIN; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: PILIN DOMAIN, RESIDUES 214-336; COMPND 12 SYNONYM: PAPGII; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: ADHESIN DOMAIN DELETED (RESIDUES 1 TO 193) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 364106; SOURCE 4 STRAIN: UTI89; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C600; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTRC99A; SOURCE 10 OTHER_DETAILS: GENOMIC DNA; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 13 ORGANISM_TAXID: 562; SOURCE 14 STRAIN: AD110; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: C600; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PTRC99A; SOURCE 20 OTHER_DETAILS: GENOMIC DNA KEYWDS CHAPERONE, CELL ADHESION, DONOR STRAND COMPLEMENTATION, PILIN DOMAIN, KEYWDS 2 IMMUNOGLOBULIN DOMAIN, BACTERIAL ATTACHMENT AND INVASION, DONOR KEYWDS 3 STRAND EXCHANGE, CHAPERONE USHER PATHWAY EXPDTA X-RAY DIFFRACTION AUTHOR B.A.FORD,D.VERGER,J.S.ELAM,K.W.DODSON,J.S.PINKNER,S.J.HULTGREN REVDAT 4 13-DEC-23 2WMP 1 REMARK REVDAT 3 26-DEC-12 2WMP 1 JRNL REVDAT 2 03-OCT-12 2WMP 1 JRNL REMARK VERSN REVDAT 1 25-AUG-10 2WMP 0 JRNL AUTH B.A.FORD,D.VERGER,K.W.DODSON,E.VOLKAN,M.KOSTAKIOTI,J.S.ELAM, JRNL AUTH 2 J.S.PINKNER,G.WAKSMAN,S.J.HULTGREN JRNL TITL STRUCTURE OF THE PAPD-PAPGII PILIN COMPLEX REVEALS AN OPEN JRNL TITL 2 AND FLEXIBLE P5 POCKET. JRNL REF J.BACTERIOL. V. 194 6390 2012 JRNL REFN ISSN 0021-9193 JRNL PMID 23002225 JRNL DOI 10.1128/JB.06651-11 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.W.DODSON,J.S.PINKNER,T.ROSE,G.MAGNUSSON,S.J.HULTGREN, REMARK 1 AUTH 2 G.WAKSMAN REMARK 1 TITL STRUCTURAL BASIS OF THE INTERACTION OF THE PYELONEPHRITIC E. REMARK 1 TITL 2 COLI ADHESIN TO ITS HUMAN KIDNEY RECEPTOR REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 105 733 2001 REMARK 1 REFN ISSN 0092-8674 REMARK 1 PMID 11440716 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 200.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 17899 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 914 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 18 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 915 REMARK 3 BIN R VALUE (WORKING SET) : 0.2781 REMARK 3 BIN FREE R VALUE : 0.3858 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 52 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.054 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2543 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 192 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.39300 REMARK 3 B22 (A**2) : -5.66800 REMARK 3 B33 (A**2) : 5.27500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.318 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.700 ; 0.200 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.920 ; 0.900 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.220 ; 0.200 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.100 ; 0.600 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : DENSITY MODIFICATION REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 25.15 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN_REP.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THIS PDB FILE IS LINKED TO ENTRY 3ME0 REMARK 3 AS BOTH FILES WILL APPEAR IN THE SAME PUBLICATION. REMARK 4 REMARK 4 2WMP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1290040321. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87260 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17935 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 66.