data_2WP2 # _entry.id 2WP2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.308 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2WP2 PDBE EBI-40590 WWPDB D_1290040590 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1U35 unspecified 'CRYSTAL STRUCTURE OF THE NUCLEOSOME CORE PARTICLECONTAINING THE HISTONE DOMAIN OF MACROH2A' PDB 1F66 unspecified '2.6 A CRYSTAL STRUCTURE OF A NUCLEOSOME CORE PARTICLECONTAINING THE VARIANT HISTONE H2A.Z' PDB 2WP1 unspecified 'STRUCTURE OF BRDT BROMODOMAIN 2 BOUND TO AN ACETYLATED HISTONE H3 PEPTIDE' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2WP2 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2009-08-02 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Moriniere, J.' 1 'Rousseaux, S.' 2 'Steuerwald, U.' 3 'Soler-Lopez, M.' 4 'Curtet, S.' 5 'Vitte, A.-L.' 6 'Govin, J.' 7 'Gaucher, J.' 8 'Sadoul, K.' 9 'Hart, D.J.' 10 'Krijgsveld, J.' 11 'Khochbin, S.' 12 'Mueller, C.W.' 13 'Petosa, C.' 14 # _citation.id primary _citation.title 'Cooperative Binding of Two Acetylation Marks on a Histone Tail by a Single Bromodomain.' _citation.journal_abbrev Nature _citation.journal_volume 461 _citation.page_first 664 _citation.page_last ? _citation.year 2009 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19794495 _citation.pdbx_database_id_DOI 10.1038/NATURE08397 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Moriniere, J.' 1 ? primary 'Rousseaux, S.' 2 ? primary 'Steuerwald, U.' 3 ? primary 'Soler-Lopez, M.' 4 ? primary 'Curtet, S.' 5 ? primary 'Vitte, A.-L.' 6 ? primary 'Govin, J.' 7 ? primary 'Gaucher, J.' 8 ? primary 'Sadoul, K.' 9 ? primary 'Hart, D.J.' 10 ? primary 'Krijgsveld, J.' 11 ? primary 'Khochbin, S.' 12 ? primary 'Mueller, C.W.' 13 ? primary 'Petosa, C.' 14 ? # _cell.entry_id 2WP2 _cell.length_a 49.293 _cell.length_b 61.224 _cell.length_c 97.910 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WP2 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'BROMODOMAIN TESTIS-SPECIFIC PROTEIN' 14271.539 2 ? ? 'BROMODOMAIN 1, RESIDUES 17-136' ? 2 polymer syn 'HISTONE H4' 2083.428 2 ? ? 'RESIDUES 2-21' ? 3 water nat water 18.015 111 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'BRDT, RING3-LIKE PROTEIN, BROMODOMAIN-CONTAINING FEMALE STERILE HOMEOTIC-LIKE PROTEIN' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;EYINTKKSGRLTNQLQFLQRVVLKALWKHGFSWPFQQPVDAVKLKLPDYYTIIKTPMDLNTIKKRLENKYYEKASECIED FNTMFSNCYLYNKTGDDIVVMAQALEKLFMQKLSQMPQEE ; ;EYINTKKSGRLTNQLQFLQRVVLKALWKHGFSWPFQQPVDAVKLKLPDYYTIIKTPMDLNTIKKRLENKYYEKASECIED FNTMFSNCYLYNKTGDDIVVMAQALEKLFMQKLSQMPQEE ; A,B ? 2 'polypeptide(L)' no yes 'SGRG(ALY)GG(ALY)GLGKGGAKRHRK' SGRGKGGKGLGKGGAKRHRK P,Q ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 TYR n 1 3 ILE n 1 4 ASN n 1 5 THR n 1 6 LYS n 1 7 LYS n 1 8 SER n 1 9 GLY n 1 10 ARG n 1 11 LEU n 1 12 THR n 1 13 ASN n 1 14 GLN n 1 15 LEU n 1 16 GLN n 1 17 PHE n 1 18 LEU n 1 19 GLN n 1 20 ARG n 1 21 VAL n 1 22 VAL n 1 23 LEU n 1 24 LYS n 1 25 ALA n 1 26 LEU n 1 27 TRP n 1 28 LYS n 1 29 HIS n 1 30 GLY n 1 31 PHE n 1 32 SER n 1 33 TRP n 1 34 PRO n 1 35 PHE n 1 36 GLN n 1 37 GLN n 1 38 PRO n 1 39 VAL n 1 40 ASP n 1 41 ALA n 1 42 VAL n 1 43 LYS n 1 44 LEU n 1 45 LYS n 1 46 LEU n 1 47 PRO n 1 48 ASP n 1 49 TYR n 1 50 TYR n 1 51 THR n 1 52 ILE n 1 53 ILE n 1 54 LYS n 1 55 THR n 1 56 PRO n 1 57 MET n 1 58 ASP n 1 59 LEU n 1 60 ASN n 1 61 THR n 1 62 ILE n 1 63 LYS n 1 64 LYS n 1 65 ARG n 1 66 LEU n 1 67 GLU n 1 68 ASN n 1 69 LYS n 1 70 TYR n 1 71 TYR n 1 72 GLU n 1 73 LYS n 1 74 ALA n 1 75 SER n 1 76 GLU n 1 77 CYS n 1 78 ILE n 1 79 GLU n 1 80 ASP n 1 81 PHE n 1 82 ASN n 1 