HEADER OXIDOREDUCTASE 06-JUL-09 2WN0 OBSLTE 03-NOV-10 2WN0 2WWO TITLE YERSINIA PSEUDOTUBERCULOSIS SUPEROXIDE DISMUTASE C COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [CU-ZN]; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SUPEROXIDE DISMUTASE C; COMPND 5 EC: 1.15.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PSEUDOTUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 633; SOURCE 4 STRAIN: IP32953; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(STAR); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX-6P KEYWDS ZINC, COPPER, METAL-BINDING, OXIDOREDUCTASE, SUPEROXIDE KEYWDS 2 DISMUTASE, YERSINIA PSEUDOTUBERCULOSIS EXPDTA X-RAY DIFFRACTION AUTHOR A.K.BASAK,M.L.DUFFIELD,C.E.NAYLOR,J.HUYET,R.W.TITBALL REVDAT 2 03-NOV-10 2WN0 1 OBSLTE REVDAT 1 21-JUL-09 2WN0 0 JRNL AUTH J.HUYET,C.E.NAYLOR,R.W.TITBALL,H.BULLIFENT, JRNL AUTH 2 N.WALKER,H.E.JONES,M.L.DUFFIED,A.K.BASAK JRNL TITL CRYSTAL STRUCTURE OF THE YERSINIA JRNL TITL 2 PSEUDOTUBERCULOSIS SUPEROXIDE DISMUTASE (SODC) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.400 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.773 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.54 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.92 REMARK 3 NUMBER OF REFLECTIONS : 17946 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.1735 REMARK 3 R VALUE (WORKING SET) : 0.1717 REMARK 3 FREE R VALUE : 0.2088 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 916 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7832 - 4.5900 1.00 2564 117 0.1566 0.1814 REMARK 3 2 4.5900 - 3.6436 1.00 2460 129 0.1381 0.1665 REMARK 3 3 3.6436 - 3.1831 1.00 2386 153 0.1711 0.2037 REMARK 3 4 3.1831 - 2.8921 1.00 2434 116 0.1748 0.2526 REMARK 3 5 2.8921 - 2.6848 1.00 2408 135 0.1748 0.2262 REMARK 3 6 2.6848 - 2.5265 1.00 2412 128 0.1802 0.2226 REMARK 3 7 2.5265 - 2.4000 1.00 2366 138 0.2013 0.2578 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.354 REMARK 3 B_SOL : 58.410 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.31 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.46 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.6 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.6673 REMARK 3 B22 (A**2) : 5.6673 REMARK 3 B33 (A**2) : -11.3345 REMARK 3 B12 (A**2) : -0.0000 REMARK 3 B13 (A**2) : -0.0000 REMARK 3 B23 (A**2) : -0.0000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2323 REMARK 3 ANGLE : 0.853 3160 REMARK 3 CHIRALITY : 0.054 351 REMARK 3 PLANARITY : 0.008 421 REMARK 3 DIHEDRAL : 15.826 824 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 4:21 REMARK 3 ORIGIN FOR THE GROUP (A): 45.0793 16.9545 -42.5106 REMARK 3 T TENSOR REMARK 3 T11: 0.6021 T22: 0.3994 REMARK 3 T33: 0.2878 T12: 0.0539 REMARK 3 T13: -0.0865 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.3509 L22: 0.0922 REMARK 3 L33: 0.2756 L12: 0.0826 REMARK 