HEADER TRANSCRIPTION 12-AUG-09 2WPZ TITLE GCN4 LEUCINE ZIPPER MUTANT WITH TWO VXXNXXX MOTIFS COORDINATING TITLE 2 CHLORIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENERAL CONTROL PROTEIN GCN4; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: COILED-COIL DOMAIN, RESIDUES 249-281; COMPND 5 SYNONYM: AMINO ACID BIOSYNTHESIS REGULATORY PROTEIN, GCN4 LEUCINE COMPND 6 ZIPPER MUTANT; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: N-TERMINAL ACETYL GROUP SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 4932 KEYWDS AMINO-ACID BIOSYNTHESIS, TRANSCRIPTION REGULATION, ION COORDINATION, KEYWDS 2 POLAR CORE RESIDUES, TRANSCRIPTION, PROTEIN EXPORT, PHOSPHOPROTEIN, KEYWDS 3 TAA, NUCLEUS, ACTIVATOR, COILED COIL, DNA-BINDING, TRIMERIC KEYWDS 4 AUTOTRANSPORTER ADHESIN EXPDTA X-RAY DIFFRACTION AUTHOR K.ZETH,M.D.HARTMANN,R.ALBRECHT,A.N.LUPAS,B.HERNANDEZ ALVAREZ REVDAT 2 20-DEC-23 2WPZ 1 REMARK LINK REVDAT 1 03-NOV-09 2WPZ 0 JRNL AUTH M.D.HARTMANN,O.RIDDERBUSCH,K.ZETH,R.ALBRECHT,O.TESTA, JRNL AUTH 2 D.N.WOOLFSON,G.SAUER,S.DUNIN-HORKAWICZ,A.N.LUPAS,B.H.ALVAREZ JRNL TITL A COILED-COIL MOTIF THAT SEQUESTERS IONS TO THE HYDROPHOBIC JRNL TITL 2 CORE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 16950 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19805097 JRNL DOI 10.1073/PNAS.0907256106 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19310 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1453 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1383 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3160 REMARK 3 BIN FREE R VALUE SET COUNT : 104 REMARK 3 BIN FREE R VALUE : 0.3390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 814 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 102 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : -0.06000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.04000 REMARK 3 B13 (A**2) : 0.37000 REMARK 3 B23 (A**2) : -0.30000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.067 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.064 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.472 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 856 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 627 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1136 ; 1.369 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1548 ; 1.325 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 93 ; 4.215 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 48 ;36.243 ;25.833 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 205 ;15.699 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;14.903 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 129 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 877 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 143 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 216 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 569 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 399 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 491 ; 0.077 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 71 ; 0.194 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 23 ; 0.192 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 66 ; 0.288 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.153 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 515 ; 4.414 ;12.