HEADER HYDROLASE 22-JUL-09 2WOB TITLE 3B' CARBOHYDRATE-BINDING MODULE FROM THE CEL9V GLYCOSIDE HYDROLASE TITLE 2 FROM CLOSTRIDIUM THERMOCELLUM. ORTHORHOMBIC STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSIDE HYDROLASE, FAMILY 9; COMPND 3 CHAIN: A, C, E; COMPND 4 FRAGMENT: CARBOHYDRATE-BINDING MODULE 3B', RESIDUES 731-888; COMPND 5 SYNONYM: CEL9V GLYCOSIDE HYDROLASE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM; SOURCE 3 ORGANISM_TAXID: 1515; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET-28A KEYWDS CELLULOSE DEGRADATION, HYDROLASE, GLYCOSIDE HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.PETKUN,S.JINDOU,L.J.W.SHIMON,E.A.BAYER,R.LAMED,F.FROLOW REVDAT 5 20-DEC-23 2WOB 1 REMARK REVDAT 4 05-JUL-17 2WOB 1 REMARK REVDAT 3 30-JAN-13 2WOB 1 JRNL REVDAT 2 13-JUL-11 2WOB 1 VERSN REVDAT 1 29-DEC-09 2WOB 0 JRNL AUTH S.PETKUN,S.JINDOU,L.J.W.SHIMON,E.A.BAYER,R.LAMED,F.FROLOW JRNL TITL STRUCTURE OF A FAMILY 3B' CARBOHYDRATE-BINDING MODULE FROM JRNL TITL 2 THE CEL9V GLYCOSIDE HYDROLASE FROM CLOSTRIDIUM THERMOCELLUM: JRNL TITL 3 STRUCTURAL DIVERSITY AND IMPLICATIONS FOR CARBOHYDRATE JRNL TITL 4 BINDING JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 66 33 2010 JRNL REFN ISSN 0907-4449 JRNL PMID 20057047 JRNL DOI 10.1107/S0907444909043030 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.JINDOU,Q.XU,R.KENIG,M.SHULMAN,Y.SHOHAM,E.A.BAYER,R.LAMED REMARK 1 TITL NOVEL ARCHITECTURE OF FAMILY-9 GLYCOSIDE HYDROLASES REMARK 1 TITL 2 IDENTIFIED IN CELLULOSOMAL ENZYMES OF ACETIVIBRIO REMARK 1 TITL 3 CELLULOLYTICUS AND CLOSTRIDIUM THERMOCELLUM. REMARK 1 REF FEMS MICROBIOL.LETT. V. 254 308 2006 REMARK 1 REFN ISSN 0378-1097 REMARK 1 PMID 16445761 REMARK 1 DOI 10.1111/J.1574-6968.2005.00040.X REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 121.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 37305 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1973 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2585 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3505 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 269 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 31.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.33000 REMARK 3 B22 (A**2) : 0.53000 REMARK 3 B33 (A**2) : -1.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.138 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.142 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.595 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3631 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4926 ; 1.893 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 474 ; 7.896 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;37.819 ;25.765 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 609 ;16.291 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;19.772 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 543 ; 0.150 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2792 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2298 ; 2.998 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3710 ; 4.601 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1333 ; 6.228 ; 7.