83 THR n 1 84 MET n 1 85 PHE n 1 86 SER n 1 87 ASN n 1 88 CYS n 1 89 TYR n 1 90 LEU n 1 91 TYR n 1 92 ASN n 1 93 LYS n 1 94 THR n 1 95 GLY n 1 96 ASP n 1 97 ASP n 1 98 ILE n 1 99 VAL n 1 100 VAL n 1 101 MET n 1 102 ALA n 1 103 GLN n 1 104 ALA n 1 105 LEU n 1 106 GLU n 1 107 LYS n 1 108 LEU n 1 109 PHE n 1 110 MET n 1 111 GLN n 1 112 LYS n 1 113 LEU n 1 114 SER n 1 115 GLN n 1 116 MET n 1 117 PRO n 1 118 GLN n 1 119 GLU n 1 120 GLU n 2 1 SER n 2 2 GLY n 2 3 ARG n 2 4 GLY n 2 5 ALY n 2 6 GLY n 2 7 GLY n 2 8 ALY n 2 9 GLY n 2 10 LEU n 2 11 GLY n 2 12 LYS n 2 13 GLY n 2 14 GLY n 2 15 ALA n 2 16 LYS n 2 17 ARG n 2 18 HIS n 2 19 ARG n 2 20 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name MOUSE _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'MUS MUSCULUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'MUS MUSCULUS' _pdbx_entity_src_syn.organism_common_name MOUSE _pdbx_entity_src_syn.ncbi_taxonomy_id 10090 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP BRDT_MOUSE 1 ? ? Q91Y44 ? 2 UNP H4_MOUSE 2 ? ? P62806 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2WP2 A 1 ? 120 ? Q91Y44 17 ? 136 ? 17 136 2 1 2WP2 B 1 ? 120 ? Q91Y44 17 ? 136 ? 17 136 3 2 2WP2 P 1 ? 20 ? P62806 2 ? 21 ? 1 20 4 2 2WP2 Q 1 ? 20 ? P62806 2 ? 21 ? 1 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ALY 'L-peptide linking' n 'N(6)-ACETYLLYSINE' ? 'C8 H16 N2 O3' 188.224 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2WP2 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.69 _exptl_crystal.density_percent_sol 54.2 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;15 MG/ML BRDT-BD1 PROTEIN WAS MIXED WITH H4-ACK5/K8 PEPTIDE IN A 1:20 MOLAR RATIO. CRYSTALLIZATION WAS BY THE HANGING DROP VAPOUR DIFFUSION METHOD FROM 2.4 M AMMONIUM SULFATE, 0.1 M HEPES PH 7. ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2007-11-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.87260 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID23-2' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID23-2 _diffrn_source.pdbx_wavelength 0.87260 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2WP2 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 44.00 _reflns.d_resolution_high 2.37 _reflns.number_obs 12142 _reflns.number_all ? _reflns.percent_possible_obs 96.7 _reflns.pdbx_Rmerge_I_obs 0.14 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 7.10 _reflns.B_iso_Wilson_estimate 26.1 _reflns.pdbx_redundancy 3.3 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.37 _reflns_shell.d_res_low 2.40 _reflns_shell.percent_possible_all 63.3 _reflns_shell.Rmerge_I_obs 0.41 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.30 _reflns_shell.pdbx_redundancy 1.6 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2WP2 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 12142 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 100000000 _refine.pdbx_data_cutoff_low_absF 0 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 44 _refine.ls_d_res_high 2.37 _refine.ls_percent_reflns_obs 96.6 _refine.ls_R_factor_obs 0.217 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.217 _refine.ls_R_factor_R_free 0.261 _refine.ls_R_factor_R_free_error 0.011 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 587 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 27.4 _refine.aniso_B[1][1] -0.861 _refine.aniso_B[2][2] -0.794 _refine.aniso_B[3][3] 1.655 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.4 _refine.solvent_model_param_bsol 43.9719 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;THE FOLLOWING RESIDUES WERE NOT MODELLED BECAUSE