HEADER MEMBRANE PROTEIN 03-JUL-09 2WMZ TITLE STRUCTURE OF A MUTATED TOLC COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER MEMBRANE PROTEIN TOLC; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: MATURE PROTEIN WITH 43 C-TERMINAL RESIDUES REMOVED, COMPND 5 RESIDUES 23-450; COMPND 6 SYNONYM: TOLC OUTER MEMBRANE PROTEIN; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL923(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: TOLC-; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PT7TOLC KEYWDS MEMBRANE PROTEIN, TYPE-I SECRETION, CELL OUTER MEMBRANE, TRANSPORT, KEYWDS 2 DRUG-EFFLUX EXPDTA X-RAY DIFFRACTION AUTHOR P.HINCHLIFFE,X.Y.PEI,M.F.SYMMONS,E.KORONAKIS,C.HUGHES,V.KORONAKIS REVDAT 3 13-DEC-23 2WMZ 1 REMARK REVDAT 2 16-FEB-11 2WMZ 1 JRNL REVDAT 1 26-JAN-11 2WMZ 0 JRNL AUTH X.Y.PEI,P.HINCHLIFFE,M.F.SYMMONS,E.KORONAKIS,R.BENZ, JRNL AUTH 2 C.HUGHES,V.KORONAKIS JRNL TITL STRUCTURES OF SEQUENTIAL OPEN STATES IN A SYMMETRICAL JRNL TITL 2 OPENING TRANSITION OF THE TOLC EXIT DUCT. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 2112 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 21245342 JRNL DOI 10.1073/PNAS.1012588108 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2898038.020 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 51195 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.258 REMARK 3 FREE R VALUE : 0.301 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2611 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7909 REMARK 3 BIN R VALUE (WORKING SET) : 0.4460 REMARK 3 BIN FREE R VALUE : 0.5000 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 425 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.024 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9903 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 24 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 61.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 51.00780 REMARK 3 B22 (A**2) : -22.77000 REMARK 3 B33 (A**2) : -28.23610 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.49 REMARK 3 ESD FROM SIGMAA (A) : 1.05 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.58 REMARK 3 ESD FROM C-V SIGMAA (A) : 1.18 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 19.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.750 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : PHENIX FLAT BULK SOLVENT MODEL REMARK 3 KSOL : 0.28 REMARK 3 BSOL : 24.73 REMARK 3 REMARK 3 NCS MODEL : RESTRAINED REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : 0.04 ; 200 REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 GROUP 2 POSITIONAL (A) : 0.04 ; 200 REMARK 3 GROUP 2 B-FACTOR (A**2) : NULL ; NULL REMARK 3 GROUP 3 POSITIONAL (A) : 0.07 ; 300 REMARK 3 GROUP 3 