3 L13: -0.1122 L23: -0.5048 REMARK 3 S TENSOR REMARK 3 S11: 0.0387 S12: 0.3177 S13: -0.1121 REMARK 3 S21: -0.6785 S22: 0.2888 S23: -0.4590 REMARK 3 S31: -0.1950 S32: 0.1758 S33: 0.0004 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 22:75 REMARK 3 ORIGIN FOR THE GROUP (A): 46.0945 10.9480 -38.9874 REMARK 3 T TENSOR REMARK 3 T11: 0.4863 T22: 0.3578 REMARK 3 T33: 0.2770 T12: 0.0827 REMARK 3 T13: -0.0623 T23: -0.0224 REMARK 3 L TENSOR REMARK 3 L11: 0.2580 L22: 0.0505 REMARK 3 L33: 1.3098 L12: 0.3734 REMARK 3 L13: -0.3852 L23: -0.6320 REMARK 3 S TENSOR REMARK 3 S11: 0.0160 S12: 0.3246 S13: 0.0113 REMARK 3 S21: -0.2592 S22: -0.1594 S23: 0.0265 REMARK 3 S31: 0.2043 S32: 0.1067 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESID 76:155 REMARK 3 ORIGIN FOR THE GROUP (A): 49.4319 8.1406 -31.2989 REMARK 3 T TENSOR REMARK 3 T11: 0.3869 T22: 0.3394 REMARK 3 T33: 0.3088 T12: 0.0609 REMARK 3 T13: 0.0033 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.2823 L22: 1.3295 REMARK 3 L33: 1.2822 L12: -0.0884 REMARK 3 L13: 0.1801 L23: 0.2915 REMARK 3 S TENSOR REMARK 3 S11: -0.0304 S12: 0.0513 S13: -0.1224 REMARK 3 S21: -0.1896 S22: -0.1412 S23: -0.0325 REMARK 3 S31: 0.3387 S32: 0.1061 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESID 156:161 REMARK 3 ORIGIN FOR THE GROUP (A): 49.9977 15.2561 -43.0910 REMARK 3 T TENSOR REMARK 3 T11: 0.5015 T22: 0.3563 REMARK 3 T33: 0.2767 T12: 0.0665 REMARK 3 T13: 0.0262 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.0323 L22: -0.0428 REMARK 3 L33: 0.0067 L12: 0.0386 REMARK 3 L13: 0.0366 L23: 0.0747 REMARK 3 S TENSOR REMARK 3 S11: -0.1747 S12: 0.3941 S13: 0.0863 REMARK 3 S21: -0.4734 S22: -0.1584 S23: -0.2810 REMARK 3 S31: -0.3740 S32: -0.1402 S33: -0.0013 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND RESID 7:21 REMARK 3 ORIGIN FOR THE GROUP (A): 29.8094 8.9211 -6.2973 REMARK 3 T TENSOR REMARK 3 T11: 0.4615 T22: 0.3336 REMARK 3 T33: 0.4180 T12: -0.0264 REMARK 3 T13: 0.1056 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: -0.0387 L22: 0.0850 REMARK 3 L33: 0.1954 L12: -0.2641 REMARK 3 L13: 0.0441 L23: 0.2040 REMARK 3 S TENSOR REMARK 3 S11: 0.3014 S12: -0.6710 S13: 0.1358 REMARK 3 S21: 0.8138 S22: -0.3104 S23: 0.2097 REMARK 3 S31: 0.1804 S32: -0.0738 S33: -0.0012 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND RESID 22:75 REMARK 3 ORIGIN FOR THE GROUP (A): 32.4831 13.7773 -10.9101 REMARK 3 T TENSOR REMARK 3 T11: 0.2937 T22: 0.2674 REMARK 3 T33: 0.3891 T12: 0.0467 REMARK 3 T13: 0.0817 T23: -0.0652 REMARK 3 L TENSOR REMARK 3 L11: 0.4821 L22: 0.6241 REMARK 3 L33: 1.1469 L12: 0.1483 REMARK 3 L13: -0.4669 L23: -0.5806 REMARK 3 S TENSOR REMARK 3 S11: 0.1170 S12: -0.1023 S13: 0.0898 REMARK 3 S21: 0.2698 S22: -0.0597 S23: 0.3159 REMARK 3 S31: -0.1028 S32: -0.0700 S33: -0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND RESID 76:143 REMARK 3 ORIGIN