OF POOR DENSITY - CHAIN A RESIDUES 21-26, CHAIN B RESIDUES 18-26, CHAIN P RESIDUES 1-3 AND 13-20, CHAIN Q RESIDUES 1 AND 13-20. THE FOLLOWING RESIDUES WERE MODELLED AS ALANINE - CHAIN A RESIDUES 18-21, CHAIN P RESIDUE 12, AND CHAIN Q RESIDUE 12. FOLLOWING RESIDUES WERE MODELLED AS ALA: A18-21, P12, Q12. ; _refine.pdbx_starting_model 'BROMODOMAIN BD2 FROM BRDT' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 2WP2 _refine_analyze.Luzzati_coordinate_error_obs 0.30 _refine_analyze.Luzzati_sigma_a_obs 0.27 _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free 0.36 _refine_analyze.Luzzati_sigma_a_free 0.27 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1988 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 111 _refine_hist.number_atoms_total 2099 _refine_hist.d_res_high 2.37 _refine_hist.d_res_low 44 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.00624 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.154 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 18.7 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.84 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.37 _refine_ls_shell.d_res_low 2.52 _refine_ls_shell.number_reflns_R_work 1682 _refine_ls_shell.R_factor_R_work 0.278 _refine_ls_shell.percent_reflns_obs 86.9 _refine_ls_shell.R_factor_R_free 0.345 _refine_ls_shell.R_factor_R_free_error 0.037 _refine_ls_shell.percent_reflns_R_free 4.9 _refine_ls_shell.number_reflns_R_free 86 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _pdbx_xplor_file.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_xplor_file.serial_no 1 _pdbx_xplor_file.param_file PROTEIN_REP_ALY.PARAM _pdbx_xplor_file.topol_file ? # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 1 given ? 0.699950 0.711810 -0.058240 0.711220 -0.702150 -0.034010 -0.065100 -0.017620 -0.997720 -1.42736 1.42373 -23.26795 2 given ? 0.699950 0.711810 -0.058240 0.711220 -0.702150 -0.034010 -0.065100 -0.017620 -0.997720 -1.42736 1.42373 -23.26795 # _struct.entry_id 2WP2 _struct.title 'Structure of Brdt bromodomain BD1 bound to a diacetylated histone H4 peptide.' _struct.pdbx_descriptor 'BROMODOMAIN TESTIS-SPECIFIC PROTEIN, HISTONE H4' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2WP2 _struct_keywords.pdbx_keywords TRANSCRIPTION/PEPTIDE _struct_keywords.text 'TRANSCRIPTION-PEPTIDE COMPLEX, TRANSCRIPTION REGULATION, BRDT, ACETYLLYSINE, NUCLEUS, COILED COIL, CHROMOSOMAL PROTEIN, NUCLEOSOME' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 12 ? LYS A 28 ? THR A 28 LYS A 44 1 ? 17 HELX_P HELX_P2 3 SER A 32 ? GLN A 36 ? SER A 48 GLN A 52 5 ? 5 HELX_P HELX_P3 4 ASP A 48 ? ILE A 53 ? ASP A 64 ILE A 69 1 ? 6 HELX_P HELX_P4 5 ASP A 58 ? ASN A 68 ? ASP A 74 ASN A 84 1 ? 11 HELX_P HELX_P5 6 LYS A 73 ? ASN A 92 ? LYS A 89 ASN A 108 1 ? 20 HELX_P HELX_P6 7 ASP A 96 ? SER A 114 ? ASP A 112 SER A 130 1 ? 19 HELX_P HELX_P7 8 THR B 12 ? VAL B 21 ? THR B 28 VAL B 37 1 ? 10 HELX_P HELX_P8 9 VAL B 21 ? HIS B 29 ? VAL B 37 HIS B 45 1 ? 9 HELX_P HELX_P9 10 SER B 32 ? GLN B 36 ? SER B 48 GLN B 52 5 ? 5 HELX_P HELX_P10 11 ASP B 48 ? ILE B 53 ? ASP B 64 ILE B 69 1 ? 6 HELX_P HELX_P11 12 ASP B 58 ? ASN B 68 ? ASP B 74 ASN B 84 1 ? 11 HELX_P HELX_P12 13 LYS B 73 ? ASN B 92 ? LYS B 89 ASN B 108 1 ? 20 HELX_P HELX_P13 14 ASP B 96 ? SER B 114 ? ASP B 112 SER B 130 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? C GLY 4 C ? ? ? 1_555 C ALY 5 N ? ? P GLY 4 P ALY 5 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale both ? C ALY 5 C ? ? ? 1_555 C GLY 6 N ? ? P ALY 5 P GLY 6 1_555 ? ? ? ? ? ? ? 1.325 ? covale3 covale both ? C GLY 7 C ? ? ? 