B-FACTOR (A**2) : NULL ; NULL REMARK 3 GROUP 4 POSITIONAL (A) : 0.06 ; 100 REMARK 3 GROUP 4 B-FACTOR (A**2) : NULL ; NULL REMARK 3 GROUP 5 POSITIONAL (A) : 0.06 ; 100 REMARK 3 GROUP 5 B-FACTOR (A**2) : NULL ; NULL REMARK 3 GROUP 6 POSITIONAL (A) : 0.04 ; 200 REMARK 3 GROUP 6 B-FACTOR (A**2) : NULL ; NULL REMARK 3 GROUP 7 POSITIONAL (A) : 0.06 ; 100 REMARK 3 GROUP 7 B-FACTOR (A**2) : NULL ; NULL REMARK 3 GROUP 8 POSITIONAL (A) : 0.06 ; 100 REMARK 3 GROUP 8 B-FACTOR (A**2) : NULL ; NULL REMARK 3 GROUP 9 POSITIONAL (A) : 0.06 ; 100 REMARK 3 GROUP 9 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: GEOMETRIC REFINEMENT WAS CARRIED OUT REMARK 3 USING CNS VERSION 1.1. B-FACTOR REFINEMENT, BULK SOLVENT REMARK 3 MODELLING, AND FINAL R-FACTORS ARE FROM PHENIX. TRIETHYLENE REMARK 3 GLYCOL PARAMETER FILE AND TOPOLOGY FILE WERE FROM HIC-UP REMARK 3 DATABASE. REMARK 4 REMARK 4 2WMZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1290040263. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 OPTICS : KIRKPATRICK BAEZ BIMORPH MIRROR REMARK 200 PAIR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51195 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 29.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1EK9 CHAIN A REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS PH 8.2, 50 MM NACL, 14% REMARK 280 PEG2000, 0.075% N-DODECYL-BETA-D-MALTOSIDE, 0.3% N-OCTYL BETA-D- REMARK 280 GLUCOPYRANOSIDE, PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 62.34500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.23500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 67.61000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.23500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 62.34500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 67.61000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ARG 389 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ARG 389 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN C, ARG 389 TO SER REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 268 N ALA A 270 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 13 -14.99 -155.05 REMARK 500 ASN A 14 107.79 -55.75 REMARK 500 SER A 36 -54.24 -29.12 REMARK 500 TYR A 54 28.59 -146.52 REMARK 500 ARG A 55 -111.31 -150.42 REMARK 500 ALA A 67 94.76 -172.89 REMARK 500 ILE A 133 -6.29 -55.98 REMARK 500 GLN A 207 158.66 -48.74 REMARK 500 ARG A 219 -23.21 -152.24 REMARK 500 SER A 264 -79.14 -41.41 REMARK 500 LYS A 265 5.49 -54.03 REMARK 500 ALA A 269 -36.29 -9.30 REMARK 500 ALA A 270 -98.24 50.65 REMARK 500 ASN A 416 -8.25 -57.77 REMARK 500 ALA A 418 2.98 -64.64 REMARK 500 SER A 420 -86.64 -178.43 REMARK 500 LYS A 421 107.07 -47.36 REMARK 500 SER B 13 -15.39 -154.87 REMARK 500 SER