HEADER HYDROLASE 20-JUL-09 2WNX TITLE 3B' CARBOHYDRATE-BINDING MODULE FROM THE CEL9V GLYCOSIDE HYDROLASE TITLE 2 FROM CLOSTRIDIUM THERMOCELLUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSIDE HYDROLASE, FAMILY 9; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CARBOHYDRATE-BINDING MODULE3B', RESIDUES 731-888; COMPND 5 SYNONYM: CEL9V GLYCOSIDE HYDROLASE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM; SOURCE 3 ORGANISM_TAXID: 1515; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET-28A KEYWDS CELLULOSE DEGRADATION, HYDROLASE, GLYCOSIDE HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.PETKUN,S.JINDOU,L.J.W.SHIMON,E.A.BAYER,R.LAMED,F.FROLOW REVDAT 3 20-DEC-23 2WNX 1 REMARK LINK REVDAT 2 17-APR-13 2WNX 1 SOURCE JRNL REMARK VERSN REVDAT 2 2 1 DBREF SEQADV HELIX SHEET REVDAT 2 3 1 MASTER REVDAT 1 29-DEC-09 2WNX 0 JRNL AUTH S.PETKUN,S.JINDOU,L.J.W.SHIMON,E.A.BAYER,R.LAMED,F.FROLOW JRNL TITL STRUCTURE OF A FAMILY 3B' CARBOHYDRATE-BINDING MODULE FROM JRNL TITL 2 THE CEL9V GLYCOSIDE HYDROLASE FROM CLOSTRIDIUM THERMOCELLUM: JRNL TITL 3 STRUCTURAL DIVERSITY AND IMPLICATIONS FOR CARBOHYDRATE JRNL TITL 4 BINDING JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 66 33 2010 JRNL REFN ISSN 0907-4449 JRNL PMID 20057047 JRNL DOI 10.1107/S0907444909043030 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.JINDOU,Q.XU,R.KENIG,M.SHULMAN,Y.SHOHAM,E.A.BAYER,R.LAMED REMARK 1 TITL NOVEL ARCHITECTURE OF FAMILY-9 GLYCOSIDE HYDROLASES REMARK 1 TITL 2 IDENTIFIED IN CELLULOSOMAL ENZYMES OF ACETIVIBRIO REMARK 1 TITL 3 CELLULOLYTICUS AND CLOSTRIDIUM THERMOCELLUM. REMARK 1 REF FEMS MICROBIOL.LETT. V. 254 308 2006 REMARK 1 REFN ISSN 0378-1097 REMARK 1 PMID 16445761 REMARK 1 DOI 10.1111/J.1574-6968.2005.00040.X REMARK 2 REMARK 2 RESOLUTION. 1.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 50547 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.121 REMARK 3 R VALUE (WORKING SET) : 0.120 REMARK 3 FREE R VALUE : 0.154 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2700 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.31 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.34 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3053 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.1910 REMARK 3 BIN FREE R VALUE SET COUNT : 161 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1195 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 349 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.25000 REMARK 3 B22 (A**2) : 0.25000 REMARK 3 B33 (A**2) : -0.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.034 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.037 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.019 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.011 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1295 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 842 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1765 ; 2.044 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2072 ; 1.543 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 170 ; 7.360 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 59 ;32.020 ;25.593 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 212 ;11.166 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;18.519 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 192 ; 0.138 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1496 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 256 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 819 ; 3.938 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 337 ; 1.169 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1329 ; 5.203 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 476 ; 7.234 ; 7.