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1PDK REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (COMPLEX) AT 9.9 MG/ML 10-12% REMARK 280 PEG 4K 0.1M TRIS-HCL PH 8.5 5% ISOPROPANOL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 33.28000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.23500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.28000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.23500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 217 REMARK 465 LYS A 218 REMARK 465 HIS A 219 REMARK 465 HIS A 220 REMARK 465 HIS A 221 REMARK 465 HIS A 222 REMARK 465 HIS A 223 REMARK 465 HIS A 224 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 16 CG CD CE NZ REMARK 470 GLU A 98 CB CG CD OE1 OE2 REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 ARG A 123 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 161 CG CD CE NZ REMARK 470 LYS A 182 CG CD CE NZ REMARK 470 ILE A 206 CD1 REMARK 470 LYS A 215 CG CD CE NZ REMARK 470 LYS A 216 CA C O CB CG CD CE REMARK 470 LYS A 216 NZ REMARK 470 ILE B 194 CG1 CG2 CD1 REMARK 470 GLN B 202 CG CD OE1 NE2 REMARK 470 SER B 212 CB OG REMARK 470 ILE B 213 CG1 CG2 CD1 REMARK 470 ASN B 214 CB CG OD1 ND2 REMARK 470 LYS B 251 CG CD CE NZ REMARK 470 VAL B 255 CG1 CG2 REMARK 470 LEU B 257 CG CD1 CD2 REMARK 470 ARG B 278 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 292 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 294 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE B 300 CG1 CG2 CD1 REMARK 470 VAL B 304 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 65 -157.92 -160.37 REMARK 500 ASN A 101 74.01 55.04 REMARK 500 PRO A 124 -11.01 -37.64 REMARK 500 ARG A 176 56.76 39.85 REMARK 500 SER A 183 159.09 175.98 REMARK 500 ARG A 200 71.37 -119.25 REMARK 500 SER B 215 78.68 -109.30 REMARK 500 ASN B 242 -64.53 -101.39 REMARK 500 HIS B 259 52.81 36.28 REMARK 500 TYR B 294 -163.08 45.64 REMARK 500 GLU B 296 -128.67 76.54 REMARK 500 LYS B 299 61.76 -108.35 REMARK 500 ILE B 300 -167.54 -56.87 REMARK 500 GLN B 301 49.44 -171.31 REMARK 500 PRO B 302 150.95 -33.49 REMARK 500 VAL B 304 104.48 63.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2007 DISTANCE = 5.95 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QPP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF SELF CAPPING PAPD CHAPERONE HOMODIMERS REMARK 900 RELATED ID: 1QPX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF SELF-CAPPING PAPD CHAPERONE HOMODIMERS REMARK 900 RELATED ID: 1PDK RELATED DB: PDB REMARK 900 PAPD-PAPK CHAPERONE-PILUS SUBUNIT COMPLEX FROM E.COLI P PILUS REMARK 900 RELATED ID: 3DPA RELATED DB: PDB REMARK 900 PAPD REMARK 900 RELATED ID: 1N0L RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PAPD CHAPERONE (C- TERMINALLY 6XHISTIDINE- REMARK 900 TAGGED) BOUND TO THE PAPE PILUS SUBUNIT (N- TERMINAL-DELETED) FROM REMARK 900 UROPATHOGENIC E. COLI REMARK 900 RELATED ID: 3ME0 RELATED DB: PDB REMARK 900 STRUCTURE OF THE E. COLI CHAPERONE PAPD IN COMPLEX WITH THE PILIN REMARK 900 DOMAIN OF THE PAPGII ADHESIN DBREF 2WMP A 1 218 UNP P15319 PAPD_ECOLX 22 239 DBREF 2WMP B 194 316 UNP Q47445 Q47445_ECOLX 214 336 SEQADV 2WMP HIS A 219 UNP P15319 EXPRESSION TAG SEQADV 2WMP HIS A 220 UNP P15319 EXPRESSION TAG SEQADV 2WMP HIS A 221 UNP P15319 EXPRESSION TAG SEQADV 2WMP HIS A 222 UNP P15319 EXPRESSION TAG SEQADV 2WMP HIS A 223 UNP P15319 EXPRESSION TAG SEQADV 2WMP HIS A 224 UNP P15319 EXPRESSION TAG SEQRES 1 A 224 ALA VAL SER LEU ASP ARG THR ARG ALA VAL PHE ASP GLY SEQRES 2 A 224 SER GLU LYS SER MET THR LEU ASP ILE SER ASN ASP ASN SEQRES 3 A 224 LYS GLN LEU PRO TYR LEU ALA GLN ALA