B 36 -56.21 -27.76 REMARK 500 TYR B 54 30.12 -146.05 REMARK 500 ARG B 55 -112.89 -151.70 REMARK 500 ALA B 67 92.57 -173.24 REMARK 500 ILE B 133 -9.45 -54.28 REMARK 500 ALA B 150 175.89 -59.77 REMARK 500 LYS B 205 130.77 -39.19 REMARK 500 GLN B 207 157.89 -48.85 REMARK 500 ARG B 219 -24.09 -149.52 REMARK 500 SER B 264 -82.11 -43.52 REMARK 500 LYS B 265 3.65 -51.34 REMARK 500 ALA B 269 -36.17 -13.02 REMARK 500 ALA B 270 -100.18 51.62 REMARK 500 ASN B 416 -8.47 -57.29 REMARK 500 ALA B 418 0.40 -63.08 REMARK 500 SER B 420 -85.02 -178.45 REMARK 500 LYS B 421 108.34 -48.90 REMARK 500 SER C 13 -14.28 -153.41 REMARK 500 SER C 36 -54.43 -28.37 REMARK 500 TYR C 54 29.08 -145.91 REMARK 500 ARG C 55 -113.44 -151.32 REMARK 500 ALA C 67 92.76 -173.63 REMARK 500 ILE C 133 -4.63 -56.64 REMARK 500 ARG C 219 -26.27 -149.10 REMARK 500 SER C 264 -80.74 -44.08 REMARK 500 LYS C 265 2.17 -52.60 REMARK 500 ALA C 269 -39.20 -13.25 REMARK 500 ALA C 270 -101.84 54.02 REMARK 500 ALA C 357 -70.29 -68.43 REMARK 500 ALA C 418 2.45 -63.90 REMARK 500 SER C 420 -87.69 178.54 REMARK 500 LYS C 421 106.03 -46.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 TRIETHYLENE GLYCOL (PGE): FRAGMENT OF PRECIPITANT REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 13-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 14-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1429 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 1430 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1429 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1430 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE B 1431 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE B 1432 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 1429 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE C 1430 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE C 1431 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EK9 RELATED DB: PDB REMARK 900 2.1A X-RAY STRUCTURE OF TOLC: AN INTEGRAL OUTER MEMBRANEPROTEIN AND REMARK 900 EFFLUX PUMP COMPONENT FROM ESCHERICHIA COLI REMARK 900 RELATED ID: 2VDE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE OPEN STATE OF TOLC OUTER MEMBRANE REMARK 900 COMPONENT OF MUTLIDRUG EFFLUX PUMPS REMARK 900 RELATED ID: 1TTQ RELATED DB: PDB REMARK 900 TRYPTOPHAN SYNTHASE IN THE PRESENCE OF POTASSIUM AT ROOM TEMPERATURE REMARK 900 RELATED ID: 1TQQ RELATED DB: PDB REMARK 900 STRUCTURE OF TOLC IN COMPLEX WITH HEXAMMINECOBALT REMARK 900 RELATED ID: 2VDD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE OPEN STATE OF TOLC OUTER MEMBRANE REMARK 900 COMPONENT OF MUTLIDRUG EFFLUX PUMPS RELATED STRUCTURES ARE WILD REMARK 900 TYPE (PDBID 1EK9) STRUCTURE WITH R367S AND Y362F MUTATIONS (PDBID REMARK 900 