1_555 C ALY 8 N ? ? P GLY 7 P ALY 8 1_555 ? ? ? ? ? ? ? 1.333 ? covale4 covale both ? C ALY 8 C ? ? ? 1_555 C GLY 9 N ? ? P ALY 8 P GLY 9 1_555 ? ? ? ? ? ? ? 1.326 ? covale5 covale both ? D GLY 4 C ? ? ? 1_555 D ALY 5 N ? ? Q GLY 4 Q ALY 5 1_555 ? ? ? ? ? ? ? 1.328 ? covale6 covale both ? D ALY 5 C ? ? ? 1_555 D GLY 6 N ? ? Q ALY 5 Q GLY 6 1_555 ? ? ? ? ? ? ? 1.329 ? covale7 covale both ? D GLY 7 C ? ? ? 1_555 D ALY 8 N ? ? Q GLY 7 Q ALY 8 1_555 ? ? ? ? ? ? ? 1.331 ? covale8 covale both ? D ALY 8 C ? ? ? 1_555 D GLY 9 N ? ? Q ALY 8 Q GLY 9 1_555 ? ? ? ? ? ? ? 1.330 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 2WP2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2WP2 _atom_sites.fract_transf_matrix[1][1] 0.020287 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016333 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010213 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 17 ? ? ? A . n A 1 2 TYR 2 18 18 TYR TYR A . n A 1 3 ILE 3 19 19 ILE ILE A . n A 1 4 ASN 4 20 20 ASN ASN A . n A 1 5 THR 5 21 21 THR THR A . n A 1 6 LYS 6 22 ? ? ? A . n A 1 7 LYS 7 23 ? ? ? A . n A 1 8 SER 8 24 ? ? ? A . n A 1 9 GLY 9 25 ? ? ? A . n A 1 10 ARG 10 26 ? ? ? A . n A 1 11 LEU 11 27 27 LEU LEU A . n A 1 12 THR 12 28 28 THR THR A . n A 1 13 ASN 13 29 29 ASN ASN A . n A 1 14 GLN 14 30 30 GLN GLN A . n A 1 15 LEU 15 31 31 LEU LEU A . n A 1 16 GLN 16 32 32 GLN GLN A . n A 1 17 PHE 17 33 33 PHE PHE A . n A 1 18 LEU 18 34 34 LEU LEU A . n A 1 19 GLN 19 35 35 GLN GLN A . n A 1 20 ARG 20 36 36 ARG ARG A . n A 1 21 VAL 21 37 37 VAL VAL A . n A 1 22 VAL 22 38 38 VAL VAL A . n A 1 23 LEU 23 39 39 LEU LEU A . n A 1 24 LYS 24 40 40 LYS LYS A . n A 1 25 ALA 25 41 41 ALA ALA A . n A 1 26 LEU 26 42 42 LEU LEU A . n A 1 27 TRP 27 43 43 TRP TRP A . n A 1 28 LYS 28 44 44 LYS LYS A . n A 1 29 HIS 29 45 45 HIS HIS A . n A 1 30 GLY 30 46 46 GLY GLY A . n A 1 31 PHE 31 47 47 PHE PHE A . n A 1 32 SER 32 48 48 SER SER A . n A 1 33 TRP 33 49 49 TRP TRP A . n A 1 34 PRO 34 50 50 PRO PRO A . n A 1 35 PHE 35 51 51 PHE PHE A . n A 1 36 GLN 36 52 52 GLN GLN A . n A 1 37 GLN 37 53 53 GLN GLN A . n A 1 38 PRO 38 54 54 PRO PRO A . n A 1 39 VAL 39 55 55 VAL VAL A . n A 1 40 ASP 40 56 56 ASP ASP A . n A 1 41 ALA 41 57 57 ALA ALA A . n A 1 42 VAL 42 58 58 VAL VAL A . n A 1 43 LYS 43 59 59 LYS LYS A . n A 1 44 LEU 44 60 60 LEU LEU A . n A 1 45 LYS 45 61 61 LYS LYS A . n A 1 46 LEU 46 62 62 LEU LEU A . n A 1 47 PRO 47 63 63 PRO PRO A . n A 1 48 ASP 48 64 64 ASP ASP A . n A 1 49 TYR 49 65 65 TYR TYR A . n A 1 50 TYR 50 66 66 TYR TYR A . n A 1 51 THR 51 67 67 THR THR A . n A 1 52 ILE 52 68 68 ILE ILE A . n A 1 53 ILE 53 69 69 ILE ILE A . n A 1 54 LYS 54 70 70 LYS LYS A . n A 1 55 THR 55 71 71 THR THR A . n A 1 56 PRO 56 72 72 PRO PRO A . n A 1 57 MET 57 73 73 MET MET A . n A 1 58 ASP 58 74 74 ASP ASP A . n A 1 59 LEU 59 75 75 LEU LEU A . n A 1 60 ASN 60 76 76 ASN ASN A . n A 1 61 THR 61 77 77 THR THR A . n A 1 62 ILE 62 78 78 ILE ILE A . n A 1 63 LYS 63 79 79 LYS LYS A . n A 1 64 LYS 64 80 80 LYS LYS A . n A 1 65 ARG 65 81 81 ARG ARG A . n A 1 66 LEU 66 82 82 LEU LEU A . n A 1 67 GLU 67 83 83 GLU GLU A . n A 1 68 ASN 68 84 84 ASN ASN A . n A 1 69 LYS 69 85 85 LYS LYS A . n A 1 70 TYR 70 86 86 TYR TYR A . n A 1 71 TYR 71 87 87 TYR TYR A . n A 1 72 GLU 72 88 88 GLU GLU A . n A 1 73 LYS 73 89 89 LYS LYS A . n A 1 74 ALA 74 90 90 ALA ALA A . n A 1 75 SER 75 91 91 SER SER A . n A 1 76 GLU 76 92 92 GLU GLU A . n A 1 77 CYS 77 93 93 CYS CYS A . n A 1 78 ILE 78 94 94 ILE ILE A . n A 1 79 GLU 79 95 95 GLU GLU A . n A 1 80 ASP 80 96 96 ASP ASP A . n A 1 81 PHE 81 97 97 PHE PHE A . n A 1 82 ASN 82 98 