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1210 ; 9.087 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 160 REMARK 3 ORIGIN FOR THE GROUP (A): 22.4949 32.0732 76.7967 REMARK 3 T TENSOR REMARK 3 T11: 0.0425 T22: 0.0283 REMARK 3 T33: 0.0656 T12: -0.0249 REMARK 3 T13: 0.0009 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 0.5068 L22: 1.1199 REMARK 3 L33: 1.5855 L12: 0.2456 REMARK 3 L13: -0.2068 L23: -0.6640 REMARK 3 S TENSOR REMARK 3 S11: 0.0963 S12: -0.0473 S13: 0.0436 REMARK 3 S21: 0.0600 S22: -0.0363 S23: 0.0831 REMARK 3 S31: -0.1095 S32: -0.0261 S33: -0.0600 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 9 C 161 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4403 48.4023 37.6104 REMARK 3 T TENSOR REMARK 3 T11: 0.0433 T22: 0.0189 REMARK 3 T33: 0.0707 T12: 0.0208 REMARK 3 T13: 0.0025 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.7460 L22: 1.2680 REMARK 3 L33: 1.5519 L12: -0.5797 REMARK 3 L13: 0.2867 L23: -0.4940 REMARK 3 S TENSOR REMARK 3 S11: -0.0125 S12: -0.0081 S13: -0.0946 REMARK 3 S21: 0.0515 S22: 0.0643 S23: 0.1054 REMARK 3 S31: 0.0421 S32: -0.0891 S33: -0.0518 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 8 E 163 REMARK 3 ORIGIN FOR THE GROUP (A): 11.4083 17.3443 115.2935 REMARK 3 T TENSOR REMARK 3 T11: 0.0086 T22: 0.1114 REMARK 3 T33: 0.0318 T12: -0.0133 REMARK 3 T13: 0.0089 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 1.5202 L22: 0.8313 REMARK 3 L33: 3.5516 L12: -0.0830 REMARK 3 L13: -0.5724 L23: 0.4878 REMARK 3 S TENSOR REMARK 3 S11: 0.0176 S12: -0.2448 S13: 0.0880 REMARK 3 S21: 0.0526 S22: 0.0611 S23: 0.0840 REMARK 3 S31: 0.0913 S32: 0.0552 S33: -0.0788 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES RESIDUAL ONLY. DISORDERED REGIONS WERE REMARK 3 MODELED STEREOCHEMICALLY ACCORDING TO HIGHER RESOLUTION REMARK 3 STRUCTURE 2WNX. REMARK 4 REMARK 4 2WOB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1290040514. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU ULTRAX 18 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC CONFOCAL MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41368 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2W04 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M TRI REMARK 280 -SODIUM CITRATE DIHYDRATE PH 5.6, 30% W/V PEG 4000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 121.18500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 121.18500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.51450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.30550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.51450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.30550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 121.18500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.51450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.30550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 121.18500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.51450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.30550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 PRO A 3 REMARK 465 SER A 4 REMARK 465 GLN A 5 REMARK 465 THR A 6 REMARK 465 PRO A 7 REMARK 465 ASP A 8 REMARK 465 ALA A 9 REMARK 465 ASN A 10 REMARK 465 ALA A 161 REMARK 465 ALA A 162 REMARK 465 LEU A 163 REMARK 465 GLU A 164 REMARK 465 HIS A 165 REMARK 465 HIS A 166 REMARK 465 HIS A 167 REMARK 465 HIS A 168 REMARK 465 HIS A 169 REMARK 465 HIS A 170 REMARK 465 MET C 1 REMARK 465 ASP C 2 REMARK 465 PRO C 3 REMARK 465 SER C 4 REMARK 465 GLN C 5 REMARK 465 THR C 6 REMARK 465 PRO C 7 REMARK 465 ASP C 8 REMARK 465 ALA C 162 REMARK 465 LEU C 163 REMARK 465 GLU C 164 REMARK 465 HIS C 165 REMARK 465 HIS C 166 REMARK 465 HIS C 167 REMARK 465 HIS C 168 REMARK 465 HIS C 169 REMARK 465 HIS C 170 REMARK 465 MET E 1 REMARK 465 ASP E 2 REMARK 465 PRO E 3 REMARK 465 SER E 4 REMARK 465 GLN E 5 REMARK 465 THR E 6 REMARK 465 PRO E 7 REMARK 465 GLU E 164 REMARK 465 HIS E 165 