HEADER OXIDOREDUCTASE 06-JUL-09 2WN1 OBSLTE 03-NOV-10 2WN1 2WWN TITLE YERSINIA PSEUDOTUBERCULOSIS SUPEROXIDE DISMUTASE C WITH TITLE 2 BOUND AZIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [CU-ZN]; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SUPEROXIDE DISMUTASE C; COMPND 5 EC: 1.15.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PSEUDOTUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 633; SOURCE 4 STRAIN: IP32953; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(STAR); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX-6P KEYWDS ZINC, COPPER, METAL-BINDING, OXIDOREDUCTASE, SUPEROXIDE KEYWDS 2 DISMUTASE, YERSINIA PSEUDOTUBERCULOSIS EXPDTA X-RAY DIFFRACTION AUTHOR A.K.BASAK,M.L.DUFFIELD,C.E.NAYLOR,J.HUYET,R.W.TITBALL REVDAT 2 03-NOV-10 2WN1 1 OBSLTE REVDAT 1 21-JUL-09 2WN1 0 JRNL AUTH J.HUYET,C.E.NAYLOR,R.W.TITBALL,H.BULLIFENT, JRNL AUTH 2 N.WALKER,H.E.JONES,M.L.DUFFIED,A.K.BASAK JRNL TITL CRYSTAL STRUCTURE OF THE YERSINIA JRNL TITL 2 PSEUDOTUBERCULOSIS SUPEROXIDE DISMUTASE (SODC) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.600 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.812 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.95 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.94 REMARK 3 NUMBER OF REFLECTIONS : 13886 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.1868 REMARK 3 R VALUE (WORKING SET) : 0.1849 REMARK 3 FREE R VALUE : 0.2250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 698 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.8177 - 4.4446 1.00 2774 127 0.1662 0.1880 REMARK 3 2 4.4446 - 3.5284 1.00 2630 135 0.1589 0.1936 REMARK 3 3 3.5284 - 3.0825 1.00 2583 165 0.1869 0.2492 REMARK 3 4 3.0825 - 2.8008 1.00 2604 137 0.1934 0.2771 REMARK 3 5 2.8008 - 2.6000 1.00 2597 134 0.2211 0.2552 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.325 REMARK 3 B_SOL : 41.604 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.36 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.88 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.9 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.7705 REMARK 3 B22 (A**2) : 5.7705 REMARK 3 B33 (A**2) : -11.5409 REMARK 3 B12 (A**2) : -0.0000 REMARK 3 B13 (A**2) : -0.0000 REMARK 3 B23 (A**2) : -0.0000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2285 REMARK 3 ANGLE : 0.739 3115 REMARK 3 CHIRALITY : 0.045 350 REMARK 3 PLANARITY : 0.007 417 REMARK 3 DIHEDRAL : 14.253 791 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 47.1008 -10.3812 8.2781 REMARK 3 T TENSOR REMARK 3 T11: 0.4021 T22: 0.3681 REMARK 3 T33: 0.2395 T12: -0.0747 REMARK 3 T13: 0.0335 T23: -0.0292 REMARK 3 L TENSOR REMARK 3 L11: 0.8811 L22: 1.8696 REMARK 3 L33: 2.4364 L12: -0.2801 REMARK 3 L13: 0.0408 L23: -0.2493 REMARK 3 S TENSOR REMARK 3 S11: 0.0718 S12: -0.1844 S13: 0.0642 REMARK 3 S21: 0.2419 S22: -0.2066 S23: 0.0705 REMARK 3 S31: -0.1947 S32: 0.0374 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 33.8697 -16.4545 -14.6082 REMARK 3 T TENSOR REMARK 3 T11: 0.3403 T22: 0.2876 REMARK 3 T33: 0.3966 T12: -0.0461 REMARK 3 T13: -0.0815 T23: -0.0496 REMARK 3 L TENSOR REMARK 3 L11: 1.4031 L22: 1.3521 REMARK 3 L33: 2.3664 L12: -0.2332 REMARK 3 L13: -0.4118 L23: 0.3283 REMARK 3 S TENSOR REMARK 3 S11: -0.0400 S12: 0.0375 S13: -0.0436 REMARK 3 S21: -0.2356 S22: -0.1263 S23: 0.5010 REMARK 3 S31: 0.1828 S32: -0.1765 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 7:11 OR RESSEQ REMARK 3 : 13:18 OR RESSEQ 20:41 OR RESSEQ REMARK 3 : 43:56 OR RESSEQ 58:64 OR RESSEQ REMARK 3 : 78:94 OR RESSEQ 96:143 OR RESSEQ REMARK 3 : 145:145 OR RESSEQ 147:160 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 7:11 OR RESSEQ REMARK 3 : 13:18 OR RESSEQ 20:41 OR RESSEQ REMARK 3 : 43:56 OR RESSEQ 58:64 OR RESSEQ REMARK 3 : 78:94 OR RESSEQ 96:143 OR RESSEQ REMARK 3 : 145:145 OR RESSEQ 147:160 ) REMARK 3 ATOM PAIRS NUMBER : 945 REMARK 3 RMSD : 0.075 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2WN1 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JUL-09. REMARK 100 THE PDBE ID CODE IS EBI-40188. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : SILICON (311) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13914 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.60 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.7 REMARK 200 R MERGE (I) : 0.10 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.80 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.9 REMARK 200 R MERGE FOR SHELL (I) : 0.60 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.90 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1ESO REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.8 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES-NAOH, PH 6.5, 0.2M REMARK 280 ZNSO4, 25% PEG-MME 550, 10MM NA AZIDE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.23867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.47733 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 54.47733 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.23867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -97.58 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2026 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A -7 REMARK 465 MET A -6 REMARK 465 ALA A -5 REMARK 465 GLY A -4 REMARK 465 MET A -3 REMARK 465 ASN A -2 REMARK 465 ASP A -1 REMARK 465 LYS A 0 REMARK 465 ALA A 1 REMARK 465 SER A 2 REMARK 465 MET A 3 REMARK 465 ASN B -7 REMARK 465 MET B -6 REMARK 465 ALA B -5 REMARK 465 GLY B -4 REMARK 465 MET B -3 REMARK 465 ASN B -2 REMARK 465 ASP B -1 REMARK 465 LYS B 0 REMARK 465 ALA B 1 REMARK 465 SER B 2 REMARK 465 MET B 3 REMARK 465 ASN B 4 REMARK 