HEADER TRANSFERASE 19-AUG-09 2WQD TITLE CRYSTAL STRUCTURE OF ENZYME I OF THE TITLE 2 PHOSPHOENOLPYRUVATE:SUGAR PHOSPHOTRANSFERASE SYSTEM IN THE TITLE 3 DEPHOSPHORYLATED STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOENOLPYRUVATE-PROTEIN PHOSPHOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-572 COMPND 4; COMPND 5 SYNONYM: PHOSPHOTRANSFERASE SYSTEM\, ENZYME I; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, CYTOPLASM, TRANSPORT, MAGNESIUM, TRANSFERASE, PEP- KEYWDS 2 UTILISING ENZYME, PHOSPHOTRANSFERASE SYSTEM, KEYWDS 3 METAL-BINDING, SUGAR TRANSPORT, PHOSPHOENOLPYRUVATE EXPDTA X-RAY DIFFRACTION AUTHOR A.E.OBERHOLZER,P.SCHNEIDER,C.SIEBOLD,U.BAUMANN,B.ERNI REVDAT 2 08-DEC-09 2WQD 1 JRNL REVDAT 1 13-OCT-09 2WQD 0 JRNL AUTH A.E.OBERHOLZER,P.SCHNEIDER,C.SIEBOLD,U.BAUMANN, JRNL AUTH 2 B.ERNI JRNL TITL CRYSTAL STRUCTURE OF ENZYME I OF THE JRNL TITL 2 PHOSPHOENOLPYRUVATE:SUGAR PHOSPHOTRANSFERASE JRNL TITL 3 SYSTEM IN THE DEPHOSPHORYLATED STATE. JRNL REF J.BIOL.CHEM. V. 284 33169 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19801641 JRNL DOI 10.1074/JBC.M109.057612 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.400 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.906 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.40 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.98 REMARK 3 NUMBER OF REFLECTIONS : 23406 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.2331 REMARK 3 R VALUE (WORKING SET) : 0.2282 REMARK 3 FREE R VALUE : 0.2951 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.5 REMARK 3 FREE R VALUE TEST SET COUNT : 1747 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.9095 - 5.4887 1.00 1926 153 0.1915 0.2421 REMARK 3 2 5.4887 - 4.3590 1.00 1836 149 0.1711 0.2297 REMARK 3 3 4.3590 - 3.8087 1.00 1821 149 0.1849 0.2678 REMARK 3 4 3.8087 - 3.4608 1.00 1807 142 0.2258 0.2744 REMARK 3 5 3.4608 - 3.2129 1.00 1798 146 0.2503 0.3469 REMARK 3 6 3.2129 - 3.0236 1.00 1798 149 0.2718 0.3336 REMARK 3 7 3.0236 - 2.8722 1.00 1800 142 0.2805 0.3357 REMARK 3 8 2.8722 - 2.7472 1.00 1772 144 0.2601 0.3348 REMARK 3 9 2.7472 - 2.6415 1.00 1793 144 0.2625 0.3278 REMARK 3 10 2.6415 - 2.5504 1.00 1763 143 0.2744 0.3351 REMARK 3 11 2.5504 - 2.4706 1.00 1797 143 0.2854 0.3497 REMARK 3 12 2.4706 - 2.4000 1.00 1748 143 0.3103 0.3851 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.283 REMARK 3 B_SOL : 49.786 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.26 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.02 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.3899 REMARK 3 B22 (A**2) : -0.3899 REMARK 3 B33 (A**2) : -10.6178 REMARK 3 B12 (A**2) : -0.0000 REMARK 3 B13 (A**2) : -0.0000 REMARK 3 B23 (A**2) : 