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 195 ; 1.828 ;12.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 804 ; 5.175 ;18.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 374 ; 6.184 ;24.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 332 ; 9.061 ;36.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 889 ; 2.776 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 2 ; 2.488 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 854 ; 5.383 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2WPZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1290040735. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.009 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20616 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.98 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.850 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1GCM REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4000, 200 MM NA-ACETATE, 0.1 M REMARK 280 TRIS, PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LEU 260 TO ASN REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASN 264 TO VAL REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LEU 267 TO ASN REMARK 400 ENGINEERED RESIDUE IN CHAIN B, LEU 260 TO ASN REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ASN 264 TO VAL REMARK 400 ENGINEERED RESIDUE IN CHAIN B, LEU 267 TO ASN REMARK 400 ENGINEERED RESIDUE IN CHAIN C, LEU 260 TO ASN REMARK 400 ENGINEERED RESIDUE IN CHAIN C, ASN 264 TO VAL REMARK 400 ENGINEERED RESIDUE IN CHAIN C, LEU 267 TO ASN REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 32 REMARK 465 ARG A 33 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 32 CG CD OE1 OE2 REMARK 470 ARG B 33 N CA C O CB CG REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1032 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1033 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RB5 RELATED DB: PDB REMARK 900 ANTIPARALLEL TRIMER OF GCN4-LEUCINE ZIPPER CORE MUTANT ASN16A REMARK 900 TRIGONAL FORM REMARK 900 RELATED ID: 1GCM RELATED DB: PDB REMARK 900 GCN4 LEUCINE ZIPPER CORE MUTANT P-LI REMARK 900 RELATED ID: 1UNT RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1LLM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A ZIF23-GCN4 CHIMERA BOUND TO DNA REMARK 900 RELATED ID: 2ZTA RELATED DB: PDB REMARK 900 GCN4 LEUCINE ZIPPER REMARK 900 RELATED ID: 1UO2 RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1UNW RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 2CCF RELATED DB: PDB REMARK 900 ANTIPARALLEL CONFIGURATION OF PLI E20S REMARK 900 RELATED ID: 1CE9 RELATED DB: PDB REMARK 900 HELIX CAPPING IN THE GCN4 LEUCINE ZIPPER REMARK 900 RELATED ID: 2WG6 RELATED