REMARK 465 HIS E 166 REMARK 465 HIS E 167 REMARK 465 HIS E 168 REMARK 465 HIS E 169 REMARK 465 HIS E 170 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR C 25 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP E 67 O HOH E 2025 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 19 CB CYS A 19 SG -0.130 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 30 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 21 -37.71 -32.79 REMARK 500 LYS A 22 -48.39 107.84 REMARK 500 ASP A 23 -163.69 63.97 REMARK 500 MET A 136 55.78 -103.87 REMARK 500 ASP C 23 -140.24 -107.47 REMARK 500 MET C 136 52.10 -104.93 REMARK 500 ALA C 160 -102.77 77.15 REMARK 500 ALA E 9 -20.60 65.02 REMARK 500 LYS E 22 -39.12 93.07 REMARK 500 ASP E 23 -119.28 62.25 REMARK 500 LYS E 26 -2.62 78.28 REMARK 500 ASN E 85 77.32 -103.69 REMARK 500 MET E 136 50.82 -105.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL C 21 LYS C 22 37.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2021 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH C2018 DISTANCE = 5.95 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1161 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 1161 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 1161 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WNX RELATED DB: PDB REMARK 900 3B' CARBOHYDRATE-BINDING MODULE FROM THE CEL9V GLYCOSIDE HYDROLASE REMARK 900 FROM CLOSTRIDIUM THERMOCELLUM REMARK 900 RELATED ID: 2WO4 RELATED DB: PDB REMARK 900 3B' CARBOHYDRATE-BINDING MODULE FROM THE CEL9V GLYCOSIDE HYDROLASE REMARK 900 FROM CLOSTRIDIUM THERMOCELLUM, IN-HOUSE DATA DBREF 2WOB A 1 1 PDB 2WOB 2WOB 1 1 DBREF 2WOB A 2 159 UNP A3DJ30 A3DJ30_CLOTH 731 888 DBREF 2WOB A 160 170 PDB 2WOB 2WOB 160 170 DBREF 2WOB C 1 1 PDB 2WOB 2WOB 1 1 DBREF 2WOB C 2 159 UNP A3DJ30 A3DJ30_CLOTH 731 888 DBREF 2WOB C 160 170 PDB 2WOB 2WOB 160 170 DBREF 2WOB E 1 1 PDB 2WOB 2WOB 1 1 DBREF 2WOB E 2 159 UNP A3DJ30 A3DJ30_CLOTH 731 888 DBREF 2WOB E 160 170 PDB 2WOB 2WOB 160 170 SEQRES 1 A 170 MET ASP PRO SER GLN THR PRO ASP ALA ASN ALA SER ILE SEQRES 2 A 170 SER VAL SER TYR LYS CYS GLY VAL LYS ASP GLY THR LYS SEQRES 3 A 170 ASN THR ILE ARG ALA THR ILE ASN ILE LYS ASN THR GLY SEQRES 4 A 170 THR THR PRO VAL ASN LEU SER ASP ILE LYS VAL ARG TYR SEQRES 5 A 170 TRP PHE THR SER ASP GLY ASN GLU GLN ASN ASN PHE VAL SEQRES 6 A 170 CYS ASP TYR ALA ALA PHE GLY THR ASP LYS VAL LYS GLY SEQRES 7 A 170 ILE VAL LYS LYS ILE GLU ASN SER VAL PRO GLY ALA ASP SEQRES 8 A 170 THR TYR CYS GLU ILE SER PHE THR GLU ASP ALA GLY ARG SEQRES 9 A 170 LEU ALA PRO GLY GLY SER THR GLY THR ILE PRO PHE ARG SEQRES 10 A 170 ILE GLU GLY ALA ALA GLU TYR ASP GLN THR ASP ASP TYR SEQRES 11 A 170 SER TYR ASN SER GLU MET SER ASP ASP PHE GLY ASP ASN SEQRES 12 A 170 THR LYS ILE THR ALA TYR ILE LYS ASP LYS LEU LYS TYR SEQRES 13 A 170 GLY VAL GLU ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS SEQRES 14 A 170 HIS SEQRES 1 C 170 MET ASP PRO SER GLN THR PRO ASP ALA ASN ALA SER ILE SEQRES 2 C 170 SER VAL SER TYR LYS CYS GLY VAL LYS ASP GLY THR LYS SEQRES 3 C 170 ASN THR ILE ARG ALA THR ILE ASN ILE LYS ASN THR GLY SEQRES 4 C 170 THR THR PRO VAL ASN LEU SER ASP ILE LYS VAL ARG TYR SEQRES 5 C 170 TRP PHE THR SER ASP GLY ASN GLU GLN ASN ASN PHE VAL SEQRES 6 C 170 CYS ASP TYR ALA ALA PHE GLY THR ASP LYS VAL LYS GLY SEQRES 7 C 170 ILE VAL LYS LYS ILE GLU ASN SER VAL PRO GLY ALA ASP SEQRES 8 C 170 THR TYR CYS GLU ILE SER PHE THR GLU ASP ALA GLY ARG SEQRES 9 C 170 LEU ALA PRO GLY GLY SER THR GLY THR ILE PRO PHE ARG SEQRES 10 C 170 ILE GLU GLY ALA ALA