2WM7) REMARK 999 REMARK 999 SEQUENCE REMARK 999 V TO L AT GENE POSITION 191 IN ISOLATE USED FOR STRUCTURE REMARK 999 DETERMINATION - CORRESPONDS TO L169 IN THE MATURE FORM OF REMARK 999 PROTEIN CRYSTALLIZED DBREF 2WMZ A 1 428 UNP P02930 TOLC_ECOLI 23 450 DBREF 2WMZ B 1 428 UNP P02930 TOLC_ECOLI 23 450 DBREF 2WMZ C 1 428 UNP P02930 TOLC_ECOLI 23 450 SEQADV 2WMZ LEU A 169 UNP P02930 VAL 191 SEE REMARK 999 SEQADV 2WMZ SER A 367 UNP P02930 ARG 389 ENGINEERED MUTATION SEQADV 2WMZ LEU B 169 UNP P02930 VAL 191 SEE REMARK 999 SEQADV 2WMZ SER B 367 UNP P02930 ARG 389 ENGINEERED MUTATION SEQADV 2WMZ LEU C 169 UNP P02930 VAL 191 SEE REMARK 999 SEQADV 2WMZ SER C 367 UNP P02930 ARG 389 ENGINEERED MUTATION SEQRES 1 A 428 GLU ASN LEU MET GLN VAL TYR GLN GLN ALA ARG LEU SER SEQRES 2 A 428 ASN PRO GLU LEU ARG LYS SER ALA ALA ASP ARG ASP ALA SEQRES 3 A 428 ALA PHE GLU LYS ILE ASN GLU ALA ARG SER PRO LEU LEU SEQRES 4 A 428 PRO GLN LEU GLY LEU GLY ALA ASP TYR THR TYR SER ASN SEQRES 5 A 428 GLY TYR ARG ASP ALA ASN GLY ILE ASN SER ASN ALA THR SEQRES 6 A 428 SER ALA SER LEU GLN LEU THR GLN SER ILE PHE ASP MET SEQRES 7 A 428 SER LYS TRP ARG ALA LEU THR LEU GLN GLU LYS ALA ALA SEQRES 8 A 428 GLY ILE GLN ASP VAL THR TYR GLN THR ASP GLN GLN THR SEQRES 9 A 428 LEU ILE LEU ASN THR ALA THR ALA TYR PHE ASN VAL LEU SEQRES 10 A 428 ASN ALA ILE ASP VAL LEU SER TYR THR GLN ALA GLN LYS SEQRES 11 A 428 GLU ALA ILE TYR ARG GLN LEU ASP GLN THR THR GLN ARG SEQRES 12 A 428 PHE ASN VAL GLY LEU VAL ALA ILE THR ASP VAL GLN ASN SEQRES 13 A 428 ALA ARG ALA GLN TYR ASP THR VAL LEU ALA ASN GLU LEU SEQRES 14 A 428 THR ALA ARG ASN ASN LEU ASP ASN ALA VAL GLU GLN LEU SEQRES 15 A 428 ARG GLN ILE THR GLY ASN TYR TYR PRO GLU LEU ALA ALA SEQRES 16 A 428 LEU ASN VAL GLU ASN PHE LYS THR ASP LYS PRO GLN PRO SEQRES 17 A 428 VAL ASN ALA LEU LEU LYS GLU ALA GLU LYS ARG ASN LEU SEQRES 18 A 428 SER LEU LEU GLN ALA ARG LEU SER GLN ASP LEU ALA ARG SEQRES 19 A 428 GLU GLN ILE ARG GLN ALA GLN ASP GLY HIS LEU PRO THR SEQRES 20 A 428 LEU ASP LEU THR ALA SER THR GLY ILE SER ASP THR SER SEQRES 21 A 428 TYR SER GLY SER LYS THR ARG GLY ALA ALA GLY THR GLN SEQRES 22 A 428 TYR ASP ASP SER ASN MET GLY GLN ASN LYS VAL GLY LEU SEQRES 23 A 428 SER PHE SER LEU PRO ILE TYR GLN GLY GLY MET VAL ASN SEQRES 24 A 428 SER GLN VAL LYS GLN ALA GLN TYR ASN PHE VAL GLY ALA SEQRES 25 A 428 SER GLU GLN LEU GLU SER ALA HIS ARG SER VAL VAL GLN SEQRES 26 A 428 THR VAL ARG SER SER PHE ASN ASN ILE ASN ALA SER ILE SEQRES 27 A 428 SER SER ILE ASN ALA TYR LYS GLN ALA VAL VAL SER ALA SEQRES 28 A 428 GLN SER SER LEU ASP ALA MET GLU ALA GLY TYR SER VAL SEQRES 29 A 428 GLY THR SER THR ILE VAL ASP VAL LEU ASP ALA THR THR SEQRES 30 A 428 THR LEU TYR ASN ALA LYS GLN GLU LEU ALA ASN ALA ARG