HEADER PROTEIN BINDING 31-JUL-09 2WOZ TITLE THE NOVEL BETA-PROPELLER OF THE BTB-KELCH PROTEIN KRP1 PROVIDES THE TITLE 2 BINDING SITE FOR LASP-1 THAT IS NECESSARY FOR PSEUDOPODIA EXTENSION COMPND MOL_ID: 1; COMPND 2 MOLECULE: KELCH REPEAT AND BTB DOMAIN-CONTAINING PROTEIN 10; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KELCH DOMAIN, RESIDUES 289-606; COMPND 5 SYNONYM: KRP1, KELCH-RELATED PROTEIN 1, KEL-LIKE PROTEIN 23, COMPND 6 SARCOSIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX6P-1 KEYWDS PROTEIN BINDING, INVASION AND METASTASIS, UBL CONJUGATION PATHWAY, KEYWDS 2 UBL PROTEIN FOLDING, CELL PROJECTION, CYTOSKELETON, KELCH REPEAT, KEYWDS 3 KELCH DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR C.H.GRAY,L.C.MCGARRY,H.J.SPENCE,A.RIBOLDI-TUNNICLIFFE,B.W.OZANNE REVDAT 6 08-MAY-24 2WOZ 1 REMARK REVDAT 5 13-JUN-18 2WOZ 1 SOURCE JRNL REMARK REVDAT 4 13-JUL-11 2WOZ 1 REMARK FORMUL REVDAT 3 03-NOV-09 2WOZ 1 JRNL REVDAT 2 15-SEP-09 2WOZ 1 JRNL REVDAT 1 01-SEP-09 2WOZ 0 JRNL AUTH C.H.GRAY,L.C.MCGARRY,H.J.SPENCE,A.RIBOLDI-TUNNICLIFFE, JRNL AUTH 2 B.W.OZANNE JRNL TITL NOVEL BETA-PROPELLER OF THE BTB-KELCH PROTEIN KRP1 PROVIDES JRNL TITL 2 A BINDING SITE FOR LASP-1 THAT IS NECESSARY FOR PSEUDOPODIAL JRNL TITL 3 EXTENSION. JRNL REF J. BIOL. CHEM. V. 284 30498 2009 JRNL REFN ESSN 1083-351X JRNL PMID 19726686 JRNL DOI 10.1074/JBC.M109.023259 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 20693 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.11 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3049 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2389 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 167 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2WOZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1290040624. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20693 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 45.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 33.05500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.26500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.05500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.26500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 66.11000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 356 REMARK 465 GLU A 357 REMARK 465 GLU A 358 REMARK 465 ASN A 359 REMARK 465 LYS A 360 REMARK 465 ASP A 361 REMARK 465 GLN A 362 REMARK 465 LEU A 555 REMARK 465 GLU A 556 REMARK 465 SER A 557 REMARK 465 LYS A 558 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 601 CB CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 297 O HOH A 2007 2.17 REMARK 500 OE1 GLU A 395 O HOH A 2052 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 495 N - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 LEU A 517 N - CA - C ANGL. DEV. = 19.2 DEGREES REMARK 500 LEU A 594 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 310 -166.16 -128.82 REMARK 500 ALA A 330 35.66 -147.69 REMARK 500 GLN A 343 -86.26 32.70 REMARK 500 GLN A 344 -176.35 -58.60 REMARK 500 ASN A 345 48.51 -102.88 REMARK 500 LEU A 353 122.18 -175.48 REMARK 500 TYR A 354 -82.23 -107.76 REMARK 500 LEU A 364 97.87 62.27 REMARK 500 ASP A 398 -17.46 73.07 REMARK 500 ALA A 404 -150.70 59.23 REMARK 500 LYS A 406 62.59 86.87 REMARK 500 ASP A 458 -136.40 -59.73 REMARK 500 LYS A 494 88.10 24.42 REMARK 500 LEU A 517 29.81 -79.05 REMARK 500 LYS A 518 -90.62 144.96 REMARK 500 ALA A 541 -117.12 56.01 REMARK 500 ALA A 551 -161.45 83.35 REMARK 500 ASN A 566 57.70 -102.54 REMARK 500 LYS A 575 -36.80 93.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 342 GLN A 343 94.27 REMARK 500 TYR A 354 VAL A 355 54.62 REMARK 500 LYS A 494 GLY A 495 -44.05 REMARK 500 LEU A 517 LYS A 518 -54.74 REMARK 500 THR A 519 ASN A 520 -38.08 REMARK 500 ILE A 553 GLN A 554 -89.05 REMARK 500 REMARK 500 REMARK: NULL DBREF 2WOZ A 289 606 UNP Q9ER30 KBTBA_RAT 289 606 SEQRES 1 A 318 PRO GLY TYR LEU ASN ASP ILE PRO ARG HIS GLY MET PHE SEQRES 2 A 318 VAL LYS ASP LEU ILE LEU LEU VAL ASN ASP THR ALA ALA SEQRES 3 A 318 VAL ALA TYR ASP PRO MET GLU ASN GLU CYS TYR LEU THR SEQRES 4 A 318 ALA LEU ALA GLU GLN ILE PRO ARG ASN HIS SER SER ILE SEQRES 5 A 318 VAL THR GLN GLN ASN GLN VAL TYR VAL VAL GLY GLY LEU SEQRES 6 A 318 TYR VAL ASP GLU GLU ASN LYS ASP GLN PRO LEU GLN SER SEQRES 7 A 318 TYR PHE PHE GLN LEU ASP ASN VAL SER SER GLU TRP VAL SEQRES 8 A 318 GLY LEU PRO PRO LEU PRO SER ALA ARG CYS LEU PHE GLY SEQRES 9 A 318 LEU GLY GLU VAL ASP ASP LYS ILE TYR VAL VAL ALA GLY SEQRES 10 A 318 LYS ASP LEU GLN THR GLU ALA SER LEU ASP SER VAL LEU SEQRES 11 A 318 CYS TYR ASP PRO VAL ALA ALA LYS TRP SER GLU VAL LYS SEQRES 12 A 318 ASN LEU PRO ILE LYS VAL TYR GLY HIS ASN VAL ILE SER SEQRES 13 A 318 HIS ASN GLY MET ILE TYR CYS LEU GLY GLY LYS THR ASP SEQRES 14 A 318 ASP LYS LYS CYS THR ASN ARG VAL PHE ILE TYR ASN PRO SEQRES 15 A 318 LYS LYS GLY ASP TRP LYS ASP LEU ALA PRO MET LYS THR SEQRES 16 A 318 PRO ARG SER MET PHE GLY VAL ALA ILE HIS LYS GLY LYS SEQRES 17 A 318 ILE VAL ILE ALA GLY GLY VAL THR GLU ASP GLY LEU SER SEQRES 18 A 318 ALA SER VAL GLU ALA PHE ASP LEU LYS THR ASN LYS TRP SEQRES 19 A 318 GLU VAL MET THR GLU PHE PRO GLN GLU ARG SER SER ILE SEQRES 20 A 318 SER LEU VAL SER LEU ALA GLY SER LEU TYR ALA ILE GLY SEQRES 21 A 318 GLY PHE ALA MET ILE GLN LEU GLU SER LYS GLU PHE ALA SEQRES 22 A 318 PRO THR GLU VAL ASN ASP ILE TRP LYS TYR GLU ASP ASP SEQRES 23 A 318 LYS LYS GLU TRP ALA GLY MET LEU LYS GLU ILE ARG TYR SEQRES 24 A 318 ALA SER GLY ALA SER CYS LEU ALA THR ARG LEU ASN LEU SEQRES 25 A 318 PHE LYS LEU SER LYS LEU FORMUL 2 HOH *167(H2 O) HELIX 1 1 ILE A 585 SER A 589 5 5 HELIX 2 2 PHE A 601 LEU A 603 5 3 SHEET 1 AA 4 GLU A 323 LEU A 329 0 SHEET 2 AA 4 ALA A 313 ASP A 318 -1 O ALA A 314 N THR A 327 SHEET 3 AA 4 VAL A 302 VAL A 309 -1 O ILE A 306 N TYR A 317 SHEET 4 AA 4 SER A 592 ASN A 599 -1 O SER A 592 N VAL A 309 SHEET 1 AB 4 SER A 338 VAL A 341 0 SHEET 2 AB 4 VAL A 347 VAL A 350 -1 O TYR A 348 N ILE A 340 SHEET 3 AB 4 PHE A 369 ASP A 372 -1 O PHE A 369 N VAL A 349 SHEET 4 AB 4 GLU A 377 VAL A 379 -1 O GLU A 377 N ASP A 372 SHEET 1 AC 3 ILE A 400 VAL A 403 0 SHEET 2 AC 3 VAL A 417 ASP A 421 -1 O LEU A 418 N VAL A 402 SHEET 3 AC 3 LYS A 426 VAL A 430 -1 O LYS A 426 N ASP A 421 SHEET 1 AD 4 VAL A 437 SER A 444 0 SHEET 2 AD 4 ILE A 449 THR A 456 -1 O TYR A 450 N ILE A 443 SHEET 3 AD 4 VAL A 465 TYR A 468 -1 O PHE A 466 N CYS A 451 SHEET 4 AD 4 TRP A 475 LEU A 478 -1 O LYS A 476 N ILE A 467 SHEET 1 AE 4 ALA A 491 ILE A 492 0 SHEET 2 AE 4 ILE A 497 ILE A 499 -1 O VAL A 498 N ALA A 491 SHEET 3 AE 4 GLU A 513 PHE A 515 -1 O GLU A 513 N ILE A 499 SHEET 4 AE 4 TRP A 522 VAL A 524 -1 O GLU A 523 N ALA A 514 SHEET 1 AF 4 SER A 536 SER A 539 0 SHEET 2 AF 4 LEU A 544 ILE A 547 -1 O TYR A 545 N VAL A 538 SHEET 3 AF 4 ILE A 568 GLU A 572 -1 O TRP A 569 N ALA A 546 SHEET 4 AF 4 GLU A 577 LEU A 582 -1 O GLU A 577 N GLU A 572 CISPEP 1 LEU A 353 TYR A 354 0 9.22 CISPEP 2 GLY A 405 LYS A 406 0 -10.56 CISPEP 3 ALA A 551 MET A 552 0 -21.49 CRYST1 66.110 98.530 46.970 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015126 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010149 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021290 0.00000 TER 2390 LEU A 606 HETATM 2391 O HOH A2001 13.165 0.512 45.118 1.00 43.68 O HETATM 2392 O HOH A2002 13.036 -5.269 47.052 1.00 52.15 O HETATM 2393 O HOH A2003 19.750 3.311 44.989 1.00 42.70 O HETATM 2394 O HOH A2004 11.641 2.496 35.691 1.00 31.05 O HETATM 2395 O HOH A2005 16.818 5.386 39.935 1.00 35.94 O HETATM 2396 O HOH A2006 25.718 7.562 24.864 1.00 20.92 O HETATM 2397 O HOH A2007 23.259 6.477 24.957 1.00 28.98 O HETATM 2398 O HOH A2008 27.036 5.143 24.405 1.00 21.68 O HETATM 2399 O HOH A2009 29.713 6.842 19.276 1.00 29.54 O HETATM 2400 O HOH A2010 28.413 5.994 27.777 1.00 35.98 O HETATM 2401 O HOH A2011 34.478 5.584 32.071 1.00 36.34 O HETATM 2402 O HOH A2012 28.756 10.409 27.194 1.00 38.37 O HETATM 2403 O HOH A2013 51.737 8.603 23.850 1.00 28.12 O HETATM 2404 O HOH A2014 57.547 13.966 18.802 1.00 35.00 O HETATM 2405 O HOH A2015 44.178 0.570 34.352 1.00 38.69 O HETATM 2406 O HOH A2016 36.947 3.257 32.890 1.00 28.30 O HETATM 2407 O HOH A2017 41.042 -2.028 36.402 1.00 31.05 O HETATM 2408 O HOH A2018 36.138 -2.598 26.912 1.00 48.23 O HETATM 2409 O HOH A2019 40.188 9.417 16.964 1.00 29.10 O HETATM 2410 O HOH A2020 56.337 17.725 19.436 1.00 28.23 O HETATM 2411 O HOH A2021 53.935 10.133 14.207 1.00 32.16 O HETATM 2412 O HOH A2022 50.938 14.106 14.306 1.00 30.49 O HETATM 2413 O HOH A2023 54.841 21.999 16.347 1.00 26.30 O HETATM 2414 O HOH A2024 58.208 22.371 24.586 1.00 41.20 O HETATM 2415 O HOH A2025 51.848 18.473 29.565 1.00 33.52 O HETATM 2416 O HOH A2026 53.861 20.423 30.504 1.00 33.45 O HETATM 2417 O HOH A2027 51.040 25.727 31.529 1.00 23.77 O HETATM 2418 O HOH A2028 41.689 20.767 31.417 1.00 38.92 O HETATM 2419 O HOH A2029 46.779 20.658 30.994 1.00 29.11 O HETATM 2420 O HOH A2030 39.407 20.267 30.332 1.00 20.80 O HETATM 2421 O HOH A2031 38.386 26.058 24.980 1.00 39.12 O HETATM 2422 O HOH A2032 36.752 14.595 22.262 1.00 27.24 O HETATM 2423 O HOH A2033 37.110 18.560 16.129 1.00 24.79 O HETATM 2424 O HOH A2034 58.592 36.744 12.313 1.00 39.37 O HETATM 2425 O HOH A2035 55.175 34.512 12.369 1.00 38.10 O HETATM 2426 O HOH A2036 54.516 30.717 11.947 1.00 61.29 O HETATM 2427 O HOH A2037 52.365 38.488 18.115 1.00 49.03 O HETATM 2428 O HOH A2038 49.547 27.764 16.491 1.00 24.47 O HETATM 2429 O HOH A2039 49.897 25.272 16.149 1.00 28.52 O HETATM 2430 O HOH A2040 38.707 17.841 19.400 1.00 20.96 O HETATM 2431 O HOH A2041 42.417 11.334 8.927 1.00 40.62 O HETATM 2432 O HOH A2042 44.880 12.288 8.473 1.00 35.70 O HETATM 2433 O HOH A2043 45.846 19.214 10.237 1.00 39.68 O HETATM 2434 O HOH A2044 47.810 15.777 13.109 1.00 25.84 O HETATM 2435 O HOH A2045 46.672 23.133 10.363 1.00 23.91 O HETATM 2436 O HOH A2046 47.934 34.815 16.945 1.00 35.38 O HETATM 2437 O HOH A2047 54.537 38.570 23.274 1.00 35.79 O HETATM 2438 O HOH A2048 53.764 37.624 27.387 1.00 34.74 O HETATM 2439 O HOH A2049 54.660 24.793 31.067 1.00 33.59 O HETATM 2440 O HOH A2050 33.266 28.151 32.454 1.00 51.08 O HETATM 2441 O HOH A2051 32.040 24.439 25.593 1.00 37.42 O HETATM 2442 O HOH A2052 32.842 24.240 28.046 1.00 44.23 O HETATM 2443 O HOH A2053 28.034 31.838 29.825 1.00 69.89 O HETATM 2444 O HOH A2054 31.133 32.588 23.644 1.00 49.67 O HETATM 2445 O HOH A2055 33.587 23.855 21.868 1.00 30.42 O HETATM 2446 O HOH A2056 35.702 26.025 21.371 1.00 30.53 O HETATM 2447 O HOH A2057 60.282 31.480 30.968 1.00 40.11 O HETATM 2448 O HOH A2058 57.187 40.341 30.216 1.00 42.89 O HETATM 2449 O HOH A2059 57.986 11.179 18.711 1.00 65.35 O HETATM 2450 O HOH A2060 55.069 35.513 40.000 1.00 36.30 O HETATM 2451 O HOH A2061 54.477 41.607 33.735 1.00 31.89 O HETATM 2452 O HOH A2062 52.025 40.794 33.047 1.00 35.38 O HETATM 2453 O HOH A2063 55.661 19.620 13.591 1.00 44.94 O HETATM 2454 O HOH A2064 38.229 36.807 22.308 1.00 34.64 O HETATM 2455 O HOH A2065 32.143 32.777 20.535 1.00 42.34 O HETATM 2456 O HOH A2066 36.819 39.830 15.582 1.00 64.27 O HETATM 2457 O HOH A2067 42.816 40.891 13.565 1.00 43.04 O HETATM 2458 O HOH A2068 45.065 36.096 17.396 1.00 35.38 O HETATM 2459 O HOH A2069 44.698 40.758 30.578 1.00 30.72 O HETATM 2460 O HOH A2070 47.480 42.310 38.311 1.00 31.18 O HETATM 2461 O HOH A2071 49.702 24.072 39.139 1.00 23.15 O HETATM 2462 O HOH A2072 50.880 26.518 35.915 1.00 21.10 O HETATM 2463 O HOH A2073 47.608 25.152 35.013 1.00 31.18 O HETATM 2464 O HOH A2074 49.435 23.292 36.428 1.00 48.84 O HETATM 2465 O HOH A2075 44.576 24.797 33.850 1.00 29.20 O HETATM 2466 O HOH A2076 39.236 24.262 32.623 1.00 36.63 O HETATM 2467 O HOH A2077 29.303 32.780 32.796 1.00 36.92 O HETATM 2468 O HOH A2078 31.043 27.520 39.337 1.00 34.34 O HETATM 2469 O HOH A2079 31.571 30.177 42.868 1.00 27.49 O HETATM 2470 O HOH A2080 45.823 32.021 42.258 1.00 16.16 O HETATM 2471 O HOH A2081 57.986 39.245 37.087 1.00 33.53 O HETATM 2472 O HOH A2082 64.561 32.049 44.978 1.00 66.65 O HETATM 2473 O HOH A2083 49.805 35.795 47.985 1.00 33.05 O HETATM 2474 O HOH A2084 45.526 34.884 51.136 1.00 28.13 O HETATM 2475 O HOH A2085 49.946 32.704 50.616 1.00 26.85 O HETATM 2476 O HOH A2086 49.212 38.188 46.589 1.00 29.51 O HETATM 2477 O HOH A2087 31.959 36.464 40.425 1.00 31.47 O HETATM 2478 O HOH A2088 29.230 36.722 39.272 1.00 51.12 O HETATM 2479 O HOH A2089 30.033 37.665 44.488 1.00 42.95 O HETATM 2480 O HOH A2090 38.100 40.793 45.163 1.00 35.46 O HETATM 2481 O HOH A2091 41.902 34.266 48.038 1.00 23.79 O HETATM 2482 O HOH A2092 39.692 29.602 53.517 1.00 26.10 O HETATM 2483 O HOH A2093 41.140 22.744 53.296 1.00 30.77 O HETATM 2484 O HOH A2094 38.491 21.706 57.352 1.00 42.05 O HETATM 2485 O HOH A2095 40.034 26.620 55.535 1.00 58.13 O HETATM 2486 O HOH A2096 49.843 20.779 54.265 1.00 30.92 O HETATM 2487 O HOH A2097 53.349 26.634 51.389 1.00 25.41 O HETATM 2488 O HOH A2098 37.579 18.472 36.217 1.00 26.49 O HETATM 2489 O HOH A2099 29.194 16.905 47.223 1.00 43.12 O HETATM 2490 O HOH A2100 31.633 14.414 40.341 1.00 32.55 O HETATM 2491 O HOH A2101 30.486 18.221 40.444 1.00 38.58 O HETATM 2492 O HOH A2102 50.565 17.903 42.555 1.00 16.06 O HETATM 2493 O HOH A2103 64.812 15.819 35.747 1.00 42.64 O HETATM 2494 O HOH A2104 53.645 21.957 53.024 1.00 27.92 O HETATM 2495 O HOH A2105 55.909 30.569 49.980 1.00 51.04 O HETATM 2496 O HOH A2106 55.860 25.115 55.183 1.00 39.77 O HETATM 2497 O HOH A2107 56.621 23.202 57.582 1.00 42.92 O HETATM 2498 O HOH A2108 58.112 17.449 51.229 1.00 35.32 O HETATM 2499 O HOH A2109 51.802 19.999 52.895 1.00 36.86 O HETATM 2500 O HOH A2110 52.127 16.324 52.615 1.00 30.73 O HETATM 2501 O HOH A2111 45.376 18.631 53.395 1.00 34.88 O HETATM 2502 O HOH A2112 45.215 16.156 52.623 1.00 27.94 O HETATM 2503 O HOH A2113 27.575 29.405 50.162 1.00 38.48 O HETATM 2504 O HOH A2114 26.833 24.064 50.993 1.00109.94 O HETATM 2505 O HOH A2115 24.536 20.225 44.653 1.00 51.14 O HETATM 2506 O HOH A2116 28.589 28.364 54.452 1.00 46.44 O HETATM 2507 O HOH A2117 33.622 31.182 51.916 1.00 41.10 O HETATM 2508 O HOH A2118 28.743 30.190 46.370 1.00 45.92 O HETATM 2509 O HOH A2119 37.291 28.026 53.702 1.00 29.28 O HETATM 2510 O HOH A2120 51.052 10.302 52.265 1.00 35.76 O HETATM 2511 O HOH A2121 58.012 12.751 47.338 1.00 27.86 O HETATM 2512 O HOH A2122 58.914 14.301 49.327 1.00 23.97 O HETATM 2513 O HOH A2123 52.388 21.468 37.292 1.00 36.16 O HETATM 2514 O HOH A2124 56.326 19.336 38.842 1.00 30.78 O HETATM 2515 O HOH A2125 52.333 15.975 35.112 1.00 41.42 O HETATM 2516 O HOH A2126 48.938 18.667 37.009 1.00 26.85 O HETATM 2517 O HOH A2127 44.831 18.390 37.118 1.00 19.82 O HETATM 2518 O HOH A2128 32.931 13.255 35.646 1.00 54.43 O HETATM 2519 O HOH A2129 33.789 6.294 42.311 1.00 40.74 O HETATM 2520 O HOH A2130 35.533 5.793 35.954 1.00 34.22 O HETATM 2521 O HOH A2131 50.354 13.840 35.481 1.00 24.03 O HETATM 2522 O HOH A2132 53.213 13.284 35.592 1.00 46.81 O HETATM 2523 O HOH A2133 66.128 10.099 39.686 1.00 48.14 O HETATM 2524 O HOH A2134 63.573 6.035 46.195 1.00 40.85 O HETATM 2525 O HOH A2135 67.934 16.692 44.904 1.00 27.06 O HETATM 2526 O HOH A2136 63.164 14.031 36.172 1.00 53.38 O HETATM 2527 O HOH A2137 60.219 8.289 35.455 1.00 33.18 O HETATM 2528 O HOH A2138 61.388 12.090 35.476 1.00 28.94 O HETATM 2529 O HOH A2139 58.757 6.364 38.125 1.00 26.94 O HETATM 2530 O HOH A2140 56.521 5.163 36.477 1.00 28.72 O HETATM 2531 O HOH A2141 53.066 10.870 34.562 1.00 27.29 O HETATM 2532 O HOH A2142 38.474 12.344 51.824 1.00 37.68 O HETATM 2533 O HOH A2143 36.101 8.996 43.119 1.00 24.89 O HETATM 2534 O HOH A2144 34.622 10.433 50.636 1.00 32.60 O HETATM 2535 O HOH A2145 33.213 4.485 46.312 1.00 44.34 O HETATM 2536 O HOH A2146 32.592 8.748 54.074 1.00 45.67 O HETATM 2537 O HOH A2147 44.514 6.469 51.017 1.00 29.41 O HETATM 2538 O HOH A2148 44.050 -1.608 44.503 1.00 50.52 O HETATM 2539 O HOH A2149 55.490 3.029 38.156 1.00 26.25 O HETATM 2540 O HOH A2150 53.351 -0.368 31.565 1.00 36.34 O HETATM 2541 O HOH A2151 53.246 -0.199 26.591 1.00 41.19 O HETATM 2542 O HOH A2152 53.136 1.060 29.662 1.00 28.24 O HETATM 2543 O HOH A2153 49.962 9.335 25.323 1.00 26.36 O HETATM 2544 O HOH A2154 52.259 1.452 21.766 1.00 34.42 O HETATM 2545 O HOH A2155 58.534 12.709 29.202 1.00 40.55 O HETATM 2546 O HOH A2156 44.887 18.666 30.866 1.00 20.12 O HETATM 2547 O HOH A2157 47.074 17.217 32.908 1.00 20.05 O HETATM 2548 O HOH A2158 39.520 16.734 32.419 1.00 27.09 O HETATM 2549 O HOH A2159 28.923 16.331 23.644 1.00 32.78 O HETATM 2550 O HOH A2160 34.623 13.177 21.110 1.00 20.31 O HETATM 2551 O HOH A2161 35.313 10.699 19.294 1.00 17.22 O HETATM 2552 O HOH A2162 32.789 1.272 16.922 1.00 44.90 O HETATM 2553 O HOH A2163 35.236 11.152 10.264 1.00128.27 O HETATM 2554 O HOH A2164 38.695 4.153 13.710 1.00 32.59 O HETATM 2555 O HOH A2165 41.968 -0.116 14.580 1.00 30.40 O HETATM 2556 O HOH A2166 46.771 -2.993 19.001 1.00 39.21 O HETATM 2557 O HOH A2167 44.375 -0.692 21.099 1.00 24.55 O MASTER 351 0 0 2 23 0 0 6 2556 1 0 25 END