TRP ILE GLU ASN SEQRES 4 A 224 GLU ASN GLN GLU LYS ILE ILE THR GLY PRO VAL ILE ALA SEQRES 5 A 224 THR PRO PRO VAL GLN ARG LEU GLU PRO GLY ALA LYS SER SEQRES 6 A 224 MET VAL ARG LEU SER THR THR PRO ASP ILE SER LYS LEU SEQRES 7 A 224 PRO GLN ASP ARG GLU SER LEU PHE TYR PHE ASN LEU ARG SEQRES 8 A 224 GLU ILE PRO PRO ARG SER GLU LYS ALA ASN VAL LEU GLN SEQRES 9 A 224 ILE ALA LEU GLN THR LYS ILE LYS LEU PHE TYR ARG PRO SEQRES 10 A 224 ALA ALA ILE LYS THR ARG PRO ASN GLU VAL TRP GLN ASP SEQRES 11 A 224 GLN LEU ILE LEU ASN LYS VAL SER GLY GLY TYR ARG ILE SEQRES 12 A 224 GLU ASN PRO THR PRO TYR TYR VAL THR VAL ILE GLY LEU SEQRES 13 A 224 GLY GLY SER GLU LYS GLN ALA GLU GLU GLY GLU PHE GLU SEQRES 14 A 224 THR VAL MET LEU SER PRO ARG SER GLU GLN THR VAL LYS SEQRES 15 A 224 SER ALA ASN TYR ASN THR PRO TYR LEU SER TYR ILE ASN SEQRES 16 A 224 ASP TYR GLY GLY ARG PRO VAL LEU SER PHE ILE CYS ASN SEQRES 17 A 224 GLY SER ARG CYS SER VAL LYS LYS GLU LYS HIS HIS HIS SEQRES 18 A 224 HIS HIS HIS SEQRES 1 B 123 ILE GLY GLY CYS ARG PRO SER ALA GLN SER LEU GLU ILE SEQRES 2 B 123 LYS HIS GLY ASP LEU SER ILE ASN SER ALA ASN ASN HIS SEQRES 3 B 123 TYR ALA ALA GLN THR LEU SER VAL SER CYS ASP VAL PRO SEQRES 4 B 123 ALA ASN ILE ARG PHE MET LEU LEU ARG ASN THR THR PRO SEQRES 5 B 123 THR TYR SER HIS GLY LYS LYS PHE SER VAL GLY LEU GLY SEQRES 6 B 123 HIS GLY TRP ASP SER ILE VAL SER VAL ASN GLY VAL ASP SEQRES 7 B 123 THR GLY GLU THR THR MET ARG TRP TYR LYS ALA GLY THR SEQRES 8 B 123 GLN ASN LEU THR ILE GLY SER ARG LEU TYR GLY GLU SER SEQRES 9 B 123 SER LYS ILE GLN PRO GLY VAL LEU SER GLY SER ALA THR SEQRES 10 B 123 LEU LEU MET ILE LEU PRO FORMUL 3 HOH *192(H2 O) HELIX 1 1 PRO A 73 LEU A 78 5 6 HELIX 2 2 PRO A 117 LYS A 121 5 5 HELIX 3 3 VAL A 127 LEU A 132 5 6 HELIX 4 4 SER A 159 GLY A 166 1 8 SHEET 1 AA 4 VAL A 2 LEU A 4 0 SHEET 2 AA 4 SER A 17 ASN A 24 -1 O SER A 23 N SER A 3 SHEET 3 AA 4 LYS A 64 THR A 71 -1 O SER A 65 N ILE A 22 SHEET 4 AA 4 VAL A 50 THR A 53 -1 O ILE A 51 N SER A 70 SHEET 1 AB 4 ARG A 8 ASP A 12 0 SHEET 2 AB 4 VAL A 102 ARG A 116 1 O LYS A 112 N ALA A 9 SHEET 3 AB 4 SER A 84 ILE A 93 -1 O SER A 84 N TYR A 115 SHEET 4 AB 4 TYR A 31 GLU A 38 -1 O LEU A 32 N ILE A 93 SHEET 1 AC 5 ARG A 8 ASP A 12 0 SHEET 2 AC 5 VAL A 102 ARG A 116 1 O LYS A 112 N ALA A 9 SHEET 3 AC 5 SER B 306 ILE B 314 1 O GLY B 307 N GLN A 104 SHEET 4 AC 5 ALA B 233 ARG B 241 -1 O ARG B 236 N ILE B 314 SHEET 5 AC 5 GLU B 274 TRP B 279 -1 O THR B 275 N PHE B 237 SHEET 1 AD 8 VAL A 171 LEU A 173 0 SHEET 2 AD 8 VAL A 151 GLY A 157 -1 O VAL A 151 N LEU A 173 SHEET 3 AD 8 TYR A 190 ILE A 194 -1 O TYR A 190 N GLY A 157 SHEET 4 AD 8 VAL A 202 ASN A 208 -1 O LEU A 203 N LEU A 191 SHEET 5 AD 8 ARG A 211 VAL A 214 -1 O ARG A 211 N ASN A 208 SHEET 6 AD 8 ILE A 133 VAL A 137 -1 O LEU A 134 N CYS A 212 SHEET 7 AD 8 GLY A 140 ASN A 145 -1 O GLY A 140 N VAL A 137 SHEET 8 AD 8 SER A 177 LYS A 182 -1 O SER A 177 N ASN A 145 SHEET 1 BA 5 ARG B 198 PRO B 199 0 SHEET 2 BA 5 TYR B 220 CYS B 229 -1 O SER B 228 N ARG B 198 SHEET 3 BA 5 GLY B 283 LEU B 293 -1 O GLY B 283 N CYS B 229 SHEET 4 BA 5 TRP B 261 VAL B 267 -1 O ILE B 264 N ARG B 292 SHEET 5 BA 5 SER B 254 GLY B 258 -1 O VAL B 255 N SER B 263 SSBOND 1 CYS A 207 CYS A 212 1555 1555 2.03 SSBOND 2 CYS B 197 CYS B 229 1555 1555 2.03 CISPEP 1 GLY A 48 PRO A 49 0 0.45 CISPEP 2 THR A 53 PRO A 54 0 -0.18 CRYST1 66.560 90.470 64.490 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015024 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011053 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015506 0.00000