465 ASP B 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 LYS A 23 CE NZ REMARK 470 LYS A 58 CE NZ REMARK 470 LYS A 66 CG CD CE NZ REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 LYS A 84 CD CE NZ REMARK 470 GLU A 161 CG CD OE1 OE2 REMARK 470 LYS B 6 CG CD CE NZ REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 LYS B 58 CE NZ REMARK 470 LYS B 66 CG CD CE NZ REMARK 470 ASP B 67 CG OD1 OD2 REMARK 470 LYS B 69 CG CD CE NZ REMARK 470 LYS B 84 CD CE NZ REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 5 125.87 72.34 REMARK 500 PRO A 59 46.78 -74.73 REMARK 500 ASP B 139 111.26 -160.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1163 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 97 ND1 REMARK 620 2 HIS B 88 ND1 123.1 REMARK 620 3 HIS B 79 ND1 95.6 106.7 REMARK 620 4 ASP B 100 OD1 125.5 91.4 114.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1163 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 79 ND1 REMARK 620 2 HIS A 88 ND1 96.4 REMARK 620 3 ASP A 100 OD1 122.1 97.2 REMARK 620 4 HIS A 97 ND1 92.9 118.2 127.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1164 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 130 NE2 REMARK 620 2 HOH A2078 O 87.2 REMARK 620 3 HOH A2079 O 170.4 89.0 REMARK 620 4 HOH A2081 O 95.5 95.5 76.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1165 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 144 NE2 REMARK 620 2 HIS B 144 NE2 76.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1166 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 130 NE2 REMARK 620 2 HOH A2085 O 107.2 REMARK 620 3 ASP A 5 OD2 103.3 149.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B1162 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 135 NE2 REMARK 620 2 HIS B 54 ND1 97.3 REMARK 620 3 HIS B 56 NE2 102.6 131.6 REMARK 620 4 HIS B 79 NE2 156.3 81.7 95.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A1162 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 135 NE2 REMARK 620 2 HIS A 54 ND1 90.7 REMARK 620 3 HIS A 56 NE2 110.2 130.8 REMARK 620 4 HIS A 79 NE2 145.0 87.4 97.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A1162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B1162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1164 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1166 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B1164 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZI B1165 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZI B1166 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WN0 RELATED DB: PDB REMARK 900 YERSINIA PSEUDOTUBERCULOSIS SUPEROXIDE DISMUTASE REMARK 900 C REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE BELOW REPRESENTS THE MATURE PROTEIN. DBREF 2WN1 A -7 161 UNP Q66ED7 Q66ED7_YERPS 21 189 DBREF 2WN1 B -7 161 