FOR THE GROUP (A): 38.1915 19.5008 -14.9196 REMARK 3 T TENSOR REMARK 3 T11: 0.3292 T22: 0.2735 REMARK 3 T33: 0.3386 T12: 0.0175 REMARK 3 T13: 0.0229 T23: -0.0378 REMARK 3 L TENSOR REMARK 3 L11: 0.2963 L22: 1.2793 REMARK 3 L33: 0.4269 L12: 0.0749 REMARK 3 L13: 0.1033 L23: -0.3795 REMARK 3 S TENSOR REMARK 3 S11: 0.0579 S12: 0.0134 S13: -0.0036 REMARK 3 S21: 0.1152 S22: -0.1346 S23: 0.2657 REMARK 3 S31: -0.2477 S32: -0.1483 S33: 0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND RESID 156:161 REMARK 3 ORIGIN FOR THE GROUP (A): 34.4913 12.5445 -4.0576 REMARK 3 T TENSOR REMARK 3 T11: 0.4479 T22: 0.3392 REMARK 3 T33: 0.3480 T12: -0.0502 REMARK 3 T13: 0.0806 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 0.1034 L22: -0.0341 REMARK 3 L33: -0.0014 L12: 0.0153 REMARK 3 L13: -0.0557 L23: -0.0532 REMARK 3 S TENSOR REMARK 3 S11: 0.2262 S12: -0.6619 S13: -0.0487 REMARK 3 S21: 0.5933 S22: -0.3780 S23: -0.0046 REMARK 3 S31: -0.1372 S32: -0.1273 S33: 0.0002 REMARK 3 REMARK 3 NCS DETAILS. REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 7:18 OR RESSEQ REMARK 3 : 20:56 OR RESSEQ 58:64 OR RESSEQ REMARK 3 : 70:143 OR RESSEQ 145:145 OR RESSEQ REMARK 3 : 147:160 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 7:18 OR RESSEQ REMARK 3 : 20:56 OR RESSEQ 58:64 OR RESSEQ REMARK 3 : 70:143 OR RESSEQ 145:145 OR RESSEQ REMARK 3 : 147:160 ) REMARK 3 ATOM PAIRS NUMBER : 1021 REMARK 3 RMSD : 0.078 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2WN0 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JUL-09. REMARK 100 THE PDBE ID CODE IS EBI-40139. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : SILICON (311) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17976 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.40 REMARK 200 RESOLUTION RANGE LOW (A) : 84.50 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.5 REMARK 200 R MERGE (I) : 0.10 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.70 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.8 REMARK 200 R MERGE FOR SHELL (I) : 0.55 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.70 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1ESO REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.9 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES-NAOH, PH 6.5, 0.2M REMARK 280 ZNSO4, 25% PEG-MME 550 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.27000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.54000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 54.54000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.27000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.33 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2011 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2038 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A -7 REMARK 465 MET A -6 REMARK 465 ALA A -5 REMARK 465 GLY A -4 REMARK 465 