GLU TYR ASP GLN THR ASP ASP TYR SEQRES 11 C 170 SER TYR ASN SER GLU MET SER ASP ASP PHE GLY ASP ASN SEQRES 12 C 170 THR LYS ILE THR ALA TYR ILE LYS ASP LYS LEU LYS TYR SEQRES 13 C 170 GLY VAL GLU ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS SEQRES 14 C 170 HIS SEQRES 1 E 170 MET ASP PRO SER GLN THR PRO ASP ALA ASN ALA SER ILE SEQRES 2 E 170 SER VAL SER TYR LYS CYS GLY VAL LYS ASP GLY THR LYS SEQRES 3 E 170 ASN THR ILE ARG ALA THR ILE ASN ILE LYS ASN THR GLY SEQRES 4 E 170 THR THR PRO VAL ASN LEU SER ASP ILE LYS VAL ARG TYR SEQRES 5 E 170 TRP PHE THR SER ASP GLY ASN GLU GLN ASN ASN PHE VAL SEQRES 6 E 170 CYS ASP TYR ALA ALA PHE GLY THR ASP LYS VAL LYS GLY SEQRES 7 E 170 ILE VAL LYS LYS ILE GLU ASN SER VAL PRO GLY ALA ASP SEQRES 8 E 170 THR TYR CYS GLU ILE SER PHE THR GLU ASP ALA GLY ARG SEQRES 9 E 170 LEU ALA PRO GLY GLY SER THR GLY THR ILE PRO PHE ARG SEQRES 10 E 170 ILE GLU GLY ALA ALA GLU TYR ASP GLN THR ASP ASP TYR SEQRES 11 E 170 SER TYR ASN SER GLU MET SER ASP ASP PHE GLY ASP ASN SEQRES 12 E 170 THR LYS ILE THR ALA TYR ILE LYS ASP LYS LEU LYS TYR SEQRES 13 E 170 GLY VAL GLU ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS SEQRES 14 E 170 HIS HET CA A1161 1 HET CA C1161 1 HET CA E1161 1 HETNAM CA CALCIUM ION FORMUL 4 CA 3(CA 2+) FORMUL 7 HOH *269(H2 O) HELIX 1 1 ASN A 44 SER A 46 5 3 HELIX 2 2 ASP A 125 ASP A 129 5 5 HELIX 3 3 ASN A 133 SER A 137 5 5 HELIX 4 4 ASN C 44 SER C 46 5 3 HELIX 5 5 ASP C 125 ASP C 129 5 5 HELIX 6 6 ASN E 44 SER E 46 5 3 HELIX 7 7 ASP E 125 ASP E 129 5 5 HELIX 8 8 ASN E 133 SER E 137 5 5 SHEET 1 AA 4 ILE A 13 LYS A 18 0 SHEET 2 AA 4 ILE A 29 ASN A 37 -1 O THR A 32 N LYS A 18 SHEET 3 AA 4 ILE A 114 GLU A 119 -1 O ILE A 114 N ILE A 33 SHEET 4 AA 4 ASN A 63 CYS A 66 -1 O ASN A 63 N GLU A 119 SHEET 1 AB 5 VAL A 76 LYS A 82 0 SHEET 2 AB 5 THR A 92 PHE A 98 -1 O TYR A 93 N LYS A 81 SHEET 3 AB 5 ILE A 48 PHE A 54 -1 O VAL A 50 N ILE A 96 SHEET 4 AB 5 THR A 147 ILE A 150 -1 O THR A 147 N ARG A 51 SHEET 5 AB 5 LYS A 153 TYR A 156 -1 O LYS A 153 N ILE A 150 SHEET 1 CA 4 ILE C 13 LYS C 18 0 SHEET 2 CA 4 ILE C 29 ASN C 37 -1 O THR C 32 N LYS C 18 SHEET 3 CA 4 ILE C 114 GLU C 119 -1 O ILE C 114 N ILE C 33 SHEET 4 CA 4 ASN C 63 CYS C 66 -1 O ASN C 63 N GLU C 119 SHEET 1 CB 5 VAL C 76 LYS C 82 0 SHEET 2 CB 5 THR C 92 PHE C 98 -1 O TYR C 93 N LYS C 81 SHEET 3 CB 5 ILE C 48 PHE C 54 -1 O VAL C 50 N ILE C 96 SHEET 4 CB 5 THR C 147 ILE C 150 -1 O THR C 147 N ARG C 51 SHEET 5 CB 5 LYS C 153 TYR C 156 -1 O LYS C 153 N ILE C 150 SHEET 1 EA 4 ILE E 13 LYS E 18 0 SHEET 2 EA 4 ILE E 29 ASN E 37 -1 O THR E 32 N LYS E 18 SHEET 3 EA 4 ILE E 114 GLU E 119 -1 O ILE E 114 N ILE E 33 SHEET 4 EA 4 ASN E 63 CYS E 66 -1 O ASN E 63 N GLU E 119 SHEET 1 EB 5 VAL E 76 LYS E 82 0 SHEET 2 EB 5 THR E 92 PHE E 98 -1 O TYR E 93 N LYS E 81 SHEET 3 EB 5 ILE E 48 PHE E 54 -1 O ILE E 48 N PHE E 98 SHEET 4 EB 5 THR E 147 ILE E 150 -1 O THR E 147 N ARG E 51 SHEET 5 EB 5 LYS E 153 TYR E 156 -1 O LYS E 153 N ILE E 150 CISPEP 1 ASP A 23 GLY A 24 0 -2.16 CISPEP 2 GLU C 159 ALA C 160 0 18.90 CISPEP 3 ASP E 23 GLY E 24 0 4.67 SITE 1 AC1 6 THR A 55 ASP A 57 ASP A 125 ASP A 128 SITE 2 AC1 6 ASP A 129 HOH A2083 SITE 1 AC2 6 THR C 55 ASP C 57 ASP C 125 ASP C 128 SITE 2 AC2 6 ASP C 129 HOH C2069 SITE 1 AC3 6 THR E 55 ASP E 57 ASP E 125 ASP E 128 SITE 2 AC3 6 ASP E 129 HOH E2059 CRYST1 57.029 86.611 242.370 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017535 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011546 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004126 0.00000