UNP Q66ED7 Q66ED7_YERPS 21 189 SEQRES 1 A 169 ASN MET ALA GLY MET ASN ASP LYS ALA SER MET ASN ASP SEQRES 2 A 169 LYS ALA SER MET THR VAL LYS ILE ASN GLU SER LEU PRO SEQRES 3 A 169 GLN GLY ASN GLY LYS ALA LEU GLY THR VAL THR VAL THR SEQRES 4 A 169 GLU THR ALA TYR GLY LEU LEU PHE THR PRO HIS LEU THR SEQRES 5 A 169 GLY LEU ALA PRO GLY ILE HIS GLY PHE HIS LEU HIS GLU SEQRES 6 A 169 LYS PRO SER CYS ALA PRO GLY MET LYS ASP GLY LYS ALA SEQRES 7 A 169 VAL PRO ALA LEU ALA ALA GLY GLY HIS LEU ASP PRO ASN SEQRES 8 A 169 LYS THR GLY VAL HIS LEU GLY PRO TYR ASN ASP LYS GLY SEQRES 9 A 169 HIS LEU GLY ASP LEU PRO GLY LEU VAL VAL ASN ALA ASP SEQRES 10 A 169 GLY THR ALA THR TYR PRO VAL LEU ALA PRO ARG LEU LYS SEQRES 11 A 169 SER LEU SER GLU VAL LYS GLN HIS ALA LEU MET ILE HIS SEQRES 12 A 169 ALA GLY GLY ASP ASN TYR SER ASP HIS PRO MET PRO LEU SEQRES 13 A 169 GLY GLY GLY GLY ALA ARG MET ALA CYS GLY VAL ILE GLU SEQRES 1 B 169 ASN MET ALA GLY MET ASN ASP LYS ALA SER MET ASN ASP SEQRES 2 B 169 LYS ALA SER MET THR VAL LYS ILE ASN GLU SER LEU PRO SEQRES 3 B 169 GLN GLY ASN GLY LYS ALA LEU GLY THR VAL THR VAL THR SEQRES 4 B 169 GLU THR ALA TYR GLY LEU LEU PHE THR PRO HIS LEU THR SEQRES 5 B 169 GLY LEU ALA PRO GLY ILE HIS GLY PHE HIS LEU HIS GLU SEQRES 6 B 169 LYS PRO SER CYS ALA PRO GLY MET LYS ASP GLY LYS ALA SEQRES 7 B 169 VAL PRO ALA LEU ALA ALA GLY GLY HIS LEU ASP PRO ASN SEQRES 8 B 169 LYS THR GLY VAL HIS LEU GLY PRO TYR ASN ASP LYS GLY SEQRES 9 B 169 HIS LEU GLY ASP LEU PRO GLY LEU VAL VAL ASN ALA ASP SEQRES 10 B 169 GLY THR ALA THR TYR PRO VAL LEU ALA PRO ARG LEU LYS SEQRES 11 B 169 SER LEU SER GLU VAL LYS GLN HIS ALA LEU MET ILE HIS SEQRES 12 B 169 ALA GLY GLY ASP ASN TYR SER ASP HIS PRO MET PRO LEU SEQRES 13 B 169 GLY GLY GLY GLY ALA ARG MET ALA CYS GLY VAL ILE GLU HET CU A1162 1 HET CU B1162 1 HET ZN A1163 1 HET ZN A1164 1 HET ZN A1165 1 HET ZN B1163 1 HET ZN A1166 1 HET MES B1164 12 HET AZI B1165 3 HET AZI B1166 3 HETNAM AZI AZIDE ION HETNAM ZN ZINC ION HETNAM CU COPPER (II) ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 3 AZI 2(N3 1-) FORMUL 4 ZN 5(ZN 2+) FORMUL 5 CU 2(CU 2+) FORMUL 6 MES C6 H13 N O4 S FORMUL 7 HOH *167(H2 O1) HELIX 1 1 ALA A 73 GLY A 77 5 5 HELIX 2 2 SER A 123 VAL A 127 5 5 HELIX 3 3 MET A 146 GLY A 151 5 6 HELIX 4 4 ALA B 73 GLY B 77 5 5 HELIX 5 5 SER B 123 VAL B 127 5 5 HELIX 6 6 MET B 146 GLY B 151 5 6 SHEET 1 AA 7 PHE A 53 HIS A 56 0 SHEET 2 AA 7 HIS A 130 HIS A 135 -1 O ALA A 131 N HIS A 56 SHEET 3 AA 7 ARG A 154 ILE A 160 -1 N MET A 155 O ILE A 134 SHEET 4 AA 7 SER A 8 SER A 16 -1 O ASN A 14 N CYS A 157 SHEET 5 AA 7 ASN A 21 THR A 33 -1 N GLY A 22 O GLU A 15 SHEET 6 AA 7 GLY A 36 LEU A 43 -1 O GLY A 36 N THR A 33 SHEET 7 AA 7 VAL A 116 ALA A 118 -1 O VAL A 116 N PHE A 39 SHEET 1 AB 2 GLY A 49 HIS A 51 0 SHEET 2 AB 2 LEU A 104 VAL A 106 -1 O