MET A -3 REMARK 465 ASN A -2 REMARK 465 ASP A -1 REMARK 465 LYS A 0 REMARK 465 ALA A 1 REMARK 465 SER A 2 REMARK 465 MET A 3 REMARK 465 ASN B -7 REMARK 465 MET B -6 REMARK 465 ALA B -5 REMARK 465 GLY B -4 REMARK 465 MET B -3 REMARK 465 ASN B -2 REMARK 465 ASP B -1 REMARK 465 LYS B 0 REMARK 465 ALA B 1 REMARK 465 SER B 2 REMARK 465 MET B 3 REMARK 465 ASN B 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 LYS A 12 CE NZ REMARK 470 LYS A 23 CE NZ REMARK 470 LYS A 66 CD CE NZ REMARK 470 LYS A 69 CE NZ REMARK 470 LYS A 84 CD CE NZ REMARK 470 LYS B 66 CE NZ REMARK 470 LYS B 69 CD CE NZ REMARK 470 LYS B 84 CE NZ REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 59 46.14 -73.28 REMARK 500 ALA A 73 13.57 54.66 REMARK 500 ASP A 139 106.80 -162.21 REMARK 500 ALA B 73 16.93 59.61 REMARK 500 ASP B 81 67.17 -155.24 REMARK 500 ASP B 139 110.97 -160.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1163 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 144 NE2 REMARK 620 2 HOH B2122 O 129.8 REMARK 620 3 HIS A 144 NE2 87.6 94.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1162 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 79 ND1 REMARK 620 2 HIS A 88 ND1 102.7 REMARK 620 3 ASP A 100 OD1 117.5 96.1 REMARK 620 4 HIS A 97 ND1 98.1 121.1 121.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1163 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 130 NE2 REMARK 620 2 HOH A2102 O 84.4 REMARK 620 3 HOH A2104 O 86.9 171.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1164 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2106 O REMARK 620 2 ASP A 5 OD1 80.3 REMARK 620 3 HIS B 130 NE2 107.5 136.7 REMARK 620 4 HOH A2105 O 102.1 117.1 103.0 REMARK 620 5 ASP A 5 OD2 94.2 59.1 77.7 162.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1162 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 88 ND1 REMARK 620 2 HIS B 79 ND1 104.6 REMARK 620 3 HIS B 97 ND1 125.0 102.7 REMARK 620 4 ASP B 100 OD1 90.1 110.3 122.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B1164 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 135 NE2 REMARK 620 2 HIS B 54 ND1 95.9 REMARK 620 3 HIS B 56 NE2 104.2 130.5 REMARK 620 4 HIS B 79 NE2 152.5 80.8 98.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A1165 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 135 NE2 REMARK 620 2 HIS A 79 NE2 150.6 REMARK 620 3 HIS A 56 NE2 107.8 97.4 REMARK 620 4 HIS A 54 ND1 90.7 84.3 130.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1164 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A1165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B1164 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B1165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1166 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1167 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WN1 RELATED DB: PDB REMARK 900 YERSINIA