DB: PDB REMARK 900 PROTEASOME-ACTIVATING NUCLEOTIDASE (PAN) N- DOMAIN (57-134) FROM REMARK 900 ARCHAEOGLOBUS FULGIDUS FUSED TO GCN4, P61A MUTANT REMARK 900 RELATED ID: 1TMZ RELATED DB: PDB REMARK 900 TMZIP: A CHIMERIC PEPTIDE MODEL OF THE N- TERMINUS OF ALPHA REMARK 900 TROPOMYOSIN, NMR, 15 STRUCTURES REMARK 900 RELATED ID: 1ZIL RELATED DB: PDB REMARK 900 GCN4-LEUCINE ZIPPER CORE MUTANT ASN16GLN IN THE DIMERIC STATE REMARK 900 RELATED ID: 2CCN RELATED DB: PDB REMARK 900 PLI E20C IS ANTIPARALLEL REMARK 900 RELATED ID: 1W5L RELATED DB: PDB REMARK 900 AN ANTI-PARALLEL TO PARALLEL SWITCH. REMARK 900 RELATED ID: 1RB6 RELATED DB: PDB REMARK 900 ANTIPARALLEL TRIMER OF GCN4-LEUCINE ZIPPER CORE MUTANT ASN16A REMARK 900 TETRAGONAL FORM REMARK 900 RELATED ID: 1ZIJ RELATED DB: PDB REMARK 900 GCN4-LEUCINE ZIPPER CORE MUTANT ASN16ABA IN THE TRIMERIC STATE REMARK 900 RELATED ID: 1UNZ RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1W5K RELATED DB: PDB REMARK 900 AN ANTI-PARALLEL FOUR HELIX BUNDLE REMARK 900 RELATED ID: 1PIQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GCN4-PIQ, A TRIMERIC COILED COIL WITH BURIED REMARK 900 POLAR RESIDUES REMARK 900 RELATED ID: 1UNX RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1UNY RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1ZIK RELATED DB: PDB REMARK 900 GCN4-LEUCINE ZIPPER CORE MUTANT ASN16LYS IN THE DIMERIC STATE REMARK 900 RELATED ID: 1YSA RELATED DB: PDB REMARK 900 GCN4 (BASIC REGION, LEUCINE ZIPPER) COMPLEX WITH AP-1 REMARK 900 DEOXYRIBONUCLEIC ACID REMARK 900 RELATED ID: 1W5H RELATED DB: PDB REMARK 900 AN ANTI-PARALLEL FOUR HELIX BUNDLE. REMARK 900 RELATED ID: 1IJ2 RELATED DB: PDB REMARK 900 GCN4-PVTL COILED-COIL TRIMER WITH THREONINE AT THE A(16)POSITION REMARK 900 RELATED ID: 1UNV RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1UO3 RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 2CCE RELATED DB: PDB REMARK 900 PARALLEL CONFIGURATION OF PLI E20S REMARK 900 RELATED ID: 1IJ0 RELATED DB: PDB REMARK 900 COILED COIL TRIMER GCN4-PVLS SER AT BURIED D POSITION REMARK 900 RELATED ID: 1W5G RELATED DB: PDB REMARK 900 AN ANTI-PARALLEL FOUR HELIX BUNDLE ( ACETIMIDE MODIFICATION). REMARK 900 RELATED ID: 1UNU RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 2B22 RELATED DB: PDB REMARK 900 ANTIPARALLEL FOUR-STRANDED COILED COIL SPECIFIED BY A 3-3- REMARK 900 1HYDROPHOBIC HEPTAD REPEAT REMARK 900 RELATED ID: 1LD4 RELATED DB: PDB REMARK 900 PLACEMENT OF THE STRUCTURAL PROTEINS IN SINDBIS VIRUS REMARK 900 RELATED ID: 2B1F RELATED DB: PDB REMARK 900 ANTIPARALLEL FOUR-STRANDED COILED COIL SPECIFIED BY A 3-3- REMARK 900 1HYDROPHOBIC HEPTAD REPEAT REMARK 900 RELATED ID: 2WG5 RELATED DB: PDB REMARK 900 PROTEASOME-ACTIVATING NUCLEOTIDASE (PAN) N- DOMAIN (57-134) FROM REMARK 900 ARCHAEOGLOBUS FULGIDUS FUSED TO GCN4 REMARK 900 RELATED ID: 1UO0 RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1UO1 RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1SWI RELATED DB: PDB REMARK 900 GCN4-LEUCINE ZIPPER CORE MUTANT AS N16A