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 436 ;10.245 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2137 ; 2.800 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 162 REMARK 3 ORIGIN FOR THE GROUP (A): 11.6240 23.6560 14.6880 REMARK 3 T TENSOR REMARK 3 T11: 0.0280 T22: 0.0106 REMARK 3 T33: 0.0321 T12: -0.0067 REMARK 3 T13: -0.0098 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.2779 L22: 0.5153 REMARK 3 L33: 0.5397 L12: -0.1355 REMARK 3 L13: -0.0742 L23: 0.4053 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: -0.0101 S13: 0.0092 REMARK 3 S21: 0.0453 S22: -0.0277 S23: 0.0003 REMARK 3 S31: 0.0163 S32: 0.0027 S33: 0.0275 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS U VALUES WITH TLS ADDED DISORDERED REGIONS WERE MODELED REMARK 3 STEREOCHEMICALLY REMARK 4 REMARK 4 2WNX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1290040486. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9756 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57111 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 48.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.860 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1NBC REMARK 200 REMARK 200 REMARK: MONOMER A REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M TRI REMARK 280 -SODIUM CITRATE DIHYDRATE PH 5.6, 30% W/V POLYETHYLENE GLYCOL REMARK 280 4000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.25050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.06450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.06450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.62525 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.06450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.06450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.87575 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.06450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.06450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 20.62525 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.06450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.06450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 61.87575 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 41.25050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -124.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 PRO A 3 REMARK 465 SER A 4 REMARK 465 GLN A 5 REMARK 465 LEU A 163 REMARK 465 GLU A 164 REMARK 465 HIS A 165 REMARK 465 HIS A 166 REMARK 465 HIS A 167 REMARK 465 HIS A 168 REMARK 465 HIS A 169 REMARK 465 HIS A 170 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2140 O HOH A 2279 1.49 REMARK 500 O HOH A 2161 O HOH A 2326 1.60 REMARK 500 CD ARG A 104 O HOH A 2121 1.93 REMARK 500 O HOH A 2320 O HOH A 2321 2.08 REMARK 500 O HOH A 2003 O HOH A 2005 2.15 REMARK 500 O HOH A 2009 O HOH A 2317 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2122 O HOH A 2140 5545 1.63 REMARK 500 O HOH A 2063 O HOH A 2074 4454 1.99 REMARK 500 O HOH A 2286 O HOH A 2315 5555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 23 -110.99 -118.26 REMARK 500 ASN A 85 76.40 -116.29 REMARK 500 MET A 136 43.03 -106.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 109 10.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2011 DISTANCE = 8.03 ANGSTROMS REMARK 525 HOH A2012 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A2026 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A2027 DISTANCE = 8.00 ANGSTROMS REMARK 525 HOH A2031 DISTANCE = 7.47 ANGSTROMS REMARK 525 HOH A2034 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH A2036 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A2066 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH A2067 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH A2070 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A2075 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A2076 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A2077 DISTANCE = 7.84 ANGSTROMS REMARK 525 HOH A2156 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A2164 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A2170 DISTANCE = 6.63 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1163 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 55 O REMARK 620 2 THR A 55 OG1 74.9 REMARK 620 3 ASP A 57 OD2 81.5 129.0 REMARK 620 4 ASP A 57 OD1 79.4 80.3 51.1 REMARK 620 5 ASP A 125 O 147.8 135.8 82.7 111.1 REMARK 620 6 ASP A 128 OD1 144.9 70.2 119.0 91.9 66.9 REMARK 620 7 ASP A 129 OD1 83.4 72.3 148.4 150.7 96.0 88.6 REMARK 620 8 HOH A2271 O 73.6 136.5 74.1 121.7 75.1 136.7 75.