98 ASN ASN A . n A 1 83 THR 83 99 99 THR THR A . n A 1 84 MET 84 100 100 MET MET A . n A 1 85 PHE 85 101 101 PHE PHE A . n A 1 86 SER 86 102 102 SER SER A . n A 1 87 ASN 87 103 103 ASN ASN A . n A 1 88 CYS 88 104 104 CYS CYS A . n A 1 89 TYR 89 105 105 TYR TYR A . n A 1 90 LEU 90 106 106 LEU LEU A . n A 1 91 TYR 91 107 107 TYR TYR A . n A 1 92 ASN 92 108 108 ASN ASN A . n A 1 93 LYS 93 109 109 LYS LYS A . n A 1 94 THR 94 110 110 THR THR A . n A 1 95 GLY 95 111 111 GLY GLY A . n A 1 96 ASP 96 112 112 ASP ASP A . n A 1 97 ASP 97 113 113 ASP ASP A . n A 1 98 ILE 98 114 114 ILE ILE A . n A 1 99 VAL 99 115 115 VAL VAL A . n A 1 100 VAL 100 116 116 VAL VAL A . n A 1 101 MET 101 117 117 MET MET A . n A 1 102 ALA 102 118 118 ALA ALA A . n A 1 103 GLN 103 119 119 GLN GLN A . n A 1 104 ALA 104 120 120 ALA ALA A . n A 1 105 LEU 105 121 121 LEU LEU A . n A 1 106 GLU 106 122 122 GLU GLU A . n A 1 107 LYS 107 123 123 LYS LYS A . n A 1 108 LEU 108 124 124 LEU LEU A . n A 1 109 PHE 109 125 125 PHE PHE A . n A 1 110 MET 110 126 126 MET MET A . n A 1 111 GLN 111 127 127 GLN GLN A . n A 1 112 LYS 112 128 128 LYS LYS A . n A 1 113 LEU 113 129 129 LEU LEU A . n A 1 114 SER 114 130 130 SER SER A . n A 1 115 GLN 115 131 131 GLN GLN A . n A 1 116 MET 116 132 132 MET MET A . n A 1 117 PRO 117 133 133 PRO PRO A . n A 1 118 GLN 118 134 134 GLN GLN A . n A 1 119 GLU 119 135 135 GLU GLU A . n A 1 120 GLU 120 136 136 GLU GLU A . n B 1 1 GLU 1 17 ? ? ? B . n B 1 2 TYR 2 18 ? ? ? B . n B 1 3 ILE 3 19 ? ? ? B . n B 1 4 ASN 4 20 ? ? ? B . n B 1 5 THR 5 21 ? ? ? B . n B 1 6 LYS 6 22 ? ? ? B . n B 1 7 LYS 7 23 ? ? ? B . n B 1 8 SER 8 24 ? ? ? B . n B 1 9 GLY 9 25 ? ? ? B . n B 1 10 ARG 10 26 ? ? ? B . n B 1 11 LEU 11 27 27 LEU LEU B . n B 1 12 THR 12 28 28 THR THR B . n B 1 13 ASN 13 29 29 ASN ASN B . n B 1 14 GLN 14 30 30 GLN GLN B . n B 1 15 LEU 15 31 31 LEU LEU B . n B 1 16 GLN 16 32 32 GLN GLN B . n B 1 17 PHE 17 33 33 PHE PHE B . n B 1 18 LEU 18 34 34 LEU LEU B . n B 1 19 GLN 19 35 35 GLN GLN B . n B 1 20 ARG 20 36 36 ARG ARG B . n B 1 21 VAL 21 37 37 VAL VAL B . n B 1 22 VAL 22 38 38 VAL VAL B . n B 1 23 LEU 23 39 39 LEU LEU B . n B 1 24 LYS 24 40 40 LYS LYS B . n B 1 25 ALA 25 41 41 ALA ALA B . n B 1 26 LEU 26 42 42 LEU LEU B . n B 1 27 TRP 27 43 43 TRP TRP B . n B 1 28 LYS 28 44 44 LYS LYS B . n B 1 29 HIS 29 45 45 HIS HIS B . n B 1 30 GLY 30 46 46 GLY GLY B . n B 1 31 PHE 31 47 47 PHE PHE B . n B 1 32 SER 32 48 48 SER SER B . n B 1 33 TRP 33 49 49 TRP TRP B . n B 1 34 PRO 34 50 50 PRO PRO B . n B 1 35 PHE 35 51 51 PHE PHE B . n B 1 36 GLN 36 52 52 GLN GLN B . n B 1 37 GLN 37 53 53 GLN GLN B . n B 1 38 PRO 38 54 54 PRO PRO B . n B 1 39 VAL 39 55 55 VAL VAL B . n B 1 40 ASP 40 56 56 ASP ASP B . n B 1 41 ALA 41 57 57 ALA ALA B . n B 1 42 VAL 42 58 58 VAL VAL B . n B 1 43 LYS 43 59 59 LYS LYS B . n B 1 44 LEU 44 60 60 LEU LEU B . n B 1 45 LYS 45 61 61 LYS LYS B . n B 1 46 LEU 46 62 62 LEU LEU B . n B 1 47 PRO 47 63 63 PRO PRO B . n B 1 48 ASP 48 64 64 ASP ASP B . n B 1 49 TYR 49 65 65 TYR TYR B . n B 1 50 TYR 50 66 66 TYR TYR B . n B 1 51 THR 51 67 67 THR THR B . n B 1 52 ILE 52 68 68 ILE ILE B . n B 1 53 ILE 53 69 69 ILE ILE B . n B 1 54 LYS 54 70 70 LYS LYS B . n B 1 55 THR 55 71 71 THR THR B . n B 1 56 PRO 56 72 72 PRO PRO B . n B 1 57 MET 57 73 73 MET MET B . n B 1 58 ASP 58 74 74 ASP ASP B . n B 1 59 LEU 59 75 75 LEU LEU B . n B 1 60 ASN 60 76 76 ASN ASN B . n B 1 61 THR 61 77 77 THR THR B . n B 1 62 ILE 62 78 78 ILE ILE B . n B 1 63 LYS 63 79 79 LYS LYS B . n B 1 64 LYS 64 80 80 LYS LYS B . n B 1 65 ARG 65 81 81 ARG ARG B . n B 1 66 LEU 66 82 82 LEU LEU B . n