COMPLEXED WITH BENZENE REMARK 900 RELATED ID: 1W5I RELATED DB: PDB REMARK 900 ABA DOES NOT AFFECT TOPOLOGY OF PLI. REMARK 900 RELATED ID: 2DGC RELATED DB: PDB REMARK 900 GCN4 BASIC DOMAIN, LEUCINE ZIPPER COMPLEXED WITH ATF/CREB SITE REMARK 900 DEOXYRIBONUCLEIC ACID REMARK 900 RELATED ID: 2D3E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE C-TERMINAL FRAGMENT OF RABBITSKELETAL REMARK 900 ALPHA-TROPOMYOSIN REMARK 900 RELATED ID: 1NKN RELATED DB: PDB REMARK 900 VISUALIZING AN UNSTABLE COILED COIL: THE CRYSTAL STRUCTUREOF AN N- REMARK 900 TERMINAL SEGMENT OF THE SCALLOP MYOSIN ROD REMARK 900 RELATED ID: 1GCL RELATED DB: PDB REMARK 900 GCN4 LEUCINE ZIPPER CORE MUTANT P-LI REMARK 900 RELATED ID: 1ZII RELATED DB: PDB REMARK 900 GCN4-LEUCINE ZIPPER CORE MUTANT ASN16ABA IN THE DIMERIC STATE REMARK 900 RELATED ID: 1KQL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE C-TERMINAL REGION OF STRIATEDMUSCLE ALPHA- REMARK 900 TROPOMYOSIN AT 2.7 ANGSTROM RESOLUTION REMARK 900 RELATED ID: 1UO5 RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1RB4 RELATED DB: PDB REMARK 900 ANTIPARALLEL TRIMER OF GCN4-LEUCINE ZIPPER CORE MUTANT ASN16A REMARK 900 TETRAGONAL AUTOMATIC SOLUTION REMARK 900 RELATED ID: 1IHQ RELATED DB: PDB REMARK 900 GLYTM1BZIP: A CHIMERIC PEPTIDE MODEL OF THE N-TERMINUS OF ARAT REMARK 900 SHORT ALPHA TROPOMYOSIN WITH THE N-TERMINUS ENCODED BYEXON 1B REMARK 900 RELATED ID: 1UO4 RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1IJ3 RELATED DB: PDB REMARK 900 GCN4-PVSL COILED-COIL TRIMER WITH SERINE AT THE A(16)POSITION REMARK 900 RELATED ID: 1ZTA RELATED DB: PDB REMARK 900 LEUCINE ZIPPER MONOMER (NMR, 20 STRUCTURES) REMARK 900 RELATED ID: 1W5J RELATED DB: PDB REMARK 900 AN ANTI-PARALLEL FOUR HELIX BUNDLE REMARK 900 RELATED ID: 1IJ1 RELATED DB: PDB REMARK 900 GCN4-PVLT COILED-COIL TRIMER WITH THREONINE AT THE D(12)POSITION REMARK 900 RELATED ID: 1DGC RELATED DB: PDB REMARK 900 GCN4 LEUCINE ZIPPER COMPLEXED WITH SPECIFIC ATF/CREB SITE REMARK 900 DEOXYRIBONUCLEIC ACID REMARK 900 RELATED ID: 1RB1 RELATED DB: PDB REMARK 900 GCN4-LEUCINE ZIPPER CORE MUTANT AS N16A TRIGONAL AUTOMATICSOLUTION REMARK 900 RELATED ID: 1ZIM RELATED DB: PDB REMARK 900 GCN4-LEUCINE ZIPPER CORE MUTANT ASN16GLN IN THE TRIMERIC STATE REMARK 900 RELATED ID: 1GZL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF C14LINKMID/IQN17: A CROSS-LINKED INHIBITOR OF REMARK 900 HIV-1 ENTRY BOUND TO THE GP41 HYDROPHOBIC POCKET REMARK 900 RELATED ID: 2BNI RELATED DB: PDB REMARK 900 PLI MUTANT E20C L16G Y17H, ANTIPARALLEL REMARK 900 RELATED ID: 2WPS RELATED DB: PDB REMARK 900 SALMONELLA ENTERICA SADA 483-523 FUSED TO GCN4 ADAPTORS (SADAK3B-V2, REMARK 900 OUT-OF-REGISTER FUSION) REMARK 900 RELATED ID: 2WPY RELATED DB: PDB REMARK 900 GCN4 LEUCINE ZIPPER MUTANT WITH ONE VXXNXXX MOTIF COORDINATING REMARK 900 CHLORIDE REMARK 900 RELATED ID: 2WQ0 RELATED DB: PDB REMARK 900 GCN4 LEUCINE ZIPPER MUTANT WITH THREE IXXNTXX MOTIFS COORDINATING REMARK 900 CHLORIDE REMARK 900 RELATED ID: 2WQ3 RELATED DB: PDB REMARK 900 GCN4 LEUCINE ZIPPER MUTANT WITH THREE IXXNTXX MOTIFS COORDINATING REMARK 900 CHLORIDE AND NITRATE REMARK 900 RELATED ID: 2WPQ RELATED DB: PDB REMARK 900 SALMONELLA ENTERICA SADA 479-519 FUSED TO GCN4 ADAPTORS (SADAK3, IN- REMARK 900 REGISTER FUSION) REMARK 900 RELATED ID: 2WQ1 RELATED DB: PDB REMARK 900 GCN4 LEUCINE ZIPPER MUTANT WITH THREE IXXNTXX MOTIFS COORDINATING REMARK 900 BROMIDE REMARK 900 RELATED ID: 2WQ2 RELATED DB: PDB REMARK 900 GCN4 LEUCINE ZIPPER MUTANT WITH THREE IXXNTXX MOTIFS COORDINATING REMARK 900 IODIDE REMARK 900 RELATED ID: 2WPR RELATED DB: PDB REMARK 900 SALMONELLA ENTERICA SADA 483-523 FUSED TO GCN4 ADAPTORS (SADAK3B-V1, REMARK 900 OUT-OF-REGISTER FUSION) DBREF 2WPZ A 0 0 PDB 2WPZ 2WPZ 0 0 DBREF 2WPZ A 1 33 UNP P03069 GCN4_YEAST 249 281 DBREF 2WPZ B 0 0 PDB 2WPZ 2WPZ 0 0 DBREF 2WPZ B 1 33 UNP P03069 GCN4_YEAST 249 281 DBREF 2WPZ C 0 0 PDB 2WPZ 2WPZ 0 0 DBREF 2WPZ C 1 33 UNP P03069 GCN4_YEAST 249 281 SEQADV 2WPZ ASN A 12 UNP P03069 LEU 260 ENGINEERED MUTATION SEQADV 2WPZ VAL A 16 UNP P03069 ASN 264 ENGINEERED MUTATION SEQADV 2WPZ ASN A 19 UNP P03069 LEU 267 ENGINEERED MUTATION SEQADV 2WPZ ASN B 12 UNP P03069 LEU 260 ENGINEERED MUTATION SEQADV 2WPZ VAL B 16 UNP P03069 ASN 264 ENGINEERED MUTATION SEQADV 2WPZ ASN B 19 UNP P03069 LEU 267 ENGINEERED MUTATION SEQADV 2WPZ ASN C 12 UNP P03069 LEU 260 ENGINEERED MUTATION SEQADV 2WPZ VAL C 16 UNP P03069 ASN 264 ENGINEERED MUTATION SEQADV 2WPZ ASN C 19 UNP P03069 LEU 267 ENGINEERED MUTATION SEQRES 1 A 34 ACE ARG MET LYS GLN LEU GLU ASP LYS VAL GLU GLU ASN SEQRES 2 A 34 LEU SER LYS VAL TYR HIS ASN GLU ASN GLU VAL ALA ARG SEQRES 3 A 34 LEU LYS LYS LEU VAL GLY GLU ARG SEQRES 1 B 34 ACE ARG MET LYS GLN LEU GLU ASP LYS VAL GLU GLU ASN SEQRES 2 B 34 LEU SER LYS VAL TYR HIS ASN GLU ASN GLU VAL ALA ARG SEQRES 3 B 34 LEU LYS LYS LEU VAL GLY GLU ARG SEQRES 1 C 34 ACE ARG MET LYS GLN LEU GLU ASP LYS VAL GLU GLU ASN SEQRES 2 C 34 LEU SER LYS VAL TYR HIS ASN GLU ASN GLU VAL ALA ARG SEQRES 3 C 34 LEU LYS LYS LEU VAL GLY GLU ARG HET ACE A 0 3 HET ACE B 0 3 HET ACE C 0 3 HET CL A1032 1 HET CL A1033 1 HETNAM ACE ACETYL GROUP HETNAM CL CHLORIDE ION FORMUL 1 ACE 3(C2 H4 O) FORMUL 4 CL 2(CL 1-) FORMUL 6 HOH *102(H2 O) HELIX 1 1 ARG A 1 VAL A 30 1 30 HELIX 2 2 ARG B 1 VAL B 30 1 30 HELIX 3 3 ARG C 1 VAL C 30 1 30 LINK C ACE A 0 N ARG A 1 1555 1555 1.31 LINK C ACE B 0 N ARG B 1 1555 1555 1.32 LINK C ACE C 0 N ARG C 1 1555 1555 1.32 SITE 1 AC1 3 ASN A 12 ASN B 12 ASN C 12 SITE 1 AC2 4 ASN A 19 VAL B 16 ASN B 19 ASN C 19 CRYST1 25.380 25.440 33.700 83.98 84.86 78.55 P 1 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.039401 -0.007980 -0.002844 0.00000 SCALE2 0.000000 0.040106 -0.003593 0.00000 SCALE3 0.000000 0.000000 0.029913 0.00000 HETATM 1 C ACE A 0 5.822 -8.361 -20.857 1.00 14.88 C ANISOU 1 C ACE A 0 2518 1702 1432 -19 -137 142 C HETATM 2 O ACE A 0 5.444 -7.418 -20.171 1.00 14.23 O ANISOU 2 O ACE A 0 2279 1627 1501 93 -152 -111 O HETATM 3 CH3 ACE A 0 6.506 -8.175 -22.181 1.00 16.41 C ANISOU 3 CH3 ACE A 0 2337 1977 1919 65 160 21 C