SEQRES 31 A 428 TYR ASN TYR LEU ILE ASN GLN LEU ASN ILE LYS SER ALA SEQRES 32 A 428 LEU GLY THR LEU ASN GLU GLN ASP LEU LEU ALA LEU ASN SEQRES 33 A 428 ASN ALA LEU SER LYS PRO VAL SER THR ASN PRO GLU SEQRES 1 B 428 GLU ASN LEU MET GLN VAL TYR GLN GLN ALA ARG LEU SER SEQRES 2 B 428 ASN PRO GLU LEU ARG LYS SER ALA ALA ASP ARG ASP ALA SEQRES 3 B 428 ALA PHE GLU LYS ILE ASN GLU ALA ARG SER PRO LEU LEU SEQRES 4 B 428 PRO GLN LEU GLY LEU GLY ALA ASP TYR THR TYR SER ASN SEQRES 5 B 428 GLY TYR ARG ASP ALA ASN GLY ILE ASN SER ASN ALA THR SEQRES 6 B 428 SER ALA SER LEU GLN LEU THR GLN SER ILE PHE ASP MET SEQRES 7 B 428 SER LYS TRP ARG ALA LEU THR LEU GLN GLU LYS ALA ALA SEQRES 8 B 428 GLY ILE GLN ASP VAL THR TYR GLN THR ASP GLN GLN THR SEQRES 9 B 428 LEU ILE LEU ASN THR ALA THR ALA TYR PHE ASN VAL LEU SEQRES 10 B 428 ASN ALA ILE ASP VAL LEU SER TYR THR GLN ALA GLN LYS SEQRES 11 B 428 GLU ALA ILE TYR ARG GLN LEU ASP GLN THR THR GLN ARG SEQRES 12 B 428 PHE ASN VAL GLY LEU VAL ALA ILE THR ASP VAL GLN ASN SEQRES 13 B 428 ALA ARG ALA GLN TYR ASP THR VAL LEU ALA ASN GLU LEU SEQRES 14 B 428 THR ALA ARG ASN ASN LEU ASP ASN ALA VAL GLU GLN LEU SEQRES 15 B 428 ARG GLN ILE THR GLY ASN TYR TYR PRO GLU LEU ALA ALA SEQRES 16 B 428 LEU ASN VAL GLU ASN PHE LYS THR ASP LYS PRO GLN PRO SEQRES 17 B 428 VAL ASN ALA LEU LEU LYS GLU ALA GLU LYS ARG ASN LEU SEQRES 18 B 428 SER LEU LEU GLN ALA ARG LEU SER GLN ASP LEU ALA ARG SEQRES 19 B 428 GLU GLN ILE ARG GLN ALA GLN ASP GLY HIS LEU PRO THR SEQRES 20 B 428 LEU ASP LEU THR ALA SER THR GLY ILE SER ASP THR SER SEQRES 21 B 428 TYR SER GLY SER LYS THR ARG GLY ALA ALA GLY THR GLN SEQRES 22 B 428 TYR ASP ASP SER ASN MET GLY GLN ASN LYS VAL GLY LEU SEQRES 23 B 428 SER PHE SER LEU PRO ILE TYR GLN GLY GLY MET VAL ASN SEQRES 24 B 428 SER GLN VAL LYS GLN ALA GLN TYR ASN PHE VAL GLY ALA SEQRES 25 B 428 SER GLU GLN LEU GLU SER ALA HIS ARG SER VAL VAL GLN SEQRES 26 B 428 THR VAL ARG SER SER PHE ASN ASN ILE ASN ALA SER ILE SEQRES 27 B 428 SER SER ILE ASN ALA TYR LYS GLN ALA VAL VAL SER ALA SEQRES 28 B 428 GLN SER SER LEU ASP ALA MET GLU ALA GLY TYR SER VAL SEQRES 29 B 428 GLY THR SER THR ILE VAL ASP VAL LEU ASP ALA THR THR SEQRES 30 B 428 THR LEU TYR ASN ALA LYS GLN GLU LEU ALA ASN ALA ARG SEQRES 31 B 428 TYR ASN TYR LEU ILE ASN GLN LEU ASN ILE LYS SER ALA SEQRES 32 B 428 LEU GLY THR LEU ASN GLU GLN ASP LEU LEU ALA LEU ASN SEQRES 33 B 428 ASN ALA LEU SER LYS PRO VAL SER THR ASN PRO GLU SEQRES 1 C 428 GLU ASN LEU MET GLN VAL TYR GLN GLN ALA ARG LEU SER SEQRES 2 C 428 ASN PRO GLU LEU ARG LYS SER ALA ALA ASP ARG ASP ALA SEQRES 3 C 428 ALA PHE GLU LYS ILE ASN GLU ALA ARG SER PRO LEU LEU SEQRES 4 C 428 PRO GLN LEU GLY LEU GLY ALA ASP TYR THR TYR SER ASN SEQRES 5 C 428 GLY TYR ARG ASP ALA