LEU A 104 N HIS A 51 SHEET 1 AC 2 GLY A 64 LYS A 66 0 SHEET 2 AC 2 LYS A 69 VAL A 71 -1 O LYS A 69 N LYS A 66 SHEET 1 BA 7 PHE B 53 HIS B 56 0 SHEET 2 BA 7 HIS B 130 HIS B 135 -1 O ALA B 131 N HIS B 56 SHEET 3 BA 7 ARG B 154 ILE B 160 -1 N MET B 155 O ILE B 134 SHEET 4 BA 7 SER B 8 SER B 16 -1 O ASN B 14 N CYS B 157 SHEET 5 BA 7 ASN B 21 THR B 33 -1 N GLY B 22 O GLU B 15 SHEET 6 BA 7 GLY B 36 LEU B 43 -1 O GLY B 36 N THR B 33 SHEET 7 BA 7 VAL B 116 ALA B 118 -1 O VAL B 116 N PHE B 39 SHEET 1 BB 2 GLY B 49 HIS B 51 0 SHEET 2 BB 2 LEU B 104 VAL B 106 -1 O LEU B 104 N HIS B 51 SHEET 1 BC 2 GLY B 64 LYS B 66 0 SHEET 2 BC 2 LYS B 69 VAL B 71 -1 O LYS B 69 N LYS B 66 SSBOND 1 CYS A 61 CYS A 157 1555 1555 2.03 SSBOND 2 CYS B 61 CYS B 157 1555 1555 2.03 LINK CU CU A1162 NE2 HIS A 135 1555 1555 2.24 LINK CU CU A1162 NE2 HIS A 79 1555 1555 2.22 LINK CU CU A1162 NE2 HIS A 56 1555 1555 2.33 LINK CU CU A1162 ND1 HIS A 54 1555 1555 2.38 LINK ZN ZN A1163 ND1 HIS A 79 1555 1555 2.33 LINK ZN ZN A1163 ND1 HIS A 88 1555 1555 2.33 LINK ZN ZN A1163 OD1 ASP A 100 1555 1555 2.13 LINK ZN ZN A1163 ND1 HIS A 97 1555 1555 2.38 LINK ZN ZN A1164 NE2 HIS A 130 1555 1555 2.26 LINK ZN ZN A1164 O HOH A2078 1555 1555 2.44 LINK ZN ZN A1164 O HOH A2079 1555 1555 2.46 LINK ZN ZN A1164 O HOH A2081 1555 1555 2.41 LINK ZN ZN A1165 NE2 HIS B 144 1555 4655 2.36 LINK ZN ZN A1165 NE2 HIS A 144 1555 1555 2.22 LINK ZN ZN A1166 O HOH A2085 1555 1555 2.36 LINK ZN ZN A1166 OD2 ASP A 5 1555 1555 2.08 LINK ZN ZN A1166 NE2 HIS B 130 1555 2545 2.13 LINK CU CU B1162 ND1 HIS B 54 1555 1555 2.34 LINK CU CU B1162 NE2 HIS B 56 1555 1555 2.41 LINK CU CU B1162 NE2 HIS B 79 1555 1555 2.24 LINK CU CU B1162 NE2 HIS B 135 1555 1555 2.27 LINK ZN ZN B1163 OD1 ASP B 100 1555 1555 2.16 LINK ZN ZN B1163 ND1 HIS B 79 1555 1555 2.27 LINK ZN ZN B1163 ND1 HIS B 88 1555 1555 2.25 LINK ZN ZN B1163 ND1 HIS B 97 1555 1555 2.38 CISPEP 1 HIS A 144 PRO A 145 0 3.60 CISPEP 2 HIS B 144 PRO B 145 0 2.55 SITE 1 AC1 4 HIS A 54 HIS A 56 HIS A 79 HIS A 135 SITE 1 AC2 4 HIS B 54 HIS B 56 HIS B 79 HIS B 135 SITE 1 AC3 4 HIS A 79 HIS A 88 HIS A 97 ASP A 100 SITE 1 AC4 5 HIS A 130 HOH A2078 HOH A2079 HOH A2080 SITE 2 AC4 5 HOH A2081 SITE 1 AC5 4 HIS A 144 HOH A2083 HOH A2084 HIS B 144 SITE 1 AC6 4 HIS B 79 HIS B 88 HIS B 97 ASP B 100 SITE 1 AC7 4 ASN A 4 ASP A 5 HOH A2085 HIS B 130 SITE 1 AC8 6 ASN A 140 THR B 29 HIS B 42 THR B 113 SITE 2 AC8 6 PRO B 115 HOH B2025 SITE 1 AC9 1 THR B 31 SITE 1 BC1 1 LEU B 46 CRYST1 96.561 96.561 81.716 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010356 0.005979 0.000000 0.00000 SCALE2 0.000000 0.011958 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012238 0.00000 MTRIX1 1 0.401830 -0.672470 -0.621540 13.36260 1 MTRIX2 1 -0.686610 -0.670360 0.281400 6.77134 1 MTRIX3 1 -0.605890 0.313680 -0.731090 23.20671 1