PSEUDOTUBERCULOSIS SUPEROXIDE DISMUTASE REMARK 900 C WITH BOUND AZIDE REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE BELOW REPRESENTS THE MATURE PROTEIN. DBREF 2WN0 A -7 161 UNP Q66ED7 Q66ED7_YERPS 21 189 DBREF 2WN0 B -7 161 UNP Q66ED7 Q66ED7_YERPS 21 189 SEQRES 1 A 169 ASN MET ALA GLY MET ASN ASP LYS ALA SER MET ASN ASP SEQRES 2 A 169 LYS ALA SER MET THR VAL LYS ILE ASN GLU SER LEU PRO SEQRES 3 A 169 GLN GLY ASN GLY LYS ALA LEU GLY THR VAL THR VAL THR SEQRES 4 A 169 GLU THR ALA TYR GLY LEU LEU PHE THR PRO HIS LEU THR SEQRES 5 A 169 GLY LEU ALA PRO GLY ILE HIS GLY PHE HIS LEU HIS GLU SEQRES 6 A 169 LYS PRO SER CYS ALA PRO GLY MET LYS ASP GLY LYS ALA SEQRES 7 A 169 VAL PRO ALA LEU ALA ALA GLY GLY HIS LEU ASP PRO ASN SEQRES 8 A 169 LYS THR GLY VAL HIS LEU GLY PRO TYR ASN ASP LYS GLY SEQRES 9 A 169 HIS LEU GLY ASP LEU PRO GLY LEU VAL VAL ASN ALA ASP SEQRES 10 A 169 GLY THR ALA THR TYR PRO VAL LEU ALA PRO ARG LEU LYS SEQRES 11 A 169 SER LEU SER GLU VAL LYS GLN HIS ALA LEU MET ILE HIS SEQRES 12 A 169 ALA GLY GLY ASP ASN TYR SER ASP HIS PRO MET PRO LEU SEQRES 13 A 169 GLY GLY GLY GLY ALA ARG MET ALA CYS GLY VAL ILE GLU SEQRES 1 B 169 ASN MET ALA GLY MET ASN ASP LYS ALA SER MET ASN ASP SEQRES 2 B 169 LYS ALA SER MET THR VAL LYS ILE ASN GLU SER LEU PRO SEQRES 3 B 169 GLN GLY ASN GLY LYS ALA LEU GLY THR VAL THR VAL THR SEQRES 4 B 169 GLU THR ALA TYR GLY LEU LEU PHE THR PRO HIS LEU THR SEQRES 5 B 169 GLY LEU ALA PRO GLY ILE HIS GLY PHE HIS LEU HIS GLU SEQRES 6 B 169 LYS PRO SER CYS ALA PRO GLY MET LYS ASP GLY LYS ALA SEQRES 7 B 169 VAL PRO ALA LEU ALA ALA GLY GLY HIS LEU ASP PRO ASN SEQRES 8 B 169 LYS THR GLY VAL HIS LEU GLY PRO TYR ASN ASP LYS GLY SEQRES 9 B 169 HIS LEU GLY ASP LEU PRO GLY LEU VAL VAL ASN ALA ASP SEQRES 10 B 169 GLY THR ALA THR TYR PRO VAL LEU ALA PRO ARG LEU LYS SEQRES 11 B 169 SER LEU SER GLU VAL LYS GLN HIS ALA LEU MET ILE HIS SEQRES 12 B 169 ALA GLY GLY ASP ASN TYR SER ASP HIS PRO MET PRO LEU SEQRES 13 B 169 GLY GLY GLY GLY ALA ARG MET ALA CYS GLY VAL ILE GLU HET ZN A1162 1 HET ZN B1162 1 HET ZN A1163 1 HET ZN B1163 1 HET ZN A1164 1 HET CU A1165 1 HET CU B1164 1 HET MES B1165 12 HET GOL B1166 6 HET GOL B1167 6 HETNAM GOL GLYCEROL HETNAM ZN ZINC ION HETNAM CU COPPER (II) ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 3 GOL 2(C3 H8 O3) FORMUL 4 ZN 5(ZN 2+) FORMUL 5 CU 2(CU 2+) FORMUL 6 MES C6 H13 N O4 S FORMUL 7 HOH *233(H2 O1) HELIX 1 1 SER A 123 VAL A 127 5 5 HELIX 2 2 SER B 123 VAL B 127 5 5 SHEET 1 AA 4 SER A 8 VAL A 11 0 SHEET 2 AA 4 VAL A 28 THR A 31 -1 O VAL A 28 N VAL A 11 SHEET 3 AA 4 LEU A 38 PRO A 41 -1 O LEU A 38 N THR A 31 SHEET 4 AA 4 VAL A 116 LEU A 117 -1 O VAL A 116 N PHE A 39 SHEET 1 AB 4 ASN A 14 GLU A 15 0 SHEET 2 AB 4 ARG A 154 CYS A 157 -1 O CYS A 157 N ASN A 14 SHEET 3 AB 4 ALA A 131 HIS A 135 -1 O ILE A 134 N MET A 155 SHEET 4 AB 4 HIS A 54 HIS A 56 -1 O HIS