ASN GLY ILE ASN SER ASN ALA THR SEQRES 6 C 428 SER ALA SER LEU GLN LEU THR GLN SER ILE PHE ASP MET SEQRES 7 C 428 SER LYS TRP ARG ALA LEU THR LEU GLN GLU LYS ALA ALA SEQRES 8 C 428 GLY ILE GLN ASP VAL THR TYR GLN THR ASP GLN GLN THR SEQRES 9 C 428 LEU ILE LEU ASN THR ALA THR ALA TYR PHE ASN VAL LEU SEQRES 10 C 428 ASN ALA ILE ASP VAL LEU SER TYR THR GLN ALA GLN LYS SEQRES 11 C 428 GLU ALA ILE TYR ARG GLN LEU ASP GLN THR THR GLN ARG SEQRES 12 C 428 PHE ASN VAL GLY LEU VAL ALA ILE THR ASP VAL GLN ASN SEQRES 13 C 428 ALA ARG ALA GLN TYR ASP THR VAL LEU ALA ASN GLU LEU SEQRES 14 C 428 THR ALA ARG ASN ASN LEU ASP ASN ALA VAL GLU GLN LEU SEQRES 15 C 428 ARG GLN ILE THR GLY ASN TYR TYR PRO GLU LEU ALA ALA SEQRES 16 C 428 LEU ASN VAL GLU ASN PHE LYS THR ASP LYS PRO GLN PRO SEQRES 17 C 428 VAL ASN ALA LEU LEU LYS GLU ALA GLU LYS ARG ASN LEU SEQRES 18 C 428 SER LEU LEU GLN ALA ARG LEU SER GLN ASP LEU ALA ARG SEQRES 19 C 428 GLU GLN ILE ARG GLN ALA GLN ASP GLY HIS LEU PRO THR SEQRES 20 C 428 LEU ASP LEU THR ALA SER THR GLY ILE SER ASP THR SER SEQRES 21 C 428 TYR SER GLY SER LYS THR ARG GLY ALA ALA GLY THR GLN SEQRES 22 C 428 TYR ASP ASP SER ASN MET GLY GLN ASN LYS VAL GLY LEU SEQRES 23 C 428 SER PHE SER LEU PRO ILE TYR GLN GLY GLY MET VAL ASN SEQRES 24 C 428 SER GLN VAL LYS GLN ALA GLN TYR ASN PHE VAL GLY ALA SEQRES 25 C 428 SER GLU GLN LEU GLU SER ALA HIS ARG SER VAL VAL GLN SEQRES 26 C 428 THR VAL ARG SER SER PHE ASN ASN ILE ASN ALA SER ILE SEQRES 27 C 428 SER SER ILE ASN ALA TYR LYS GLN ALA VAL VAL SER ALA SEQRES 28 C 428 GLN SER SER LEU ASP ALA MET GLU ALA GLY TYR SER VAL SEQRES 29 C 428 GLY THR SER THR ILE VAL ASP VAL LEU ASP ALA THR THR SEQRES 30 C 428 THR LEU TYR ASN ALA LYS GLN GLU LEU ALA ASN ALA ARG SEQRES 31 C 428 TYR ASN TYR LEU ILE ASN GLN LEU ASN ILE LYS SER ALA SEQRES 32 C 428 LEU GLY THR LEU ASN GLU GLN ASP LEU LEU ALA LEU ASN SEQRES 33 C 428 ASN ALA LEU SER LYS PRO VAL SER THR ASN PRO GLU HET CL A1429 1 HET PGE A1430 10 HET CL B1429 1 HET NA B1430 1 HET PGE B1431 10 HET PGE B1432 10 HET CL C1429 1 HET PGE C1430 10 HET PGE C1431 10 HETNAM CL CHLORIDE ION HETNAM PGE TRIETHYLENE GLYCOL HETNAM NA SODIUM ION FORMUL 4 CL 3(CL 1-) FORMUL 5 PGE 5(C6 H14 O4) FORMUL 7 NA NA 1+ FORMUL 13 HOH *24(H2 O) HELIX 1 1 ASN A 2 LEU A 12 1 11 HELIX 2 2 ASN A 14 SER A 36 1 23 HELIX 3 3 PRO A 37 LEU A 39 5 3 HELIX 4 4 ASP A 77 ASN A 145 1 69 HELIX 5 5 ALA A 150 GLY A 187 1 38 HELIX 6 6 PRO A 208 GLU A 217 1 10 HELIX 7 7 ASN A 220 ASP A 242 1 23 HELIX 8 8 GLY A 243 LEU A 245 5 3 HELIX 9 9 GLY A 263 ARG A 267 5 5 HELIX 10 10 GLY A 296 SER A 363 1 68 HELIX 11 11 THR A 368 GLY A 405 1 38 HELIX 12 12 GLN A 410 LEU A 415 1 6 HELIX 13 13 ASN B 2 LEU B 12 1 11 HELIX 14 14 ASN B 14 SER B 36 1 23 HELIX 15 15 