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1164 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1166 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1167 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WO4 RELATED DB: PDB REMARK 900 3B' CARBOHYDRATE-BINDING MODULE FROM THE CEL9V GLYCOSIDE HYDROLASE REMARK 900 FROM CLOSTRIDIUM THERMOCELLUM, IN-HOUSE DATA REMARK 900 RELATED ID: 2WOB RELATED DB: PDB REMARK 900 3B' CARBOHYDRATE-BINDING MODULE FROM THE CEL9V GLYCOSIDE HYDROLASE REMARK 900 FROM CLOSTRIDIUM THERMOCELLUM. ORTHORHOMBIC STRUCTURE DBREF 2WNX A 2 159 UNP A3DJ30 A3DJ30_CLOTH 731 888 SEQADV 2WNX MET A 1 UNP A3DJ30 EXPRESSION TAG SEQADV 2WNX ALA A 160 UNP A3DJ30 EXPRESSION TAG SEQADV 2WNX ALA A 161 UNP A3DJ30 EXPRESSION TAG SEQADV 2WNX ALA A 162 UNP A3DJ30 EXPRESSION TAG SEQADV 2WNX LEU A 163 UNP A3DJ30 EXPRESSION TAG SEQADV 2WNX GLU A 164 UNP A3DJ30 EXPRESSION TAG SEQADV 2WNX HIS A 165 UNP A3DJ30 EXPRESSION TAG SEQADV 2WNX HIS A 166 UNP A3DJ30 EXPRESSION TAG SEQADV 2WNX HIS A 167 UNP A3DJ30 EXPRESSION TAG SEQADV 2WNX HIS A 168 UNP A3DJ30 EXPRESSION TAG SEQADV 2WNX HIS A 169 UNP A3DJ30 EXPRESSION TAG SEQADV 2WNX HIS A 170 UNP A3DJ30 EXPRESSION TAG SEQRES 1 A 170 MET ASP PRO SER GLN THR PRO ASP ALA ASN ALA SER ILE SEQRES 2 A 170 SER VAL SER TYR LYS CYS GLY VAL LYS ASP GLY THR LYS SEQRES 3 A 170 ASN THR ILE ARG ALA THR ILE ASN ILE LYS ASN THR GLY SEQRES 4 A 170 THR THR PRO VAL ASN LEU SER ASP ILE LYS VAL ARG TYR SEQRES 5 A 170 TRP PHE THR SER ASP GLY ASN GLU GLN ASN ASN PHE VAL SEQRES 6 A 170 CYS ASP TYR ALA ALA PHE GLY THR ASP LYS VAL LYS GLY SEQRES 7 A 170 ILE VAL LYS LYS ILE GLU ASN SER VAL PRO GLY ALA ASP SEQRES 8 A 170 THR TYR CYS GLU ILE SER PHE THR GLU ASP ALA GLY ARG SEQRES 9 A 170 LEU ALA PRO GLY GLY SER THR GLY THR ILE PRO PHE ARG SEQRES 10 A 170 ILE GLU GLY ALA ALA GLU TYR ASP GLN THR ASP ASP TYR SEQRES 11 A 170 SER TYR ASN SER GLU MET SER ASP ASP PHE GLY ASP ASN SEQRES 12 A 170 THR LYS ILE THR ALA TYR ILE LYS ASP LYS LEU LYS TYR SEQRES 13 A 170 GLY VAL GLU ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS SEQRES 14 A 170 HIS HET CA A1163 1 HET SO4 A1164 5 HET SO4 A1165 5 HET SO4 A1166 5 HET FMT A1167 3 HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION HETNAM FMT FORMIC ACID FORMUL 2 CA CA 2+ FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 FMT C H2 O2 FORMUL 7 HOH *349(H2 O) HELIX 1 1 THR A 6 ALA A 11 1 6 HELIX 2 2 GLY A 72 ASP A 74 5 3 HELIX 3 3 ASP A 125 ASP A 129 5 5 HELIX 4 4 ASN A 133 SER A 137 5 5 SHEET 1 AA 4 ILE A 13 CYS A 19 0 SHEET 2 AA 4 THR A 28 ASN A 37 -1 O THR A 32 N LYS A 18 SHEET 3 AA 4 ILE A 114 GLY A 120 -1 O ILE A 114 N ILE A 33 SHEET 4 AA 4 ASN A 62 CYS A 66 -1 O ASN A 63 N GLU A 119 SHEET 1 AB 2 VAL A 43 ASN A 44 0 SHEET 2 AB 2 ARG A 104 LEU A 105 -1 O LEU A 105 N VAL A 43 SHEET 1 AC 5 VAL A 76 VAL A 87 0 SHEET 2 AC 5 ALA A 90 PHE A 98 -1 O ALA A 90 N VAL A 87 SHEET 3 AC 5 ILE A 48 PHE A 54 -1 O VAL A 50 N ILE A 96 SHEET 4 AC 5 THR A 147 ILE A 150 -1 O THR A 147 N ARG A 51 SHEET 5 AC 5 LYS A 153 TYR A 156 -1 O LYS A 153 N ILE A 150 LINK O THR A 55 CA CA A1163 1555 1555 2.42 LINK OG1 THR A 55 CA CA A1163 1555 1555 2.47 LINK OD2 ASP A 57 CA CA A1163 1555 1555 2.46 LINK OD1 ASP A 57 CA CA A1163 1555 1555 2.57 LINK O ASP A 125 CA CA A1163 1555 1555 2.37 LINK OD1 ASP A 128 CA CA A1163 1555 1555 2.37 LINK OD1 ASP A 129 CA CA A1163 1555 1555 2.43 LINK CA CA A1163 O HOH A2271 1555 1555 2.53 SITE 1 AC1 6 THR A 55 ASP A 57 ASP A 125 ASP A 128 SITE 2 AC1 6 ASP A 129 HOH A2271 SITE 1 AC2 12 LYS A 22 ASP A 23 GLY A 24 THR A 25 SITE 2 AC2 12 LYS A 26 ASN A 27 THR A 28 ARG A 30 SITE 3 AC2 12 GLY A 58 HOH A2062 HOH A2080 HOH A2081 SITE 1 AC3 4 LYS A 36 HOH A2251 HOH A2346 HOH A2347 SITE 1 AC4 6 LYS A 77 THR A 99 GLU A 100 HOH A2234 SITE 2 AC4 6 HOH A2348 HOH A2349 SITE 1 AC5 4 ASN A 62 ILE A 79 VAL A 80 HOH A2183 CRYST1 74.129 74.129 82.501 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013490 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013490 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012121 0.00000