A 54 N MET A 133 SHEET 1 BA 4 SER B 8 VAL B 11 0 SHEET 2 BA 4 VAL B 28 THR B 31 -1 O VAL B 28 N VAL B 11 SHEET 3 BA 4 LEU B 38 PRO B 41 -1 O LEU B 38 N THR B 31 SHEET 4 BA 4 VAL B 116 LEU B 117 -1 O VAL B 116 N PHE B 39 SHEET 1 BB 4 ASN B 14 GLU B 15 0 SHEET 2 BB 4 ARG B 154 CYS B 157 -1 O CYS B 157 N ASN B 14 SHEET 3 BB 4 ALA B 131 HIS B 135 -1 O ILE B 134 N MET B 155 SHEET 4 BB 4 HIS B 54 HIS B 56 -1 O HIS B 54 N MET B 133 SSBOND 1 CYS A 61 CYS A 157 1555 1555 2.04 SSBOND 2 CYS B 61 CYS B 157 1555 1555 2.03 LINK ZN ZN A1162 ND1 HIS A 79 1555 1555 2.26 LINK ZN ZN A1162 ND1 HIS A 88 1555 1555 2.17 LINK ZN ZN A1162 OD1 ASP A 100 1555 1555 2.05 LINK ZN ZN A1162 ND1 HIS A 97 1555 1555 2.26 LINK ZN ZN A1163 NE2 HIS A 130 1555 1555 2.23 LINK ZN ZN A1163 O HOH A2102 1555 1555 2.41 LINK ZN ZN A1163 O HOH A2104 1555 1555 2.38 LINK ZN ZN A1164 O HOH A2106 1555 1555 2.37 LINK ZN ZN A1164 OD1 ASP A 5 1555 1555 2.22 LINK ZN ZN A1164 NE2 HIS B 130 1555 3664 2.09 LINK ZN ZN A1164 O HOH A2105 1555 1555 2.31 LINK ZN ZN A1164 OD2 ASP A 5 1555 1555 2.25 LINK CU CU A1165 NE2 HIS A 56 1555 1555 2.33 LINK CU CU A1165 NE2 HIS A 135 1555 1555 2.15 LINK CU CU A1165 ND1 HIS A 54 1555 1555 2.29 LINK CU CU A1165 NE2 HIS A 79 1555 1555 2.15 LINK ZN ZN B1162 ND1 HIS B 97 1555 1555 2.34 LINK ZN ZN B1162 OD1 ASP B 100 1555 1555 2.01 LINK ZN ZN B1162 ND1 HIS B 79 1555 1555 2.13 LINK ZN ZN B1162 ND1 HIS B 88 1555 1555 2.22 LINK ZN ZN B1163 NE2 HIS B 144 1555 1555 2.27 LINK ZN ZN B1163 NE2 HIS A 144 1555 6664 2.17 LINK ZN ZN B1163 O HOH B2122 1555 1555 2.33 LINK CU CU B1164 NE2 HIS B 79 1555 1555 2.25 LINK CU CU B1164 NE2 HIS B 56 1555 1555 2.22 LINK CU CU B1164 ND1 HIS B 54 1555 1555 2.26 LINK CU CU B1164 NE2 HIS B 135 1555 1555 2.18 CISPEP 1 HIS A 144 PRO A 145 0 0.77 CISPEP 2 HIS B 144 PRO B 145 0 6.43 SITE 1 AC1 4 HIS A 79 HIS A 88 HIS A 97 ASP A 100 SITE 1 AC2 4 HIS B 79 HIS B 88 HIS B 97 ASP B 100 SITE 1 AC3 4 HIS A 130 HOH A2102 HOH A2103 HOH A2104 SITE 1 AC4 5 HIS A 144 HIS B 144 HOH B2119 HOH B2120 SITE 2 AC4 5 HOH B2122 SITE 1 AC5 5 ASN A 4 ASP A 5 HOH A2105 HOH A2106 SITE 2 AC5 5 HIS B 130 SITE 1 AC6 4 HIS A 54 HIS A 56 HIS A 79 HIS A 135 SITE 1 AC7 5 HIS B 54 HIS B 56 HIS B 79 HIS B 135 SITE 2 AC7 5 HOH B2096 SITE 1 AC8 9 ASN A 140 THR B 29 HIS B 42 THR B 113 SITE 2 AC8 9 PRO B 115 GOL B1167 HOH B2037 HOH B2123 SITE 3 AC8 9 HOH B2124 SITE 1 AC9 5 ALA B 108 ASP B 109 GLY B 110 HOH B2125 SITE 2 AC9 5 HOH B2126 SITE 1 BC1 6 LYS B 6 THR B 31 LEU B 38 MES B1165 SITE 2 BC1 6 HOH B2124 HOH B2127 CRYST1 97.546 97.546 81.810 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010252 0.005919 0.000000 0.00000 SCALE2 0.000000 0.011837 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012223 0.00000 MTRIX1 1 0.400810 0.680640 0.613260 30.46413 1 MTRIX2 1 0.696470 -0.661250 0.278700 -0.22247 1 MTRIX3 1 0.595210 0.315410 -0.739080 -70.51259 1