PRO B 37 LEU B 39 5 3 HELIX 16 16 ASP B 77 ASN B 145 1 69 HELIX 17 17 ALA B 150 GLY B 187 1 38 HELIX 18 18 PRO B 208 GLU B 217 1 10 HELIX 19 19 ASN B 220 ASP B 242 1 23 HELIX 20 20 GLY B 243 LEU B 245 5 3 HELIX 21 21 GLY B 263 ARG B 267 5 5 HELIX 22 22 GLY B 296 SER B 363 1 68 HELIX 23 23 THR B 368 GLY B 405 1 38 HELIX 24 24 GLN B 410 LEU B 415 1 6 HELIX 25 25 ASN C 2 ARG C 11 1 10 HELIX 26 26 ASN C 14 SER C 36 1 23 HELIX 27 27 PRO C 37 LEU C 39 5 3 HELIX 28 28 ASP C 77 ASN C 145 1 69 HELIX 29 29 ALA C 150 GLY C 187 1 38 HELIX 30 30 PRO C 208 GLU C 217 1 10 HELIX 31 31 ASN C 220 ASP C 242 1 23 HELIX 32 32 GLY C 243 LEU C 245 5 3 HELIX 33 33 GLY C 263 ARG C 267 5 5 HELIX 34 34 GLY C 296 SER C 363 1 68 HELIX 35 35 THR C 368 GLY C 405 1 38 HELIX 36 36 GLN C 410 ALA C 418 1 9 SHEET 1 AA14 GLN A 41 GLY A 53 0 SHEET 2 AA14 ASN A 61 PHE A 76 -1 O SER A 62 N SER A 51 SHEET 3 AA14 THR A 247 SER A 262 -1 O LEU A 248 N ILE A 75 SHEET 4 AA14 SER A 277 GLN A 294 -1 O SER A 277 N THR A 259 SHEET 5 AA14 GLN C 41 GLY C 53 -1 O LEU C 42 N ILE A 292 SHEET 6 AA14 ASN C 61 PHE C 76 -1 O SER C 62 N SER C 51 SHEET 7 AA14 THR C 247 SER C 262 -1 O LEU C 248 N ILE C 75 SHEET 8 AA14 SER C 277 GLN C 294 -1 O SER C 277 N THR C 259 SHEET 9 AA14 GLN B 41 GLY B 53 -1 O LEU B 42 N TYR C 293 SHEET 10 AA14 ASN B 61 PHE B 76 -1 O SER B 62 N SER B 51 SHEET 11 AA14 THR B 247 SER B 262 -1 O LEU B 248 N ILE B 75 SHEET 12 AA14 SER B 277 GLN B 294 -1 O SER B 277 N THR B 259 SHEET 13 AA14 GLN A 41 GLY A 53 -1 O LEU A 42 N TYR B 293 SHEET 14 AA14 GLN A 41 GLY A 53 0 SHEET 1 AB 2 GLU A 192 LEU A 196 0 SHEET 2 AB 2 LEU A 419 SER A 424 -1 N SER A 420 O ALA A 195 SHEET 1 BA 2 GLU B 192 LEU B 196 0 SHEET 2 BA 2 LEU B 419 SER B 424 -1 N SER B 420 O ALA B 195 SHEET 1 CA 2 GLU C 192 LEU C 196 0 SHEET 2 CA 2 LEU C 419 SER C 424 -1 N SER C 420 O ALA C 195 SITE 1 AC1 4 GLN A 294 GLY A 296 MET A 297 VAL A 298 SITE 1 AC2 3 LEU A 42 GLY A 43 HOH B2009 SITE 1 AC3 4 GLN B 294 GLY B 296 MET B 297 VAL B 298 SITE 1 AC4 2 GLU B 180 ASN C 332 SITE 1 AC5 2 LEU B 42 GLY B 43 SITE 1 AC6 3 GLN B 236 GLN B 301 ASN B 308 SITE 1 AC7 4 GLN C 294 GLY C 296 MET C 297 VAL C 298 SITE 1 AC8 3 GLN C 236 ALA C 305 ASN C 308 SITE 1 AC9 2 SER A 289 GLY C 43 CRYST1 124.690 135.220 136.470 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008020 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007395 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007328 0.00000 MTRIX1 1 -0.505310 -0.724830 -0.468280 -82.09022 1 MTRIX2 1 0.701810 -0.029440 -0.711750 -0.20813 1 MTRIX3 1 0.502120 -0.688300 0.523570 1.29388 1 MTRIX1 2 -0.491610 0.711490 0.502100 -40.76891 1 MTRIX2 2 -0.730220 -0.022680 -0.682830 -58.58141 1 MTRIX3 2 -0.474440 -0.702330 0.530690 -39.16811 1