B 1 67 GLU 67 83 83 GLU GLU B . n B 1 68 ASN 68 84 84 ASN ASN B . n B 1 69 LYS 69 85 85 LYS LYS B . n B 1 70 TYR 70 86 86 TYR TYR B . n B 1 71 TYR 71 87 87 TYR TYR B . n B 1 72 GLU 72 88 88 GLU GLU B . n B 1 73 LYS 73 89 89 LYS LYS B . n B 1 74 ALA 74 90 90 ALA ALA B . n B 1 75 SER 75 91 91 SER SER B . n B 1 76 GLU 76 92 92 GLU GLU B . n B 1 77 CYS 77 93 93 CYS CYS B . n B 1 78 ILE 78 94 94 ILE ILE B . n B 1 79 GLU 79 95 95 GLU GLU B . n B 1 80 ASP 80 96 96 ASP ASP B . n B 1 81 PHE 81 97 97 PHE PHE B . n B 1 82 ASN 82 98 98 ASN ASN B . n B 1 83 THR 83 99 99 THR THR B . n B 1 84 MET 84 100 100 MET MET B . n B 1 85 PHE 85 101 101 PHE PHE B . n B 1 86 SER 86 102 102 SER SER B . n B 1 87 ASN 87 103 103 ASN ASN B . n B 1 88 CYS 88 104 104 CYS CYS B . n B 1 89 TYR 89 105 105 TYR TYR B . n B 1 90 LEU 90 106 106 LEU LEU B . n B 1 91 TYR 91 107 107 TYR TYR B . n B 1 92 ASN 92 108 108 ASN ASN B . n B 1 93 LYS 93 109 109 LYS LYS B . n B 1 94 THR 94 110 110 THR THR B . n B 1 95 GLY 95 111 111 GLY GLY B . n B 1 96 ASP 96 112 112 ASP ASP B . n B 1 97 ASP 97 113 113 ASP ASP B . n B 1 98 ILE 98 114 114 ILE ILE B . n B 1 99 VAL 99 115 115 VAL VAL B . n B 1 100 VAL 100 116 116 VAL VAL B . n B 1 101 MET 101 117 117 MET MET B . n B 1 102 ALA 102 118 118 ALA ALA B . n B 1 103 GLN 103 119 119 GLN GLN B . n B 1 104 ALA 104 120 120 ALA ALA B . n B 1 105 LEU 105 121 121 LEU LEU B . n B 1 106 GLU 106 122 122 GLU GLU B . n B 1 107 LYS 107 123 123 LYS LYS B . n B 1 108 LEU 108 124 124 LEU LEU B . n B 1 109 PHE 109 125 125 PHE PHE B . n B 1 110 MET 110 126 126 MET MET B . n B 1 111 GLN 111 127 127 GLN GLN B . n B 1 112 LYS 112 128 128 LYS LYS B . n B 1 113 LEU 113 129 129 LEU LEU B . n B 1 114 SER 114 130 130 SER SER B . n B 1 115 GLN 115 131 131 GLN GLN B . n B 1 116 MET 116 132 132 MET MET B . n B 1 117 PRO 117 133 133 PRO PRO B . n B 1 118 GLN 118 134 134 GLN GLN B . n B 1 119 GLU 119 135 135 GLU GLU B . n B 1 120 GLU 120 136 136 GLU GLU B . n C 2 1 SER 1 1 ? ? ? P . n C 2 2 GLY 2 2 ? ? ? P . n C 2 3 ARG 3 3 ? ? ? P . n C 2 4 GLY 4 4 4 GLY GLY P . n C 2 5 ALY 5 5 5 ALY ALY P . n C 2 6 GLY 6 6 6 GLY GLY P . n C 2 7 GLY 7 7 7 GLY GLY P . n C 2 8 ALY 8 8 8 ALY ALY P . n C 2 9 GLY 9 9 9 GLY GLY P . n C 2 10 LEU 10 10 10 LEU LEU P . n C 2 11 GLY 11 11 11 GLY GLY P . n C 2 12 LYS 12 12 12 LYS LYS P . n C 2 13 GLY 13 13 13 GLY GLY P . n C 2 14 GLY 14 14 ? ? ? P . n C 2 15 ALA 15 15 ? ? ? P . n C 2 16 LYS 16 16 ? ? ? P . n C 2 17 ARG 17 17 ? ? ? P . n C 2 18 HIS 18 18 ? ? ? P . n C 2 19 ARG 19 19 ? ? ? P . n C 2 20 LYS 20 20 ? ? ? P . n D 2 1 SER 1 1 ? ? ? Q . n D 2 2 GLY 2 2 2 GLY GLY Q . n D 2 3 ARG 3 3 3 ARG ARG Q . n D 2 4 GLY 4 4 4 GLY GLY Q . n D 2 5 ALY 5 5 5 ALY ALY Q . n D 2 6 GLY 6 6 6 GLY GLY Q . n D 2 7 GLY 7 7 7 GLY GLY Q . n D 2 8 ALY 8 8 8 ALY ALY Q . n D 2 9 GLY 9 9 9 GLY GLY Q . n D 2 10 LEU 10 10 10 LEU LEU Q . n D 2 11 GLY 11 11 11 GLY GLY Q . n D 2 12 LYS 12 12 12 LYS LYS Q . n D 2 13 GLY 13 13 13 GLY GLY Q . n D 2 14 GLY 14 14 ? ? ? Q . n D 2 15 ALA 15 15 ? ? ? Q . n D 2 16 LYS 16 16 ? ? ? Q . n D 2 17 ARG 17 17 ? ? ? Q . n D 2 18 HIS 18 18 ? ? ? Q . n D 2 19 ARG 19 19 ? ? ? Q . n D 2 20 LYS 20 20 ? ? ? Q . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HOH 1 2001 2001 HOH HOH A . E 3 HOH 2 2002 2002 HOH HOH A . E 3 HOH 3 2003 2003 HOH HOH A . E 3 HOH 4 2004 2004 HOH HOH A . E 3 HOH 5 2005 2005 HOH HOH A . E 3 HOH 6 2006 2006 HOH HOH A . E 3 HOH 7 2007 2007 HOH HOH A . E 3 HOH 8 2008 2008 HOH HOH A . E 3 HOH 9 2009 2009 HOH HOH A . E 3 HOH 10 2010 2010 HOH HOH A . E 3 HOH 11 2011 2011 HOH HOH A . E 3 HOH 12 2012 2012 HOH HOH A . E 3 HOH 13 2013 2013 HOH HOH A . E 3 HOH 14 2014 2014 HOH HOH A . E 3 HOH 15 2015 2015 HOH HOH A . E 3 HOH 16 2016 2016 HOH HOH A . E 3 HOH 17 2017 2017 HOH HOH A . E 3 HOH 18 2018 2018 HOH HOH A . E 3 HOH 19 2019 2019 HOH HOH A . E 3 HOH 20 2020 2020 HOH HOH A . E 3 HOH 21 2021 2021 HOH HOH A . E 3 HOH 22 2022 2022 HOH HOH A . E 3 HOH 23 2023 2023 HOH HOH A . E 3 HOH 24 2024 2024 HOH HOH A . E 3 HOH 25 2025 2025 HOH HOH A . E 3 HOH 26 2026 2026 HOH HOH A . E 3 HOH 27 2027 2027 HOH HOH A . E 3 HOH 28 2028 2028 HOH HOH A . E 3 HOH 29 2029 2029 HOH HOH A . E 3 HOH 30 2030 2030 HOH HOH A . E 3 HOH 31 2031 2031 HOH HOH A . E 3 HOH 32 2032 2032 HOH HOH A . E 3 HOH 33 2033 2033 HOH HOH A . E 3 HOH 34 2034 2034 HOH HOH A . E 3 HOH 35 2035 2035 HOH HOH A . E 3 HOH 36 2036 2036 HOH HOH A . E 3 HOH 37 2037 2037 HOH HOH A . E 3 HOH 38 2038 2038 HOH HOH A . E 3 HOH 39 2039 2039 HOH HOH A . E 3 HOH 40 2040 2040 HOH HOH A . E 3 HOH 41 2041 2041 HOH HOH A . E 3 HOH 42 2042 2042 HOH HOH A . E 3 HOH 43 2043 2043 HOH HOH A . E 3 HOH 44 2044 2044 HOH HOH A . E 3 HOH 45 2045 2045 HOH HOH A . E 3 HOH 46 2046 2046 HOH HOH A . E 3 HOH 47 2047 2047 HOH HOH A . E 3 HOH 48 2048 2048 HOH HOH A . F 3 HOH 1 2001 2001 HOH HOH B . F 3 HOH 2 2002 2002 HOH HOH B . F 3 HOH 3 2003 2003 HOH HOH B . F 3 HOH 4 2004 2004 HOH HOH B . F 3 HOH 5 2005 2005 HOH HOH B . F 3 HOH 6 2006 2006 HOH HOH B . F 3 HOH 7 2007 2007 HOH HOH B . F 3 HOH 8 2008 2008 HOH HOH B . F 3 HOH 9 2009 2009 HOH HOH B . F 3 HOH 10 2010 2010 HOH HOH B . F 3 HOH 11 2011 2011 HOH HOH B . F 3 HOH 12 2012 2012 HOH HOH B . F 3 HOH 13 2013 2013 HOH HOH B . F 3 HOH 14 2014 2014 HOH HOH B . F 3 HOH 15 2015 2015 HOH HOH B . F 3 HOH 16 2016 2016 HOH HOH B . F 3 HOH 17 2017 2017 HOH HOH B . F 3 HOH 18 2018 2018 HOH HOH B . F 3 HOH 19 2019 2019 HOH HOH B . F 3 HOH 20 2020 2020 HOH HOH B . F 3 HOH 21 2021 2021 HOH HOH B . F 3 HOH 22 2022 2022 HOH HOH B . F 3 HOH 23 2023 2023 HOH HOH B . F 3 HOH 24 2024 2024 HOH HOH B . F 3 HOH 25 2025 2025 HOH HOH B . F 3 HOH 26 2026 2026 HOH HOH B . F 3 HOH 27 2027 2027 HOH HOH B . F 3 HOH 28 2028 2028 HOH HOH B . F 3 HOH 29 2029 2029 HOH HOH B . F 3 HOH 30 2030 2030 HOH HOH B . F 3 HOH 31 2031 2031 HOH HOH B . F 3 HOH 32 2032 2032 HOH HOH B . F 3 HOH 33 2033 2033 HOH HOH B . F 3 HOH 34 2034 2034 HOH HOH B . F 3 HOH 35 2035 2035 HOH HOH B . F 3 HOH 36 2036 2036 HOH HOH B . F 3 HOH 37 2037 2037 HOH HOH B . F 3 HOH 38 2038 2038 HOH HOH B . F 3 HOH 39 2039 2039 HOH HOH B . F 3 HOH 40 2040 2040 HOH HOH B . F 3 HOH 41 2041 2041 HOH HOH B . F 3 HOH 42 2042 2042 HOH HOH B . F 3 HOH 43 2043 2043 HOH HOH B . F 3 HOH 44 2044 2044 HOH HOH B . F 3 HOH 45 2045 2045 HOH HOH B . F 3 HOH 46 2046 2046 HOH HOH B . F 3 HOH 47 2047 2047 HOH HOH B . F 3 HOH 48 2048 2048 HOH HOH B . F 3 HOH 49 2049 2049 HOH HOH B . F 3 HOH 50 2050 2050 HOH HOH B . F 3 HOH 51 2051 2051 HOH HOH B . F 3 HOH 52 2052 2052 HOH HOH B . F 3 HOH 53 2053 2053 HOH HOH B . G 3 HOH 1 2001 2001 HOH HOH P . G 3 HOH 2 2002 2002 HOH HOH P . G 3 HOH 3 2003 2003 HOH HOH P . G 3 HOH 4 2004 2004 HOH HOH P . G 3 HOH 5 2005 2005 HOH HOH P . H 3 HOH 1 2001 2001 HOH HOH Q . H 3 HOH 2 2002 2002 HOH HOH Q . H 3 HOH 3 2003 2003 HOH HOH Q . H 3 HOH 4 2004 2004 HOH HOH Q . H 3 HOH 5 2005 2005 HOH HOH Q . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 C ALY 5 P ALY 5 ? LYS 'N(6)-ACETYLLYSINE' 2 C ALY 8 P ALY 8 ? LYS 'N(6)-ACETYLLYSINE' 3 D ALY 5 Q ALY 5 ? LYS 'N(6)-ACETYLLYSINE' 4 D ALY 8 Q ALY 8 ? LYS 'N(6)-ACETYLLYSINE' # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E,G 2 1 B,D,F,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1020 ? 1 MORE -9.9 ? 