0.0000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4377 REMARK 3 ANGLE : 0.661 5931 REMARK 3 CHIRALITY : 0.047 702 REMARK 3 PLANARITY : 0.002 783 REMARK 3 DIHEDRAL : 14.309 1611 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:39) REMARK 3 ORIGIN FOR THE GROUP (A): -50.1559 21.9667 -11.4602 REMARK 3 T TENSOR REMARK 3 T11: 0.2245 T22: 0.3642 REMARK 3 T33: 0.3548 T12: 0.0328 REMARK 3 T13: 0.0173 T23: -0.0530 REMARK 3 L TENSOR REMARK 3 L11: 1.5324 L22: -0.2772 REMARK 3 L33: 1.6781 L12: 0.1582 REMARK 3 L13: 0.3205 L23: 0.7134 REMARK 3 S TENSOR REMARK 3 S11: -0.3540 S12: -0.0716 S13: 0.1345 REMARK 3 S21: -0.0378 S22: 0.0417 S23: 0.1118 REMARK 3 S31: 0.1901 S32: -0.2926 S33: 0.2441 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 40:157) REMARK 3 ORIGIN FOR THE GROUP (A): -56.6714 8.3010 -7.6553 REMARK 3 T TENSOR REMARK 3 T11: 0.1044 T22: 0.3481 REMARK 3 T33: 0.2749 T12: -0.0934 REMARK 3 T13: 0.0961 T23: -0.2160 REMARK 3 L TENSOR REMARK 3 L11: 1.0221 L22: 0.2196 REMARK 3 L33: 1.4125 L12: 0.7383 REMARK 3 L13: -0.8133 L23: -1.0156 REMARK 3 S TENSOR REMARK 3 S11: -0.2569 S12: 0.1554 S13: -0.2107 REMARK 3 S21: -0.1210 S22: -0.0525 S23: 0.0010 REMARK 3 S31: 0.2347 S32: -0.5273 S33: 0.2425 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 158:252) REMARK 3 ORIGIN FOR THE GROUP (A): -33.4533 19.6047 -17.6017 REMARK 3 T TENSOR REMARK 3 T11: 0.3154 T22: 0.1566 REMARK 3 T33: 0.2182 T12: 0.0208 REMARK 3 T13: 0.0395 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 2.0593 L22: 0.3067 REMARK 3 L33: 0.9691 L12: -0.1631 REMARK 3 L13: -0.1519 L23: -0.1693 REMARK 3 S TENSOR REMARK 3 S11: -0.1044 S12: -0.1379 S13: 0.1815 REMARK 3 S21: 0.1214 S22: 0.0103 S23: -0.0578 REMARK 3 S31: 0.2447 S32: 0.0022 S33: 0.0832 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 253:343) REMARK 3 ORIGIN FOR THE GROUP (A): -26.8761 -10.0027 -8.9670 REMARK 3 T TENSOR REMARK 3 T11: 0.1661 T22: 0.8751 REMARK 3 T33: 0.2260 T12: -0.1559 REMARK 3 T13: -0.1226 T23: 0.2695 REMARK 3 L TENSOR REMARK 3 L11: 0.5068 L22: 1.9873 REMARK 3 L33: 2.7581 L12: 1.2928 REMARK 3 L13: -0.3312 L23: 1.6009 REMARK 3 S TENSOR REMARK 3 S11: 0.3703 S12: -0.2957 S13: -0.0256 REMARK 3 S21: -0.1426 S22: -0.2354 S23: -0.0328 REMARK 3 S31: 0.0772 S32: -1.5334 S33: -0.1577 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 344:572) REMARK 3 ORIGIN FOR THE GROUP (A): -21.9244 -5.9911 4.6727 REMARK 3 T TENSOR REMARK 3 T11: -0.0133 T22: 0.7022 REMARK 3 T33: 0.1636 T12: -0.1561 REMARK 3 T13: -0.0679 T23: 0.2902 REMARK 3 L TENSOR REMARK 3 L11: 0.4196 L22: 1.5119 REMARK 3 L33: 3.9015 L12: 0.2235 REMARK 3 L13: 1.0114 L23: 1.4408 REMARK 3 S TENSOR REMARK 3 S11: 0.3626 S12: -0.3548 S13: -0.1090 REMARK 3 S21: -0.0276 S22: -0.0233 S23: -0.0655 REMARK 3 S31: 0.1256 S32: -1.6190 S33: -0.2936 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2WQD COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-AUG-09. REMARK 100 THE PDBE ID CODE IS EBI-40805. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23409 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.40 REMARK 200 RESOLUTION RANGE LOW (A) : 35.91 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.1 REMARK 200 R MERGE (I) : 0.09 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.60 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.46 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.90 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M KCL 20% (W/V) PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.07333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.03667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.03667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 70.07333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.65 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 35.03667 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, HIS 191 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 365 TO SER REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 572 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 151 CG CD REMARK 470 SER A 152 OG REMARK 470 MET A 153 CG SD CE REMARK 470 ILE A 154 CG1 CG2 CD1 REMARK 470 ASP A 155 CG OD1 OD2 REMARK 470 LYS A 208 CG CD CE NZ REMARK 470 PHE A 301 CG CD1 CD2 CE1 CE2 CZ REMARK 470 MET A 304 CG SD CE REMARK 470 ARG A 306 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 307 CG OD1 OD2 REMARK 470 GLN A 308 CG CD OE1 NE2 REMARK 470 ASP A 341 CG OD1 OD2 REMARK 470 LYS A 342 CG CD CE NZ REMARK 470 GLU A 343 CG CD OE1 OE2 REMARK 470 LEU A 344 CG CD1 CD2 REMARK 470 SER A 345 OG REMARK 470 TYR A 346 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 347 CG CD1 CD2 REMARK 470 ASN A 348 CG OD1 ND2 REMARK 470 LEU A 349 CG CD1 CD2 REMARK 470 PRO A 350 CG CD REMARK 470 GLU A 351 CG CD OE1 OE2 REMARK 470 MET A 353 CG SD CE REMARK 470 PHE A 356 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 416 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 2 - O ASN A 232 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 65 -15.55 66.95 REMARK 500 LEU A 67 84.15 -174.27 REMARK 500 ASN A 150 -160.96 -167.40 REMARK 500 ASP A 155 145.26 65.33 REMARK 500 GLU A 156 -142.30 -117.81 REMARK 500 GLU A 200 50.57 35.61 REMARK 500 LYS A 208 -39.07 73.69 REMARK 500 GLN A 292 47.50 -85.62 REMARK 500 ASP A 341 58.43 -100.93 REMARK 500 GLU A 343 -101.13 -65.25 REMARK 500 SER A 345 46.39 -82.03 REMARK 500 TYR A 346 4.12 -156.78 REMARK 500 GLU A 352 120.23 48.17 REMARK 500 ALA A 361 -129.50 52.71 REMARK 500 ALA A 367 -2.56 79.41 REMARK 500 TYR A 385 -82.99 -96.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1572 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 477 OE1 REMARK 620 2 ASN A 399 OD1 133.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1572 DBREF 2WQD A 1 572 UNP P51183 PT1_STAAU 1 572 SEQADV 2WQD ALA A 191 UNP P51183 HIS 191 ENGINEERED MUTATION SEQADV 2WQD SER A 365 UNP P51183 CYS 365 ENGINEERED MUTATION SEQRES 1 A 572 MET SER LYS LEU ILE LYS GLY ILE ALA ALA SER ASP GLY SEQRES 2 A 572 VAL ALA ILE ALA LYS ALA TYR LEU LEU VAL GLU PRO ASP SEQRES 3 A 572 LEU THR PHE ASP LYS ASN GLU LYS VAL THR ASP VAL GLU SEQRES 4 A 572 GLY GLU VAL ALA LYS PHE ASN SER ALA ILE GLU ALA SER SEQRES 5 A 572 LYS VAL GLU LEU THR LYS ILE ARG ASN ASN ALA GLU VAL SEQRES 6 A 572 GLN LEU GLY ALA ASP LYS ALA ALA ILE PHE ASP ALA HIS SEQRES 7 A 572 LEU LEU VAL LEU ASP ASP PRO GLU LEU ILE GLN PRO ILE SEQRES 8 A 572 GLN ASP LYS ILE LYS ASN GLU ASN ALA ASN ALA ALA THR SEQRES 9 A 572 ALA LEU THR ASP VAL THR THR GLN PHE VAL THR ILE PHE SEQRES 10 A 572 GLU SER MET ASP ASN GLU TYR MET LYS GLU ARG ALA ALA SEQRES 11 A 572 ASP ILE ARG ASP VAL SER LYS ARG VAL LEU SER HIS ILE SEQRES 12 A 572 LEU GLY VAL GLU LEU PRO ASN PRO SER MET ILE ASP GLU SEQRES 13 A 572 SER VAL VAL ILE VAL GLY ASN ASP LEU THR PRO SER ASP SEQRES 14 A 572 THR ALA GLN LEU ASN LYS GLU PHE VAL GLN GLY PHE ALA SEQRES 15 A 572 THR ASN ILE GLY GLY ARG THR SER ALA SER ALA ILE MET SEQRES 16 A 572 SER ARG SER LEU GLU ILE PRO ALA ILE VAL GLY THR LYS SEQRES 17 A 572 SER ILE THR GLN GLU VAL LYS GLN GLY ASP MET ILE ILE SEQRES 18 A 572 VAL ASP GLY LEU ASN GLY ASP VAL ILE VAL ASN PRO THR SEQRES 19 A 572 GLU ASP GLU LEU ILE ALA TYR GLN ASP LYS ARG GLU ARG SEQRES 20 A 572 TYR PHE ALA ASP LYS LYS GLU LEU GLN LYS LEU ARG ASP SEQRES 21 A 572 ALA ASP THR VAL THR VAL ASP GLY VAL HIS ALA GLU LEU SEQRES 22 A 572 ALA ALA ASN ILE GLY THR PRO ASN ASP LEU PRO GLY VAL SEQRES 23 A 572 ILE GLU ASN GLY ALA GLN GLY ILE GLY LEU TYR ARG THR SEQRES 24 A 572 GLU PHE LEU TYR MET GLY ARG ASP GLN MET PRO THR GLU SEQRES 25 A 572 GLU GLU GLN PHE GLU ALA TYR LYS GLU VAL LEU GLU ALA SEQRES 26 A 572 MET GLY GLY LYS ARG VAL VAL VAL ARG THR LEU ASP ILE SEQRES 27 A 572 GLY GLY ASP LYS GLU LEU SER TYR LEU ASN LEU PRO GLU SEQRES 28 A 572 GLU MET ASN PRO PHE LEU GLY TYR ARG ALA ILE ARG LEU SEQRES 29 A 572 SER LEU ALA GLN GLN ASP ILE PHE ARG PRO GLN LEU ARG SEQRES 30 A 572 ALA LEU LEU ARG ALA SER VAL TYR GLY LYS LEU ASN ILE SEQRES 31 A 572 MET PHE PRO MET VAL ALA THR ILE ASN GLU PHE ARG GLU SEQRES 32 A 572 ALA LYS ALA ILE LEU LEU GLU GLU LYS GLU ASN LEU LYS SEQRES 33 A 572 ASN GLU GLY HIS ASP ILE SER ASP ASP ILE GLU LEU GLY SEQRES 34 A 572 ILE MET VAL GLU ILE PRO ALA THR ALA ALA LEU ALA ASP SEQRES 35 A 572 VAL PHE ALA LYS GLU VAL ASP PHE PHE SER ILE GLY THR SEQRES 36 A 572 ASN ASP LEU ILE GLN TYR THR LEU ALA ALA ASP ARG MET SEQRES 37 A 572 SER GLU ARG VAL SER TYR LEU TYR GLN PRO TYR ASN PRO SEQRES 38 A 572 SER ILE LEU ARG LEU VAL LYS GLN VAL ILE GLU ALA SER SEQRES 39 A 572 HIS LYS GLU GLY LYS TRP THR GLY MET CYS GLY GLU MET SEQRES 40 A 572 ALA GLY ASP GLU THR ALA ILE PRO LEU LEU LEU GLY LEU SEQRES 41 A 572 GLY LEU ASP GLU PHE SER MET SER ALA THR SER ILE LEU SEQRES 42 A 572 LYS ALA ARG ARG GLN ILE ASN GLY LEU SER LYS ASN GLU SEQRES 43 A 572 MET THR GLU LEU ALA ASN ARG ALA VAL ASP CYS ALA THR SEQRES 44 A 572 GLN GLU GLU VAL ILE GLU LEU VAL ASN ASN TYR VAL LYS HET CA A1572 1 HETNAM CA CALCIUM ION FORMUL 2 CA CA 2+ FORMUL 3 HOH *156(H2 O1) HELIX 1 1 GLU A 41 ASN A 62 1 22 HELIX 2 2 ALA A 72 LEU A 82 1 11 HELIX 3 3 ASP A 84 ASN A 99 1 16 HELIX 4 4 ASN A 101 SER A 119 1 19 HELIX 5 5 ASN A 122 LEU A 144 1 23 HELIX 6 6 THR A 166 ALA A 171 1 6 HELIX 7 7 SER A 190 LEU A 199 1 10 HELIX 8 8 SER A 209 VAL A 214 1 6 HELIX 9 9 THR A 234 LYS A 257 1 24 HELIX 10 10 THR A 279 LEU A 283 5 5 HELIX 11 11 THR A 299 MET A 304 1 6 HELIX 12 12 THR A 311 MET A 326 1 16 HELIX 13 13 ARG A 360 LEU A 366 1 7 HELIX 14 14 GLN A 368 SER A 383 1 16 HELIX 15 15 THR A 397 GLU A 418 1 22 HELIX 16 16 ILE A 434 LEU A 440 1 7 HELIX 17 17 LEU A 440 VAL A 448 1 9 HELIX 18 18 THR A 455 ALA A 464 1 10 HELIX 19 19 SER A 469 TYR A 476 5 8 HELIX 20 20 ASN A 480 GLU A 497 1 18 HELIX 21 21 ALA A 513 LEU A 518 1 6 HELIX 22 22 SER A 528 THR A 530 5 3 HELIX 23 23 SER A 531 ASN A 540 1 10 HELIX 24 24 SER A 543 VAL A 555 1 13 HELIX 25 25 THR A 559 ASN A 569 1 11 SHEET 1 AA 5 LYS A 3 ILE A 5 0 SHEET 2 AA 5 VAL A 229 VAL A 231 -1 O VAL A 229 N ILE A 5 SHEET 3 AA 5 MET A 219 VAL A 222 -1 O ILE A 221 N ILE A 230 SHEET 4 AA 5 ALA A 15 LEU A 21 -1 O ALA A 15 N VAL A 222 SHEET 5 AA 5 VAL A 158 VAL A 161 1 O VAL A 159 N TYR A 20 SHEET 1 AB 2 ALA A 9 SER A 11 0 SHEET 2 AB 2 ALA A 203 ILE A 204 -1 O ALA A 203 N ALA A 10 SHEET 1 AC 2 GLU A 272 ALA A 275 0 SHEET 2 AC 2 GLU A 524 MET A 527 1 O PHE A 525 N ALA A 274 SHEET 1 AD 3 LEU A 296 ARG A 298 0 SHEET 2 AD 3 VAL A 331 ARG A 334 1 O VAL A 332 N TYR A 297 SHEET 3 AD 3 LEU A 388 MET A 391 1 O ASN A 389 N VAL A 333 LINK CA CA A1572 OE1 GLN A 477 1555 1555 2.86 LINK CA CA A1572 OD1 ASN A 399 1555 5555 3.08 CISPEP 1 MET A 153 ILE A 154 0 7.95 CISPEP 2 ASP A 155 GLU A 156 0 -0.82 SITE 1 AC1 3 THR A 397 ASN A 399 GLN A 477 CRYST1 98.340 98.340 105.110 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010169 0.005871 0.000000 0.00000 SCALE2 0.000000 0.011742 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009514 0.00000