1 'SSA (A^2)' 7430 ? 2 'ABSA (A^2)' 1170 ? 2 MORE -8.1 ? 2 'SSA (A^2)' 7450 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-09-22 2 'Structure model' 1 1 2012-03-28 3 'Structure model' 1 2 2019-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Derived calculations' 3 2 'Structure model' Other 4 2 'Structure model' 'Refinement description' 5 2 'Structure model' 'Structure summary' 6 2 'Structure model' 'Version format compliance' 7 3 'Structure model' 'Data collection' 8 3 'Structure model' 'Derived calculations' 9 3 'Structure model' 'Experimental preparation' 10 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_PDB_rev 2 3 'Structure model' database_PDB_rev_record 3 3 'Structure model' exptl_crystal_grow 4 3 'Structure model' pdbx_database_proc 5 3 'Structure model' pdbx_database_status 6 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_exptl_crystal_grow.method' 2 3 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.0 ? 1 XDS 'data reduction' . ? 2 XSCALE 'data scaling' . ? 3 MOLREP phasing . ? 4 # _pdbx_database_remark.id 650 _pdbx_database_remark.text ; HELIX DETERMINATION METHOD: AUTHOR PROVIDED. ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 37 ? ? -104.16 -63.22 2 1 THR B 28 ? ? -49.35 162.79 3 1 LEU B 62 ? ? -111.29 78.29 4 1 LYS P 12 ? ? 36.63 -166.68 5 1 ARG Q 3 ? ? -132.90 -75.61 6 1 ALY Q 8 ? ? -140.67 -9.16 7 1 LYS Q 12 ? ? 82.43 -174.40 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A TYR 18 ? CG ? A TYR 2 CG 2 1 Y 1 A TYR 18 ? CD1 ? A TYR 2 CD1 3 1 Y 1 A TYR 18 ? CD2 ? A TYR 2 CD2 4 1 Y 1 A TYR 18 ? CE1 ? A TYR 2 CE1 5 1 Y 1 A TYR 18 ? CE2 ? A TYR 2 CE2 6 1 Y 1 A TYR 18 ? CZ ? A TYR 2 CZ 7 1 Y 1 A TYR 18 ? OH ? A TYR 2 OH 8 1 Y 1 A ILE 19 ? CG1 ? A ILE 3 CG1 9 1 Y 1 A ILE 19 ? CG2 ? A ILE 3 CG2 10 1 Y 1 A ILE 19 ? CD1 ? A ILE 3 CD1 11 1 Y 1 A ASN 20 ? CG ? A ASN 4 CG 12 1 Y 1 A ASN 20 ? OD1 ? A ASN 4 OD1 13 1 Y 1 A ASN 20 ? ND2 ? A ASN 4 ND2 14 1 Y 1 A THR 21 ? CB ? A THR 5 CB 15 1 Y 1 A THR 21 ? OG1 ? A THR 5 OG1 16 1 Y 1 A THR 21 ? CG2 ? A THR 5 CG2 17 1 Y 1 P LYS 12 ? CG ? C LYS 12 CG 18 1 Y 1 P LYS 12 ? CD ? C LYS 12 CD 19 1 Y 1 P LYS 12 ? CE ? C LYS 12 CE 20 1 Y 1 P LYS 12 ? NZ ? C LYS 12 NZ 21 1 Y 1 P GLY 13 ? CA ? C GLY 13 CA 22 1 Y 1 P GLY 13 ? C ? C GLY 13 C 23 1 Y 1 P GLY 13 ? O ? C GLY 13 O 24 1 Y 1 Q LYS 12 ? CG ? D LYS 12 CG 25 1 Y 1 Q LYS 12 ? CD ? D LYS 12 CD 26 1 Y 1 Q LYS 12 ? CE ? D LYS 12 CE 27 1 Y 1 Q LYS 12 ? NZ ? D LYS 12 NZ 28 1 Y 1 Q GLY 13 ? CA ? D GLY 13 CA 29 1 Y 1 Q GLY 13 ? C ? D GLY 13 C 30 1 Y 1 Q GLY 13 ? O ? D GLY 13 O # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 17 ? A GLU 1 2 1 Y 1 A LYS 22 ? A LYS 6 3 1 Y 1 A LYS 23 ? A LYS 7 4 1 Y 1 A SER 24 ? A SER 8 5 1 Y 1 A GLY 25 ? A GLY 9 6 1 Y 1 A ARG 26 ? A ARG 10 7 1 Y 1 B GLU 17 ? B GLU 1 8 1 Y 1 B TYR 18 ? B TYR 2 9 1 Y 1 B ILE 19 ? B ILE 3 10 1 Y 1 B ASN 20 ? B ASN 4 11 1 Y 1 B THR 21 ? B THR 5 12 1 Y 1 B LYS 22 ? B LYS 6 13 1 Y 1 B LYS 23 ? B LYS 7 14 1 Y 1 B SER 24 ? B SER 8 15 1 Y 1 B GLY 25 ? B GLY 9 16 1 Y 1 B ARG 26 ? B ARG 10 17 1 Y 1 P SER 1 ? C SER 1 18 1 Y 1 P GLY 2 ? C GLY 2 19 1 Y 1 P ARG 3 ? C ARG 3 20 1 Y 1 P GLY 14 ? C GLY 14 21 1 Y 1 P ALA 15 ? C ALA 15 22 1 Y 1 P LYS 16 ? C LYS 16 23 1 Y 1 P ARG 17 ? C ARG 17 24 1 Y 1 P HIS 18 ? C HIS 18 25 1 Y 1 P ARG 19 ? C ARG 19 26 1 Y 1 P LYS 20 ? C LYS 20 27 1 Y 1 Q SER 1 ? D SER 1 28 1 Y 1 Q GLY 14 ? D GLY 14 29 1 Y 1 Q ALA 15 ? D ALA 15 30 1 Y 1 Q LYS 16 ? D LYS 16 31 1 Y 1 Q ARG 17 ? D ARG 17 32 1 Y 1 Q HIS 18 ? D HIS 18 33 1 Y 1 Q ARG 19 ? D ARG 19 34 1 Y 1 Q LYS 20 ? D LYS 20 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #